Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20485

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20475 and CA264_20480 are separated by 112 nucleotidesCA264_20480 and CA264_20485 are separated by 24 nucleotidesCA264_20485 and CA264_20490 are separated by 43 nucleotidesCA264_20490 and CA264_20495 are separated by 206 nucleotides CA264_20475: CA264_20475 - hypothetical protein, at 4,718,066 to 4,719,550 _20475 CA264_20480: CA264_20480 - ubiquinol-cytochrome C reductase, at 4,719,663 to 4,720,070 _20480 CA264_20485: CA264_20485 - hypothetical protein, at 4,720,095 to 4,720,523 _20485 CA264_20490: CA264_20490 - hypothetical protein, at 4,720,567 to 4,720,959 _20490 CA264_20495: CA264_20495 - DNA polymerase/3'-5' exonuclease PolX, at 4,721,166 to 4,722,869 _20495 Position (kb) 4720 4721Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4719.105 kb on + strand, within CA264_20475at 4719.105 kb on + strand, within CA264_20475at 4719.105 kb on + strand, within CA264_20475at 4719.105 kb on + strand, within CA264_20475at 4719.106 kb on - strand, within CA264_20475at 4719.106 kb on - strand, within CA264_20475at 4719.132 kb on + strand, within CA264_20475at 4719.210 kb on + strand, within CA264_20475at 4719.249 kb on + strand, within CA264_20475at 4719.250 kb on - strand, within CA264_20475at 4719.250 kb on - strand, within CA264_20475at 4719.250 kb on - strand, within CA264_20475at 4719.250 kb on - strand, within CA264_20475at 4719.264 kb on + strand, within CA264_20475at 4719.314 kb on + strand, within CA264_20475at 4719.315 kb on - strand, within CA264_20475at 4719.323 kb on + strand, within CA264_20475at 4719.337 kb on - strand, within CA264_20475at 4719.534 kb on + strandat 4719.556 kb on + strandat 4719.556 kb on + strandat 4719.664 kb on + strandat 4719.664 kb on + strandat 4719.664 kb on + strandat 4719.665 kb on - strandat 4719.665 kb on - strandat 4719.665 kb on - strandat 4719.665 kb on - strandat 4719.797 kb on + strand, within CA264_20480at 4719.922 kb on + strand, within CA264_20480at 4720.015 kb on - strand, within CA264_20480at 4720.017 kb on + strand, within CA264_20480at 4720.018 kb on - strand, within CA264_20480at 4720.033 kb on + strandat 4720.085 kb on - strandat 4720.097 kb on - strandat 4720.215 kb on - strand, within CA264_20485at 4720.218 kb on + strand, within CA264_20485at 4720.218 kb on + strand, within CA264_20485at 4720.218 kb on + strand, within CA264_20485at 4720.233 kb on + strand, within CA264_20485at 4720.234 kb on - strand, within CA264_20485at 4720.242 kb on + strand, within CA264_20485at 4720.243 kb on - strand, within CA264_20485at 4720.309 kb on - strand, within CA264_20485at 4720.309 kb on - strand, within CA264_20485at 4720.318 kb on + strand, within CA264_20485at 4720.368 kb on + strand, within CA264_20485at 4720.368 kb on + strand, within CA264_20485at 4720.369 kb on - strand, within CA264_20485at 4720.487 kb on + strandat 4720.514 kb on - strandat 4720.535 kb on - strandat 4720.536 kb on + strandat 4720.537 kb on - strandat 4720.565 kb on + strandat 4720.565 kb on + strandat 4720.565 kb on + strandat 4720.566 kb on - strandat 4720.568 kb on + strandat 4720.582 kb on + strandat 4720.619 kb on - strand, within CA264_20490at 4720.625 kb on + strand, within CA264_20490at 4720.917 kb on + strand, within CA264_20490at 4720.952 kb on + strandat 4720.977 kb on + strandat 4720.978 kb on - strandat 4720.989 kb on + strandat 4720.990 kb on - strandat 4720.997 kb on + strandat 4720.998 kb on - strandat 4720.998 kb on - strandat 4721.003 kb on + strandat 4721.004 kb on - strandat 4721.004 kb on - strandat 4721.005 kb on + strandat 4721.006 kb on - strandat 4721.006 kb on - strandat 4721.009 kb on + strandat 4721.009 kb on + strandat 4721.009 kb on + strandat 4721.009 kb on + strandat 4721.010 kb on - strandat 4721.010 kb on - strandat 4721.015 kb on + strandat 4721.016 kb on - strandat 4721.025 kb on + strandat 4721.025 kb on + strandat 4721.061 kb on + strandat 4721.093 kb on - strandat 4721.134 kb on + strandat 4721.160 kb on + strandat 4721.161 kb on - strandat 4721.195 kb on + strandat 4721.417 kb on + strand, within CA264_20495

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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4,719,105 + CA264_20475 0.70 -0.0
4,719,105 + CA264_20475 0.70 -0.4
4,719,105 + CA264_20475 0.70 -1.3
4,719,105 + CA264_20475 0.70 -0.4
4,719,106 - CA264_20475 0.70 +0.6
4,719,106 - CA264_20475 0.70 +0.5
4,719,132 + CA264_20475 0.72 +2.1
4,719,210 + CA264_20475 0.77 +0.9
4,719,249 + CA264_20475 0.80 +0.5
4,719,250 - CA264_20475 0.80 -0.2
4,719,250 - CA264_20475 0.80 +4.0
4,719,250 - CA264_20475 0.80 -0.2
4,719,250 - CA264_20475 0.80 +0.4
4,719,264 + CA264_20475 0.81 -0.2
4,719,314 + CA264_20475 0.84 +0.4
4,719,315 - CA264_20475 0.84 +2.5
4,719,323 + CA264_20475 0.85 +0.8
4,719,337 - CA264_20475 0.86 -1.2
4,719,534 + -0.5
4,719,556 + +0.2
4,719,556 + +0.6
4,719,664 + -0.6
4,719,664 + +1.2
4,719,664 + -1.0
4,719,665 - -1.6
4,719,665 - -1.1
4,719,665 - -2.4
4,719,665 - -1.5
4,719,797 + CA264_20480 0.33 +0.1
4,719,922 + CA264_20480 0.63 -0.4
4,720,015 - CA264_20480 0.86 -1.4
4,720,017 + CA264_20480 0.87 +0.1
4,720,018 - CA264_20480 0.87 -2.0
4,720,033 + +0.4
4,720,085 - -0.0
4,720,097 - -1.1
4,720,215 - CA264_20485 0.28 -0.8
4,720,218 + CA264_20485 0.29 +0.0
4,720,218 + CA264_20485 0.29 -0.3
4,720,218 + CA264_20485 0.29 -2.2
4,720,233 + CA264_20485 0.32 +0.6
4,720,234 - CA264_20485 0.32 +0.1
4,720,242 + CA264_20485 0.34 +0.1
4,720,243 - CA264_20485 0.34 -2.7
4,720,309 - CA264_20485 0.50 -0.1
4,720,309 - CA264_20485 0.50 -2.3
4,720,318 + CA264_20485 0.52 -0.0
4,720,368 + CA264_20485 0.64 +0.3
4,720,368 + CA264_20485 0.64 +1.0
4,720,369 - CA264_20485 0.64 -0.4
4,720,487 + +0.4
4,720,514 - +0.2
4,720,535 - -1.8
4,720,536 + -0.8
4,720,537 - -1.0
4,720,565 + -1.2
4,720,565 + +0.6
4,720,565 + +0.2
4,720,566 - -0.9
4,720,568 + -1.6
4,720,582 + -0.8
4,720,619 - CA264_20490 0.13 -2.3
4,720,625 + CA264_20490 0.15 +1.1
4,720,917 + CA264_20490 0.89 -1.0
4,720,952 + -0.7
4,720,977 + -1.2
4,720,978 - -1.7
4,720,989 + -0.5
4,720,990 - -0.8
4,720,997 + -0.3
4,720,998 - -2.0
4,720,998 - -1.3
4,721,003 + +0.4
4,721,004 - -1.0
4,721,004 - -1.2
4,721,005 + -0.4
4,721,006 - +0.1
4,721,006 - -1.7
4,721,009 + +1.0
4,721,009 + -0.9
4,721,009 + -0.7
4,721,009 + -0.3
4,721,010 - -0.4
4,721,010 - +0.9
4,721,015 + -1.4
4,721,016 - -1.0
4,721,025 + -0.8
4,721,025 + -1.0
4,721,061 + -1.0
4,721,093 - -0.6
4,721,134 + -1.6
4,721,160 + -1.0
4,721,161 - -0.4
4,721,195 + -0.9
4,721,417 + CA264_20495 0.15 +0.1

Or see this region's nucleotide sequence