Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21660

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21655 and CA264_21660 are separated by 11 nucleotidesCA264_21660 and CA264_21665 are separated by 102 nucleotides CA264_21655: CA264_21655 - MBL fold hydrolase, at 199,832 to 201,199 _21655 CA264_21660: CA264_21660 - ATPase, at 201,211 to 202,068 _21660 CA264_21665: CA264_21665 - 2-hydroxyacid dehydrogenase, at 202,171 to 203,169 _21665 Position (kb) 201 202 203Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 200.236 kb on + strand, within CA264_21655at 200.239 kb on + strand, within CA264_21655at 200.261 kb on + strand, within CA264_21655at 200.262 kb on - strand, within CA264_21655at 200.281 kb on + strand, within CA264_21655at 200.346 kb on - strand, within CA264_21655at 200.347 kb on + strand, within CA264_21655at 200.352 kb on - strand, within CA264_21655at 200.390 kb on + strand, within CA264_21655at 200.537 kb on + strand, within CA264_21655at 200.538 kb on - strand, within CA264_21655at 200.549 kb on + strand, within CA264_21655at 200.562 kb on + strand, within CA264_21655at 200.562 kb on + strand, within CA264_21655at 200.563 kb on - strand, within CA264_21655at 200.574 kb on - strand, within CA264_21655at 200.576 kb on - strand, within CA264_21655at 200.614 kb on - strand, within CA264_21655at 200.614 kb on - strand, within CA264_21655at 200.673 kb on - strand, within CA264_21655at 200.704 kb on + strand, within CA264_21655at 200.704 kb on + strand, within CA264_21655at 200.715 kb on + strand, within CA264_21655at 200.782 kb on - strand, within CA264_21655at 200.798 kb on + strand, within CA264_21655at 200.834 kb on - strand, within CA264_21655at 200.855 kb on - strand, within CA264_21655at 200.906 kb on + strand, within CA264_21655at 200.962 kb on + strand, within CA264_21655at 200.962 kb on + strand, within CA264_21655at 200.963 kb on - strand, within CA264_21655at 200.967 kb on - strand, within CA264_21655at 201.080 kb on + strandat 201.133 kb on + strandat 201.179 kb on + strandat 201.179 kb on + strandat 201.185 kb on + strandat 201.186 kb on - strandat 201.200 kb on - strandat 201.213 kb on - strandat 201.237 kb on + strandat 201.241 kb on + strandat 201.241 kb on + strandat 201.242 kb on - strandat 201.242 kb on - strandat 201.322 kb on + strand, within CA264_21660at 201.322 kb on + strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.337 kb on + strand, within CA264_21660at 201.378 kb on + strand, within CA264_21660at 201.406 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.434 kb on - strand, within CA264_21660at 201.453 kb on - strand, within CA264_21660at 201.472 kb on + strand, within CA264_21660at 201.486 kb on + strand, within CA264_21660at 201.487 kb on - strand, within CA264_21660at 201.487 kb on - strand, within CA264_21660at 201.565 kb on + strand, within CA264_21660at 201.571 kb on + strand, within CA264_21660at 201.572 kb on - strand, within CA264_21660at 201.611 kb on + strand, within CA264_21660at 201.612 kb on - strand, within CA264_21660at 201.667 kb on + strand, within CA264_21660at 201.672 kb on + strand, within CA264_21660at 201.768 kb on - strand, within CA264_21660at 201.817 kb on + strand, within CA264_21660at 201.839 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.913 kb on - strand, within CA264_21660at 202.048 kb on + strandat 202.049 kb on - strandat 202.049 kb on - strandat 202.049 kb on - strandat 202.050 kb on + strandat 202.052 kb on + strandat 202.052 kb on + strandat 202.056 kb on + strandat 202.057 kb on - strandat 202.085 kb on + strandat 202.145 kb on + strandat 202.146 kb on - strandat 202.167 kb on - strandat 202.172 kb on + strandat 202.173 kb on - strandat 202.232 kb on + strandat 202.232 kb on + strandat 202.293 kb on + strand, within CA264_21665at 202.293 kb on + strand, within CA264_21665at 202.296 kb on + strand, within CA264_21665at 202.296 kb on + strand, within CA264_21665at 202.297 kb on - strand, within CA264_21665at 202.330 kb on + strand, within CA264_21665at 202.331 kb on - strand, within CA264_21665at 202.331 kb on - strand, within CA264_21665at 202.391 kb on + strand, within CA264_21665at 202.399 kb on + strand, within CA264_21665at 202.406 kb on - strand, within CA264_21665at 202.608 kb on - strand, within CA264_21665at 202.637 kb on + strand, within CA264_21665at 202.699 kb on + strand, within CA264_21665at 202.700 kb on - strand, within CA264_21665at 202.704 kb on + strand, within CA264_21665at 202.704 kb on + strand, within CA264_21665at 202.709 kb on - strand, within CA264_21665at 202.717 kb on + strand, within CA264_21665at 202.727 kb on - strand, within CA264_21665at 202.749 kb on + strand, within CA264_21665at 202.771 kb on + strand, within CA264_21665at 202.771 kb on + strand, within CA264_21665at 202.782 kb on + strand, within CA264_21665at 202.800 kb on + strand, within CA264_21665at 202.800 kb on + strand, within CA264_21665at 202.858 kb on + strand, within CA264_21665at 202.866 kb on - strand, within CA264_21665at 202.874 kb on + strand, within CA264_21665at 202.874 kb on + strand, within CA264_21665at 202.875 kb on - strand, within CA264_21665at 203.025 kb on + strand, within CA264_21665at 203.025 kb on + strand, within CA264_21665at 203.026 kb on - strand, within CA264_21665at 203.026 kb on - strand, within CA264_21665

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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200,236 + CA264_21655 0.30 -0.3
200,239 + CA264_21655 0.30 -0.1
200,261 + CA264_21655 0.31 -0.0
200,262 - CA264_21655 0.31 +1.2
200,281 + CA264_21655 0.33 +0.2
200,346 - CA264_21655 0.38 +0.0
200,347 + CA264_21655 0.38 +0.4
200,352 - CA264_21655 0.38 +0.1
200,390 + CA264_21655 0.41 +0.4
200,537 + CA264_21655 0.52 +1.2
200,538 - CA264_21655 0.52 -0.6
200,549 + CA264_21655 0.52 -0.3
200,562 + CA264_21655 0.53 +0.4
200,562 + CA264_21655 0.53 +0.5
200,563 - CA264_21655 0.53 -1.1
200,574 - CA264_21655 0.54 -1.9
200,576 - CA264_21655 0.54 -1.6
200,614 - CA264_21655 0.57 +0.5
200,614 - CA264_21655 0.57 -0.9
200,673 - CA264_21655 0.61 -1.2
200,704 + CA264_21655 0.64 -0.1
200,704 + CA264_21655 0.64 +1.6
200,715 + CA264_21655 0.65 -0.4
200,782 - CA264_21655 0.69 -1.8
200,798 + CA264_21655 0.71 +1.5
200,834 - CA264_21655 0.73 -0.3
200,855 - CA264_21655 0.75 -1.3
200,906 + CA264_21655 0.79 -0.1
200,962 + CA264_21655 0.83 -0.0
200,962 + CA264_21655 0.83 +0.4
200,963 - CA264_21655 0.83 -1.4
200,967 - CA264_21655 0.83 +0.0
201,080 + -0.2
201,133 + +0.6
201,179 + -0.7
201,179 + +0.6
201,185 + +0.1
201,186 - -1.0
201,200 - -2.3
201,213 - -0.8
201,237 + +0.8
201,241 + -0.5
201,241 + +1.3
201,242 - +0.0
201,242 - -1.8
201,322 + CA264_21660 0.13 +0.6
201,322 + CA264_21660 0.13 +0.8
201,323 - CA264_21660 0.13 -1.6
201,323 - CA264_21660 0.13 -0.3
201,323 - CA264_21660 0.13 -1.0
201,337 + CA264_21660 0.15 -0.3
201,378 + CA264_21660 0.19 -0.2
201,406 + CA264_21660 0.23 +0.5
201,433 + CA264_21660 0.26 -0.9
201,433 + CA264_21660 0.26 +1.1
201,433 + CA264_21660 0.26 +1.2
201,434 - CA264_21660 0.26 -0.2
201,453 - CA264_21660 0.28 -2.2
201,472 + CA264_21660 0.30 +0.2
201,486 + CA264_21660 0.32 +0.3
201,487 - CA264_21660 0.32 +0.2
201,487 - CA264_21660 0.32 -1.1
201,565 + CA264_21660 0.41 +0.7
201,571 + CA264_21660 0.42 +1.5
201,572 - CA264_21660 0.42 -0.9
201,611 + CA264_21660 0.47 +0.4
201,612 - CA264_21660 0.47 +0.1
201,667 + CA264_21660 0.53 +1.7
201,672 + CA264_21660 0.54 +1.2
201,768 - CA264_21660 0.65 -1.3
201,817 + CA264_21660 0.71 +2.5
201,839 - CA264_21660 0.73 -1.8
201,900 - CA264_21660 0.80 -1.8
201,900 - CA264_21660 0.80 +1.6
201,900 - CA264_21660 0.80 -0.2
201,913 - CA264_21660 0.82 -1.2
202,048 + +0.9
202,049 - -1.7
202,049 - -1.0
202,049 - -0.9
202,050 + -0.7
202,052 + -0.2
202,052 + -1.3
202,056 + -0.0
202,057 - -1.9
202,085 + -0.2
202,145 + -1.8
202,146 - -1.5
202,167 - -0.3
202,172 + +0.7
202,173 - -0.8
202,232 + +0.2
202,232 + -2.0
202,293 + CA264_21665 0.12 +1.0
202,293 + CA264_21665 0.12 -1.8
202,296 + CA264_21665 0.13 +0.5
202,296 + CA264_21665 0.13 -0.6
202,297 - CA264_21665 0.13 -1.6
202,330 + CA264_21665 0.16 -0.2
202,331 - CA264_21665 0.16 -0.9
202,331 - CA264_21665 0.16 -1.3
202,391 + CA264_21665 0.22 +1.5
202,399 + CA264_21665 0.23 -0.9
202,406 - CA264_21665 0.24 -1.2
202,608 - CA264_21665 0.44 -0.2
202,637 + CA264_21665 0.47 +0.2
202,699 + CA264_21665 0.53 +0.0
202,700 - CA264_21665 0.53 -1.1
202,704 + CA264_21665 0.53 +0.6
202,704 + CA264_21665 0.53 +1.6
202,709 - CA264_21665 0.54 -0.6
202,717 + CA264_21665 0.55 +0.1
202,727 - CA264_21665 0.56 -0.6
202,749 + CA264_21665 0.58 -0.4
202,771 + CA264_21665 0.60 -0.2
202,771 + CA264_21665 0.60 -0.1
202,782 + CA264_21665 0.61 +0.5
202,800 + CA264_21665 0.63 +0.4
202,800 + CA264_21665 0.63 -0.7
202,858 + CA264_21665 0.69 +0.0
202,866 - CA264_21665 0.70 -1.1
202,874 + CA264_21665 0.70 +0.4
202,874 + CA264_21665 0.70 +0.3
202,875 - CA264_21665 0.70 -1.9
203,025 + CA264_21665 0.85 +0.1
203,025 + CA264_21665 0.85 -1.2
203,026 - CA264_21665 0.86 -3.0
203,026 - CA264_21665 0.86 -2.2

Or see this region's nucleotide sequence