Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0063

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0062 and EX28DRAFT_0063 are separated by 110 nucleotidesEX28DRAFT_0063 and EX28DRAFT_0064 are separated by 35 nucleotidesEX28DRAFT_0064 and EX28DRAFT_0065 are separated by 69 nucleotides EX28DRAFT_0062: EX28DRAFT_0062 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 2,182 to 3,537 _0062 EX28DRAFT_0063: EX28DRAFT_0063 - Acyl-CoA synthetase (NDP forming), at 3,648 to 6,311 _0063 EX28DRAFT_0064: EX28DRAFT_0064 - Uncharacterized conserved protein, at 6,347 to 7,045 _0064 EX28DRAFT_0065: EX28DRAFT_0065 - thioredoxin, at 7,115 to 7,534 _0065 Position (kb) 3 4 5 6 7Strain fitness (log2 ratio) -2 -1 0 1at 3.578 kb on - strandat 3.644 kb on + strandat 3.649 kb on + strandat 3.696 kb on - strandat 3.765 kb on - strandat 3.770 kb on + strandat 3.771 kb on - strandat 3.771 kb on - strandat 3.771 kb on - strandat 3.774 kb on - strandat 3.810 kb on - strandat 3.811 kb on + strandat 3.812 kb on - strandat 4.058 kb on - strand, within EX28DRAFT_0063at 4.691 kb on - strand, within EX28DRAFT_0063at 4.691 kb on - strand, within EX28DRAFT_0063at 4.692 kb on + strand, within EX28DRAFT_0063at 4.692 kb on + strand, within EX28DRAFT_0063at 4.692 kb on + strand, within EX28DRAFT_0063at 4.698 kb on - strand, within EX28DRAFT_0063at 4.698 kb on - strand, within EX28DRAFT_0063at 4.718 kb on + strand, within EX28DRAFT_0063at 4.778 kb on + strand, within EX28DRAFT_0063at 4.779 kb on - strand, within EX28DRAFT_0063at 4.997 kb on + strand, within EX28DRAFT_0063at 5.003 kb on + strand, within EX28DRAFT_0063at 5.003 kb on + strand, within EX28DRAFT_0063at 5.003 kb on + strand, within EX28DRAFT_0063at 5.003 kb on + strand, within EX28DRAFT_0063at 5.003 kb on + strand, within EX28DRAFT_0063at 5.004 kb on - strand, within EX28DRAFT_0063at 5.119 kb on + strand, within EX28DRAFT_0063at 5.119 kb on + strand, within EX28DRAFT_0063at 5.119 kb on + strand, within EX28DRAFT_0063at 5.120 kb on - strand, within EX28DRAFT_0063at 5.120 kb on - strand, within EX28DRAFT_0063at 5.120 kb on - strand, within EX28DRAFT_0063at 5.260 kb on + strand, within EX28DRAFT_0063at 5.261 kb on - strand, within EX28DRAFT_0063at 5.693 kb on - strand, within EX28DRAFT_0063at 6.017 kb on + strand, within EX28DRAFT_0063at 6.018 kb on - strand, within EX28DRAFT_0063at 6.018 kb on - strand, within EX28DRAFT_0063at 6.018 kb on - strand, within EX28DRAFT_0063at 6.069 kb on - strandat 6.083 kb on + strandat 6.158 kb on + strandat 6.159 kb on - strandat 6.160 kb on + strandat 6.160 kb on + strandat 6.160 kb on + strandat 6.161 kb on - strandat 6.191 kb on + strandat 6.349 kb on - strandat 6.386 kb on - strandat 6.409 kb on - strandat 6.706 kb on - strand, within EX28DRAFT_0064at 6.706 kb on - strand, within EX28DRAFT_0064at 6.727 kb on + strand, within EX28DRAFT_0064at 6.728 kb on - strand, within EX28DRAFT_0064at 6.965 kb on - strand, within EX28DRAFT_0064

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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3,578 - +1.0
3,644 + -0.1
3,649 + +0.3
3,696 - -0.0
3,765 - -0.3
3,770 + +0.3
3,771 - +0.2
3,771 - +0.2
3,771 - -0.1
3,774 - +0.5
3,810 - +0.4
3,811 + -0.1
3,812 - -0.2
4,058 - EX28DRAFT_0063 0.15 -0.6
4,691 - EX28DRAFT_0063 0.39 -0.1
4,691 - EX28DRAFT_0063 0.39 +0.2
4,692 + EX28DRAFT_0063 0.39 -0.3
4,692 + EX28DRAFT_0063 0.39 -0.0
4,692 + EX28DRAFT_0063 0.39 -0.2
4,698 - EX28DRAFT_0063 0.39 +1.1
4,698 - EX28DRAFT_0063 0.39 +0.2
4,718 + EX28DRAFT_0063 0.40 -1.3
4,778 + EX28DRAFT_0063 0.42 -0.6
4,779 - EX28DRAFT_0063 0.42 -0.0
4,997 + EX28DRAFT_0063 0.51 -0.5
5,003 + EX28DRAFT_0063 0.51 -0.6
5,003 + EX28DRAFT_0063 0.51 +0.0
5,003 + EX28DRAFT_0063 0.51 +0.2
5,003 + EX28DRAFT_0063 0.51 +0.2
5,003 + EX28DRAFT_0063 0.51 +0.3
5,004 - EX28DRAFT_0063 0.51 -0.2
5,119 + EX28DRAFT_0063 0.55 -0.3
5,119 + EX28DRAFT_0063 0.55 +0.2
5,119 + EX28DRAFT_0063 0.55 +0.8
5,120 - EX28DRAFT_0063 0.55 -2.7
5,120 - EX28DRAFT_0063 0.55 +0.5
5,120 - EX28DRAFT_0063 0.55 +0.5
5,260 + EX28DRAFT_0063 0.61 -0.0
5,261 - EX28DRAFT_0063 0.61 +0.4
5,693 - EX28DRAFT_0063 0.77 -0.2
6,017 + EX28DRAFT_0063 0.89 -0.2
6,018 - EX28DRAFT_0063 0.89 +0.2
6,018 - EX28DRAFT_0063 0.89 -0.1
6,018 - EX28DRAFT_0063 0.89 +0.3
6,069 - -0.5
6,083 + +0.3
6,158 + -0.0
6,159 - -1.0
6,160 + +0.9
6,160 + +0.4
6,160 + -1.3
6,161 - -1.3
6,191 + -1.3
6,349 - +0.1
6,386 - +0.1
6,409 - -0.1
6,706 - EX28DRAFT_0064 0.51 +0.7
6,706 - EX28DRAFT_0064 0.51 -0.4
6,727 + EX28DRAFT_0064 0.54 +0.4
6,728 - EX28DRAFT_0064 0.55 +0.1
6,965 - EX28DRAFT_0064 0.88 +1.2

Or see this region's nucleotide sequence