Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21135

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21125 and CA264_21130 are separated by 410 nucleotidesCA264_21130 and CA264_21135 are separated by 50 nucleotidesCA264_21135 and CA264_21140 are separated by 62 nucleotides CA264_21125: CA264_21125 - hypothetical protein, at 91,290 to 91,496 _21125 CA264_21130: CA264_21130 - hypothetical protein, at 91,907 to 92,332 _21130 CA264_21135: CA264_21135 - cation transporter, at 92,383 to 93,279 _21135 CA264_21140: CA264_21140 - 6-phosphogluconate dehydrogenase (decarboxylating), at 93,342 to 94,323 _21140 Position (kb) 92 93 94Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 91.436 kb on + strand, within CA264_21125at 91.446 kb on - strand, within CA264_21125at 91.457 kb on + strand, within CA264_21125at 91.459 kb on + strand, within CA264_21125at 91.460 kb on - strand, within CA264_21125at 91.460 kb on - strand, within CA264_21125at 91.522 kb on + strandat 91.525 kb on + strandat 91.525 kb on + strandat 91.558 kb on - strandat 91.558 kb on - strandat 91.591 kb on - strandat 91.592 kb on + strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.596 kb on + strandat 91.597 kb on - strandat 91.597 kb on - strandat 91.597 kb on - strandat 91.598 kb on + strandat 91.605 kb on + strandat 91.605 kb on + strandat 91.605 kb on + strandat 91.606 kb on - strandat 91.606 kb on - strandat 91.627 kb on + strandat 91.627 kb on + strandat 91.634 kb on - strandat 91.652 kb on - strandat 91.652 kb on - strandat 91.652 kb on - strandat 91.670 kb on - strandat 91.730 kb on + strandat 91.730 kb on + strandat 91.732 kb on + strandat 91.733 kb on - strandat 91.762 kb on + strandat 91.763 kb on - strandat 91.790 kb on + strandat 91.838 kb on - strandat 91.866 kb on - strandat 91.956 kb on + strand, within CA264_21130at 91.956 kb on + strand, within CA264_21130at 91.956 kb on + strand, within CA264_21130at 91.957 kb on - strand, within CA264_21130at 92.071 kb on + strand, within CA264_21130at 92.185 kb on + strand, within CA264_21130at 92.185 kb on + strand, within CA264_21130at 92.185 kb on + strand, within CA264_21130at 92.187 kb on + strand, within CA264_21130at 92.188 kb on - strand, within CA264_21130at 92.188 kb on - strand, within CA264_21130at 92.188 kb on - strand, within CA264_21130at 92.249 kb on + strand, within CA264_21130at 92.251 kb on + strand, within CA264_21130at 92.258 kb on + strand, within CA264_21130at 92.259 kb on - strand, within CA264_21130at 92.259 kb on - strand, within CA264_21130at 92.259 kb on - strand, within CA264_21130at 92.287 kb on + strand, within CA264_21130at 92.287 kb on + strand, within CA264_21130at 92.291 kb on + strandat 92.291 kb on + strandat 92.292 kb on - strandat 92.292 kb on - strandat 92.292 kb on - strandat 92.292 kb on - strandat 92.293 kb on + strandat 92.327 kb on + strandat 92.328 kb on - strandat 92.328 kb on - strandat 92.328 kb on - strandat 92.332 kb on + strandat 92.350 kb on + strandat 92.351 kb on - strandat 92.351 kb on - strandat 92.358 kb on + strandat 92.359 kb on - strandat 92.364 kb on + strandat 92.402 kb on + strandat 92.403 kb on - strandat 92.461 kb on + strandat 92.461 kb on + strandat 92.462 kb on - strandat 92.463 kb on + strandat 92.500 kb on - strand, within CA264_21135at 92.543 kb on + strand, within CA264_21135at 92.670 kb on + strand, within CA264_21135at 92.698 kb on + strand, within CA264_21135at 92.740 kb on - strand, within CA264_21135at 92.740 kb on - strand, within CA264_21135at 92.740 kb on - strand, within CA264_21135at 92.788 kb on + strand, within CA264_21135at 92.788 kb on + strand, within CA264_21135at 92.788 kb on + strand, within CA264_21135at 92.788 kb on + strand, within CA264_21135at 92.788 kb on + strand, within CA264_21135at 92.788 kb on + strandat 92.789 kb on - strand, within CA264_21135at 92.789 kb on - strand, within CA264_21135at 92.789 kb on - strand, within CA264_21135at 92.789 kb on - strand, within CA264_21135at 92.789 kb on - strand, within CA264_21135at 92.836 kb on + strand, within CA264_21135at 92.836 kb on + strand, within CA264_21135at 92.877 kb on + strand, within CA264_21135at 92.881 kb on - strand, within CA264_21135at 92.914 kb on + strand, within CA264_21135at 92.915 kb on - strand, within CA264_21135at 92.917 kb on + strand, within CA264_21135at 92.944 kb on - strand, within CA264_21135at 92.944 kb on - strand, within CA264_21135at 92.946 kb on - strand, within CA264_21135at 93.168 kb on + strand, within CA264_21135at 93.168 kb on + strand, within CA264_21135at 93.188 kb on + strand, within CA264_21135at 93.278 kb on - strandat 93.280 kb on + strandat 93.281 kb on - strandat 93.283 kb on - strandat 93.327 kb on - strandat 93.340 kb on - strandat 93.368 kb on + strandat 93.370 kb on + strandat 93.424 kb on - strandat 93.431 kb on - strandat 93.546 kb on + strand, within CA264_21140at 93.546 kb on + strand, within CA264_21140at 93.547 kb on - strand, within CA264_21140at 93.547 kb on - strand, within CA264_21140at 93.640 kb on - strand, within CA264_21140at 93.640 kb on - strand, within CA264_21140at 93.697 kb on + strand, within CA264_21140at 93.698 kb on - strand, within CA264_21140at 93.775 kb on + strand, within CA264_21140at 93.965 kb on + strand, within CA264_21140at 93.965 kb on + strand, within CA264_21140at 93.965 kb on + strand, within CA264_21140at 94.028 kb on - strand, within CA264_21140at 94.064 kb on - strand, within CA264_21140at 94.184 kb on + strand, within CA264_21140at 94.249 kb on + strandat 94.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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91,436 + CA264_21125 0.71 -0.3
91,446 - CA264_21125 0.75 -0.3
91,457 + CA264_21125 0.81 +0.7
91,459 + CA264_21125 0.82 +1.3
91,460 - CA264_21125 0.82 +0.5
91,460 - CA264_21125 0.82 -2.2
91,522 + +0.3
91,525 + +0.1
91,525 + +0.4
91,558 - +0.4
91,558 - +1.7
91,591 - +0.1
91,592 + -0.7
91,593 - +0.4
91,593 - -0.2
91,593 - -0.5
91,593 - +0.0
91,593 - +0.2
91,593 - +0.6
91,593 - -0.4
91,593 - +2.8
91,593 - -1.6
91,596 + +0.6
91,597 - +1.8
91,597 - +1.8
91,597 - +1.4
91,598 + -0.7
91,605 + +1.4
91,605 + +0.5
91,605 + +0.3
91,606 - +0.6
91,606 - +1.0
91,627 + -1.3
91,627 + -0.3
91,634 - +1.1
91,652 - +0.5
91,652 - +1.2
91,652 - +0.2
91,670 - -0.3
91,730 + -0.4
91,730 + -0.2
91,732 + +0.7
91,733 - -0.2
91,762 + +2.0
91,763 - +0.7
91,790 + +1.6
91,838 - +1.1
91,866 - +1.1
91,956 + CA264_21130 0.12 +0.8
91,956 + CA264_21130 0.12 +0.1
91,956 + CA264_21130 0.12 +0.5
91,957 - CA264_21130 0.12 +1.6
92,071 + CA264_21130 0.38 -1.3
92,185 + CA264_21130 0.65 -0.6
92,185 + CA264_21130 0.65 -1.7
92,185 + CA264_21130 0.65 -1.1
92,187 + CA264_21130 0.66 +0.0
92,188 - CA264_21130 0.66 +0.3
92,188 - CA264_21130 0.66 +0.5
92,188 - CA264_21130 0.66 -0.6
92,249 + CA264_21130 0.80 +0.2
92,251 + CA264_21130 0.81 -0.6
92,258 + CA264_21130 0.82 -1.8
92,259 - CA264_21130 0.83 +0.2
92,259 - CA264_21130 0.83 -0.1
92,259 - CA264_21130 0.83 +0.8
92,287 + CA264_21130 0.89 +0.2
92,287 + CA264_21130 0.89 -1.9
92,291 + +0.5
92,291 + -1.7
92,292 - -0.9
92,292 - +0.8
92,292 - +0.4
92,292 - +0.2
92,293 + -0.6
92,327 + -0.3
92,328 - +0.4
92,328 - +0.3
92,328 - -1.5
92,332 + -1.1
92,350 + +0.2
92,351 - +1.4
92,351 - -0.5
92,358 + -0.6
92,359 - +0.6
92,364 + -1.2
92,402 + -1.0
92,403 - +1.4
92,461 + -1.2
92,461 + -1.9
92,462 - -0.9
92,463 + -1.7
92,500 - CA264_21135 0.13 -0.3
92,543 + CA264_21135 0.18 -0.3
92,670 + CA264_21135 0.32 -1.8
92,698 + CA264_21135 0.35 +0.0
92,740 - CA264_21135 0.40 -0.0
92,740 - CA264_21135 0.40 -1.4
92,740 - CA264_21135 0.40 -1.3
92,788 + CA264_21135 0.45 -0.9
92,788 + CA264_21135 0.45 +0.4
92,788 + CA264_21135 0.45 +0.2
92,788 + CA264_21135 0.45 +0.8
92,788 + CA264_21135 0.45 +1.0
92,788 + +1.2
92,789 - CA264_21135 0.45 +0.3
92,789 - CA264_21135 0.45 -2.1
92,789 - CA264_21135 0.45 +0.4
92,789 - CA264_21135 0.45 -1.8
92,789 - CA264_21135 0.45 +0.8
92,836 + CA264_21135 0.51 -2.8
92,836 + CA264_21135 0.51 -0.6
92,877 + CA264_21135 0.55 -2.5
92,881 - CA264_21135 0.56 +1.2
92,914 + CA264_21135 0.59 -2.1
92,915 - CA264_21135 0.59 +0.7
92,917 + CA264_21135 0.60 -2.7
92,944 - CA264_21135 0.63 +0.2
92,944 - CA264_21135 0.63 -0.1
92,946 - CA264_21135 0.63 -0.5
93,168 + CA264_21135 0.88 -1.5
93,168 + CA264_21135 0.88 +0.3
93,188 + CA264_21135 0.90 -0.5
93,278 - -1.0
93,280 + +0.4
93,281 - +0.6
93,283 - -0.2
93,327 - -0.5
93,340 - +1.3
93,368 + -0.7
93,370 + -2.4
93,424 - +0.5
93,431 - +0.3
93,546 + CA264_21140 0.21 -0.6
93,546 + CA264_21140 0.21 +0.5
93,547 - CA264_21140 0.21 +1.4
93,547 - CA264_21140 0.21 +0.9
93,640 - CA264_21140 0.30 +0.0
93,640 - CA264_21140 0.30 +0.6
93,697 + CA264_21140 0.36 -1.4
93,698 - CA264_21140 0.36 +1.5
93,775 + CA264_21140 0.44 -1.3
93,965 + CA264_21140 0.63 -0.9
93,965 + CA264_21140 0.63 +1.0
93,965 + CA264_21140 0.63 +0.2
94,028 - CA264_21140 0.70 +0.1
94,064 - CA264_21140 0.74 -1.0
94,184 + CA264_21140 0.86 -1.2
94,249 + -1.5
94,250 - +0.9

Or see this region's nucleotide sequence