Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0202

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0200 and EX28DRAFT_0201 are separated by 212 nucleotidesEX28DRAFT_0201 and EX28DRAFT_0202 overlap by 14 nucleotidesEX28DRAFT_0202 and EX28DRAFT_0203 are separated by 63 nucleotidesEX28DRAFT_0203 and EX28DRAFT_0204 are separated by 92 nucleotides EX28DRAFT_0200: EX28DRAFT_0200 - N-acetylmuramoyl-L-alanine amidase, at 155,793 to 156,668 _0200 EX28DRAFT_0201: EX28DRAFT_0201 - Acetyltransferase (GNAT) family, at 156,881 to 157,306 _0201 EX28DRAFT_0202: EX28DRAFT_0202 - Protein of unknown function (DUF2919), at 157,293 to 157,742 _0202 EX28DRAFT_0203: EX28DRAFT_0203 - Protein of unknown function (DUF1131), at 157,806 to 158,381 _0203 EX28DRAFT_0204: EX28DRAFT_0204 - Dyp-type peroxidase family, at 158,474 to 159,373 _0204 Position (kb) 157 158Strain fitness (log2 ratio) -2 -1 0 1 2 3at 156.319 kb on + strand, within EX28DRAFT_0200at 156.319 kb on + strand, within EX28DRAFT_0200at 156.680 kb on - strandat 156.703 kb on + strandat 156.704 kb on - strandat 156.705 kb on + strandat 156.706 kb on - strandat 156.711 kb on - strandat 156.768 kb on - strandat 156.878 kb on - strandat 156.988 kb on + strand, within EX28DRAFT_0201at 156.988 kb on + strand, within EX28DRAFT_0201at 156.988 kb on + strand, within EX28DRAFT_0201at 156.989 kb on - strand, within EX28DRAFT_0201at 157.088 kb on + strand, within EX28DRAFT_0201at 157.092 kb on - strand, within EX28DRAFT_0201at 157.092 kb on - strand, within EX28DRAFT_0201at 157.232 kb on + strand, within EX28DRAFT_0201at 157.232 kb on + strand, within EX28DRAFT_0201at 157.232 kb on + strand, within EX28DRAFT_0201at 157.233 kb on - strand, within EX28DRAFT_0201at 157.233 kb on - strand, within EX28DRAFT_0201at 157.233 kb on - strand, within EX28DRAFT_0201at 157.233 kb on - strand, within EX28DRAFT_0201at 157.406 kb on - strand, within EX28DRAFT_0202at 157.456 kb on - strand, within EX28DRAFT_0202at 157.787 kb on - strandat 157.878 kb on - strand, within EX28DRAFT_0203at 158.045 kb on + strand, within EX28DRAFT_0203at 158.046 kb on - strand, within EX28DRAFT_0203at 158.046 kb on - strand, within EX28DRAFT_0203at 158.056 kb on - strand, within EX28DRAFT_0203at 158.058 kb on + strand, within EX28DRAFT_0203at 158.165 kb on - strand, within EX28DRAFT_0203at 158.193 kb on + strand, within EX28DRAFT_0203at 158.194 kb on - strand, within EX28DRAFT_0203at 158.194 kb on - strand, within EX28DRAFT_0203at 158.195 kb on + strand, within EX28DRAFT_0203at 158.256 kb on - strand, within EX28DRAFT_0203at 158.283 kb on + strand, within EX28DRAFT_0203at 158.283 kb on + strand, within EX28DRAFT_0203at 158.284 kb on - strand, within EX28DRAFT_0203at 158.342 kb on + strandat 158.343 kb on - strandat 158.379 kb on + strandat 158.379 kb on + strandat 158.419 kb on - strandat 158.420 kb on + strandat 158.423 kb on + strandat 158.458 kb on + strandat 158.459 kb on - strandat 158.543 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
156,319 + EX28DRAFT_0200 0.60 -0.1
156,319 + EX28DRAFT_0200 0.60 -0.1
156,680 - -0.2
156,703 + -0.4
156,704 - +2.3
156,705 + +0.9
156,706 - -0.0
156,711 - -0.2
156,768 - -0.3
156,878 - +0.1
156,988 + EX28DRAFT_0201 0.25 +0.1
156,988 + EX28DRAFT_0201 0.25 +0.6
156,988 + EX28DRAFT_0201 0.25 -0.3
156,989 - EX28DRAFT_0201 0.25 +0.8
157,088 + EX28DRAFT_0201 0.49 +0.5
157,092 - EX28DRAFT_0201 0.50 +0.9
157,092 - EX28DRAFT_0201 0.50 +0.1
157,232 + EX28DRAFT_0201 0.82 -0.4
157,232 + EX28DRAFT_0201 0.82 +0.2
157,232 + EX28DRAFT_0201 0.82 -0.7
157,233 - EX28DRAFT_0201 0.83 -0.1
157,233 - EX28DRAFT_0201 0.83 +0.4
157,233 - EX28DRAFT_0201 0.83 -2.0
157,233 - EX28DRAFT_0201 0.83 -0.3
157,406 - EX28DRAFT_0202 0.25 -1.5
157,456 - EX28DRAFT_0202 0.36 -0.6
157,787 - -0.0
157,878 - EX28DRAFT_0203 0.12 +0.4
158,045 + EX28DRAFT_0203 0.41 +0.3
158,046 - EX28DRAFT_0203 0.42 +0.3
158,046 - EX28DRAFT_0203 0.42 -0.0
158,056 - EX28DRAFT_0203 0.43 +1.3
158,058 + EX28DRAFT_0203 0.44 +0.6
158,165 - EX28DRAFT_0203 0.62 +1.0
158,193 + EX28DRAFT_0203 0.67 +0.7
158,194 - EX28DRAFT_0203 0.67 -0.6
158,194 - EX28DRAFT_0203 0.67 +1.6
158,195 + EX28DRAFT_0203 0.68 -0.0
158,256 - EX28DRAFT_0203 0.78 -0.5
158,283 + EX28DRAFT_0203 0.83 +0.1
158,283 + EX28DRAFT_0203 0.83 -0.0
158,284 - EX28DRAFT_0203 0.83 -0.3
158,342 + +2.9
158,343 - -0.3
158,379 + -0.2
158,379 + +0.0
158,419 - -0.0
158,420 + +0.8
158,423 + -0.2
158,458 + +0.3
158,459 - -1.0
158,543 - +0.1

Or see this region's nucleotide sequence