Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21110

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_21105 and CA264_21110 are separated by 324 nucleotidesCA264_21110 and CA264_21115 are separated by 586 nucleotides CA264_21105: CA264_21105 - alpha-ribazole phosphatase, at 85,816 to 86,655 _21105 CA264_21110: CA264_21110 - hypothetical protein, at 86,980 to 87,858 _21110 CA264_21115: CA264_21115 - dihydrolipoyl dehydrogenase, at 88,445 to 89,839 _21115 Position (kb) 86 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 85.990 kb on - strand, within CA264_21105at 86.098 kb on - strand, within CA264_21105at 86.161 kb on - strand, within CA264_21105at 86.247 kb on + strand, within CA264_21105at 86.250 kb on + strand, within CA264_21105at 86.251 kb on - strand, within CA264_21105at 86.314 kb on + strand, within CA264_21105at 86.315 kb on - strand, within CA264_21105at 86.315 kb on - strand, within CA264_21105at 86.317 kb on + strand, within CA264_21105at 86.318 kb on - strand, within CA264_21105at 86.328 kb on + strand, within CA264_21105at 86.328 kb on + strand, within CA264_21105at 86.328 kb on + strand, within CA264_21105at 86.329 kb on - strand, within CA264_21105at 86.333 kb on + strand, within CA264_21105at 86.361 kb on + strand, within CA264_21105at 86.362 kb on - strand, within CA264_21105at 86.416 kb on + strand, within CA264_21105at 86.510 kb on + strand, within CA264_21105at 86.510 kb on + strand, within CA264_21105at 86.510 kb on + strand, within CA264_21105at 86.510 kb on + strand, within CA264_21105at 86.511 kb on - strand, within CA264_21105at 86.511 kb on - strand, within CA264_21105at 86.511 kb on - strand, within CA264_21105at 86.511 kb on - strand, within CA264_21105at 86.511 kb on - strand, within CA264_21105at 86.511 kb on - strand, within CA264_21105at 86.511 kb on - strand, within CA264_21105at 86.511 kb on - strand, within CA264_21105at 86.511 kb on - strand, within CA264_21105at 86.536 kb on - strand, within CA264_21105at 86.537 kb on + strand, within CA264_21105at 86.541 kb on + strand, within CA264_21105at 86.542 kb on - strand, within CA264_21105at 86.594 kb on - strandat 86.599 kb on + strandat 86.617 kb on + strandat 86.618 kb on - strandat 86.618 kb on - strandat 86.618 kb on - strandat 86.623 kb on + strandat 86.684 kb on - strandat 86.734 kb on - strandat 86.742 kb on - strandat 86.742 kb on - strandat 86.742 kb on - strandat 86.774 kb on + strandat 86.774 kb on + strandat 86.775 kb on - strandat 86.775 kb on - strandat 86.802 kb on + strandat 86.820 kb on + strandat 86.829 kb on - strandat 86.843 kb on + strandat 86.865 kb on + strandat 86.865 kb on + strandat 86.892 kb on + strandat 86.897 kb on + strandat 86.901 kb on + strandat 86.941 kb on + strandat 86.944 kb on + strandat 86.955 kb on - strandat 86.955 kb on - strandat 86.957 kb on - strandat 86.957 kb on - strandat 86.962 kb on - strandat 86.963 kb on + strandat 86.963 kb on + strandat 86.977 kb on - strandat 86.977 kb on - strandat 86.977 kb on - strandat 86.982 kb on - strandat 87.046 kb on + strandat 87.047 kb on - strandat 87.047 kb on - strandat 87.047 kb on - strandat 87.051 kb on - strandat 87.069 kb on + strand, within CA264_21110at 87.087 kb on - strand, within CA264_21110at 87.230 kb on + strand, within CA264_21110at 87.306 kb on - strand, within CA264_21110at 87.306 kb on - strand, within CA264_21110at 87.318 kb on + strand, within CA264_21110at 87.323 kb on + strand, within CA264_21110at 87.323 kb on + strand, within CA264_21110at 87.420 kb on - strand, within CA264_21110at 87.513 kb on + strand, within CA264_21110at 87.517 kb on + strand, within CA264_21110at 87.537 kb on + strand, within CA264_21110at 87.537 kb on + strand, within CA264_21110at 87.537 kb on + strand, within CA264_21110at 87.611 kb on + strand, within CA264_21110at 87.623 kb on - strand, within CA264_21110at 87.626 kb on + strand, within CA264_21110at 87.627 kb on - strand, within CA264_21110at 87.665 kb on + strand, within CA264_21110at 87.680 kb on - strand, within CA264_21110at 87.680 kb on - strand, within CA264_21110at 87.680 kb on - strand, within CA264_21110at 87.692 kb on - strand, within CA264_21110at 87.715 kb on + strand, within CA264_21110at 87.740 kb on - strand, within CA264_21110at 87.796 kb on - strandat 87.846 kb on - strandat 87.859 kb on - strandat 87.869 kb on - strandat 87.883 kb on + strandat 87.934 kb on - strandat 87.945 kb on + strandat 87.946 kb on - strandat 87.946 kb on - strandat 87.947 kb on + strandat 87.947 kb on + strandat 87.947 kb on + strandat 87.948 kb on - strandat 87.991 kb on + strandat 88.040 kb on + strandat 88.044 kb on + strandat 88.045 kb on - strandat 88.045 kb on - strandat 88.159 kb on + strandat 88.166 kb on - strandat 88.179 kb on - strandat 88.184 kb on - strandat 88.197 kb on + strandat 88.231 kb on + strandat 88.232 kb on - strandat 88.259 kb on - strandat 88.259 kb on - strandat 88.262 kb on + strandat 88.289 kb on - strandat 88.291 kb on + strandat 88.297 kb on + strandat 88.301 kb on + strandat 88.301 kb on + strandat 88.302 kb on - strandat 88.395 kb on + strandat 88.396 kb on - strandat 88.451 kb on + strandat 88.458 kb on + strandat 88.458 kb on + strandat 88.458 kb on + strandat 88.458 kb on + strandat 88.459 kb on - strandat 88.459 kb on - strandat 88.459 kb on - strandat 88.459 kb on - strandat 88.515 kb on + strandat 88.516 kb on - strandat 88.582 kb on + strandat 88.583 kb on - strandat 88.583 kb on - strandat 88.583 kb on - strandat 88.584 kb on + strandat 88.622 kb on + strand, within CA264_21115at 88.666 kb on + strand, within CA264_21115at 88.703 kb on - strand, within CA264_21115at 88.728 kb on + strand, within CA264_21115at 88.728 kb on + strand, within CA264_21115at 88.729 kb on - strand, within CA264_21115at 88.729 kb on - strand, within CA264_21115at 88.742 kb on + strand, within CA264_21115at 88.794 kb on + strand, within CA264_21115at 88.794 kb on + strand, within CA264_21115at 88.816 kb on - strand, within CA264_21115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
remove
85,990 - CA264_21105 0.21 +0.7
86,098 - CA264_21105 0.34 +0.1
86,161 - CA264_21105 0.41 +1.8
86,247 + CA264_21105 0.51 +1.1
86,250 + CA264_21105 0.52 +0.5
86,251 - CA264_21105 0.52 +0.2
86,314 + CA264_21105 0.59 +0.0
86,315 - CA264_21105 0.59 +1.0
86,315 - CA264_21105 0.59 -0.1
86,317 + CA264_21105 0.60 +2.0
86,318 - CA264_21105 0.60 +1.0
86,328 + CA264_21105 0.61 +0.3
86,328 + CA264_21105 0.61 +0.7
86,328 + CA264_21105 0.61 +0.4
86,329 - CA264_21105 0.61 +0.2
86,333 + CA264_21105 0.62 +0.3
86,361 + CA264_21105 0.65 +0.3
86,362 - CA264_21105 0.65 -0.5
86,416 + CA264_21105 0.71 +1.2
86,510 + CA264_21105 0.83 -0.0
86,510 + CA264_21105 0.83 +0.5
86,510 + CA264_21105 0.83 +0.0
86,510 + CA264_21105 0.83 -0.5
86,511 - CA264_21105 0.83 -0.5
86,511 - CA264_21105 0.83 +2.2
86,511 - CA264_21105 0.83 +0.2
86,511 - CA264_21105 0.83 +0.4
86,511 - CA264_21105 0.83 -0.5
86,511 - CA264_21105 0.83 -0.9
86,511 - CA264_21105 0.83 -1.0
86,511 - CA264_21105 0.83 +2.4
86,511 - CA264_21105 0.83 +1.0
86,536 - CA264_21105 0.86 -0.1
86,537 + CA264_21105 0.86 +0.1
86,541 + CA264_21105 0.86 +0.5
86,542 - CA264_21105 0.86 +0.4
86,594 - +0.2
86,599 + +1.0
86,617 + -1.0
86,618 - -1.4
86,618 - +1.5
86,618 - -0.5
86,623 + -0.4
86,684 - -0.4
86,734 - -1.1
86,742 - +0.2
86,742 - +1.2
86,742 - -0.3
86,774 + +1.2
86,774 + +0.9
86,775 - +0.1
86,775 - +1.6
86,802 + +1.3
86,820 + +0.9
86,829 - +0.5
86,843 + +0.1
86,865 + +0.2
86,865 + -0.5
86,892 + -0.3
86,897 + -0.0
86,901 + -1.1
86,941 + +3.2
86,944 + +2.5
86,955 - +0.1
86,955 - -0.3
86,957 - +1.7
86,957 - +2.1
86,962 - +0.6
86,963 + -1.2
86,963 + +2.0
86,977 - +0.5
86,977 - +0.4
86,977 - -0.1
86,982 - -1.3
87,046 + -0.6
87,047 - +0.3
87,047 - -0.6
87,047 - +0.4
87,051 - -1.1
87,069 + CA264_21110 0.10 -1.0
87,087 - CA264_21110 0.12 +0.1
87,230 + CA264_21110 0.28 -1.5
87,306 - CA264_21110 0.37 -0.4
87,306 - CA264_21110 0.37 -0.5
87,318 + CA264_21110 0.38 -1.9
87,323 + CA264_21110 0.39 +0.8
87,323 + CA264_21110 0.39 -1.6
87,420 - CA264_21110 0.50 -0.0
87,513 + CA264_21110 0.61 -1.8
87,517 + CA264_21110 0.61 -1.4
87,537 + CA264_21110 0.63 -1.2
87,537 + CA264_21110 0.63 -0.2
87,537 + CA264_21110 0.63 -1.4
87,611 + CA264_21110 0.72 +0.4
87,623 - CA264_21110 0.73 -0.3
87,626 + CA264_21110 0.73 -1.3
87,627 - CA264_21110 0.74 +0.7
87,665 + CA264_21110 0.78 -0.9
87,680 - CA264_21110 0.80 -0.0
87,680 - CA264_21110 0.80 +1.2
87,680 - CA264_21110 0.80 +1.3
87,692 - CA264_21110 0.81 -0.6
87,715 + CA264_21110 0.84 -0.2
87,740 - CA264_21110 0.86 -0.9
87,796 - +0.1
87,846 - -1.1
87,859 - +0.7
87,869 - +0.8
87,883 + -1.4
87,934 - -1.4
87,945 + -0.8
87,946 - -0.6
87,946 - -0.9
87,947 + -1.6
87,947 + -0.3
87,947 + -1.6
87,948 - +0.9
87,991 + -0.6
88,040 + -1.1
88,044 + +1.2
88,045 - +0.6
88,045 - +0.1
88,159 + -0.5
88,166 - +1.8
88,179 - -0.2
88,184 - -1.6
88,197 + -1.8
88,231 + -0.8
88,232 - +0.0
88,259 - +1.4
88,259 - -0.2
88,262 + -0.9
88,289 - -0.0
88,291 + -1.4
88,297 + -1.4
88,301 + -1.9
88,301 + -0.3
88,302 - +0.3
88,395 + -1.3
88,396 - +0.8
88,451 + -0.8
88,458 + +1.2
88,458 + -0.4
88,458 + +0.2
88,458 + -1.0
88,459 - +0.7
88,459 - +0.3
88,459 - +0.9
88,459 - -0.2
88,515 + -0.1
88,516 - +0.1
88,582 + -1.1
88,583 - +2.0
88,583 - +0.5
88,583 - -0.3
88,584 + -1.7
88,622 + CA264_21115 0.13 -2.2
88,666 + CA264_21115 0.16 -2.1
88,703 - CA264_21115 0.18 -0.6
88,728 + CA264_21115 0.20 -3.0
88,728 + CA264_21115 0.20 -1.0
88,729 - CA264_21115 0.20 -1.7
88,729 - CA264_21115 0.20 +0.5
88,742 + CA264_21115 0.21 -0.0
88,794 + CA264_21115 0.25 +0.3
88,794 + CA264_21115 0.25 +0.2
88,816 - CA264_21115 0.27 +1.3

Or see this region's nucleotide sequence