Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19795

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19790 and CA264_19795 are separated by 269 nucleotidesCA264_19795 and CA264_19800 are separated by 214 nucleotides CA264_19790: CA264_19790 - acyl-CoA dehydrogenase, at 4,567,946 to 4,569,124 _19790 CA264_19795: CA264_19795 - hypothetical protein, at 4,569,394 to 4,569,900 _19795 CA264_19800: CA264_19800 - Holliday junction branch migration DNA helicase RuvB, at 4,570,115 to 4,571,158 _19800 Position (kb) 4569 4570Strain fitness (log2 ratio) -3 -2 -1 0 1at 4568.655 kb on + strand, within CA264_19790at 4568.655 kb on + strand, within CA264_19790at 4568.655 kb on + strand, within CA264_19790at 4568.741 kb on + strand, within CA264_19790at 4568.741 kb on + strand, within CA264_19790at 4568.741 kb on + strand, within CA264_19790at 4568.742 kb on - strand, within CA264_19790at 4568.760 kb on - strand, within CA264_19790at 4568.773 kb on + strand, within CA264_19790at 4568.774 kb on - strand, within CA264_19790at 4568.774 kb on - strand, within CA264_19790at 4568.845 kb on + strand, within CA264_19790at 4568.916 kb on + strand, within CA264_19790at 4569.053 kb on + strandat 4569.053 kb on + strandat 4569.053 kb on + strandat 4569.053 kb on + strandat 4569.053 kb on + strandat 4569.157 kb on + strandat 4569.164 kb on + strandat 4569.164 kb on + strandat 4569.166 kb on + strandat 4569.205 kb on - strandat 4569.226 kb on + strandat 4569.261 kb on + strandat 4569.261 kb on + strandat 4569.265 kb on + strandat 4569.300 kb on + strandat 4569.300 kb on + strandat 4569.300 kb on + strandat 4569.301 kb on - strandat 4569.302 kb on + strandat 4569.308 kb on - strandat 4569.314 kb on - strandat 4569.317 kb on + strandat 4569.380 kb on + strandat 4569.443 kb on + strandat 4569.485 kb on + strand, within CA264_19795at 4569.517 kb on - strand, within CA264_19795at 4569.563 kb on + strand, within CA264_19795at 4569.720 kb on + strand, within CA264_19795at 4569.721 kb on - strand, within CA264_19795at 4569.725 kb on - strand, within CA264_19795at 4569.725 kb on - strand, within CA264_19795at 4569.725 kb on - strand, within CA264_19795at 4569.750 kb on + strand, within CA264_19795at 4569.750 kb on + strand, within CA264_19795at 4569.750 kb on + strand, within CA264_19795at 4569.796 kb on + strand, within CA264_19795at 4569.799 kb on - strand, within CA264_19795at 4569.900 kb on + strandat 4569.900 kb on + strandat 4569.901 kb on - strandat 4569.901 kb on - strandat 4569.931 kb on + strandat 4569.932 kb on - strandat 4569.932 kb on - strandat 4570.074 kb on + strandat 4570.108 kb on + strandat 4570.109 kb on - strandat 4570.110 kb on + strandat 4570.110 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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4,568,655 + CA264_19790 0.60 -1.4
4,568,655 + CA264_19790 0.60 -1.2
4,568,655 + CA264_19790 0.60 +0.2
4,568,741 + CA264_19790 0.67 -0.4
4,568,741 + CA264_19790 0.67 -0.5
4,568,741 + CA264_19790 0.67 -2.7
4,568,742 - CA264_19790 0.68 +0.2
4,568,760 - CA264_19790 0.69 -1.5
4,568,773 + CA264_19790 0.70 +1.1
4,568,774 - CA264_19790 0.70 +0.4
4,568,774 - CA264_19790 0.70 +0.4
4,568,845 + CA264_19790 0.76 -1.7
4,568,916 + CA264_19790 0.82 -2.3
4,569,053 + -1.7
4,569,053 + -2.8
4,569,053 + -2.9
4,569,053 + -1.9
4,569,053 + -1.3
4,569,157 + -0.8
4,569,164 + -2.8
4,569,164 + -1.6
4,569,166 + -1.5
4,569,205 - -1.6
4,569,226 + -1.6
4,569,261 + -1.9
4,569,261 + -0.9
4,569,265 + -2.2
4,569,300 + -2.1
4,569,300 + +0.9
4,569,300 + -1.9
4,569,301 - -1.5
4,569,302 + -2.0
4,569,308 - -1.0
4,569,314 - -0.2
4,569,317 + +0.7
4,569,380 + -0.7
4,569,443 + -1.5
4,569,485 + CA264_19795 0.18 -1.8
4,569,517 - CA264_19795 0.24 -1.0
4,569,563 + CA264_19795 0.33 -0.7
4,569,720 + CA264_19795 0.64 -2.6
4,569,721 - CA264_19795 0.64 +0.2
4,569,725 - CA264_19795 0.65 -2.2
4,569,725 - CA264_19795 0.65 -1.5
4,569,725 - CA264_19795 0.65 -1.3
4,569,750 + CA264_19795 0.70 -2.9
4,569,750 + CA264_19795 0.70 -0.7
4,569,750 + CA264_19795 0.70 -1.5
4,569,796 + CA264_19795 0.79 -0.5
4,569,799 - CA264_19795 0.80 -1.2
4,569,900 + -2.6
4,569,900 + -1.8
4,569,901 - -0.3
4,569,901 - -0.0
4,569,931 + -2.7
4,569,932 - -2.0
4,569,932 - -0.5
4,570,074 + -0.8
4,570,108 + -0.6
4,570,109 - -0.4
4,570,110 + -3.5
4,570,110 + -2.5

Or see this region's nucleotide sequence