Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19535

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19525 and CA264_19530 are separated by 100 nucleotidesCA264_19530 and CA264_19535 are separated by 4 nucleotidesCA264_19535 and CA264_19540 are separated by 178 nucleotides CA264_19525: CA264_19525 - phosphatase, at 4,512,052 to 4,512,990 _19525 CA264_19530: CA264_19530 - hypothetical protein, at 4,513,091 to 4,513,534 _19530 CA264_19535: CA264_19535 - hypothetical protein, at 4,513,539 to 4,514,108 _19535 CA264_19540: CA264_19540 - hypothetical protein, at 4,514,287 to 4,515,126 _19540 Position (kb) 4513 4514 4515Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4512.633 kb on - strand, within CA264_19525at 4512.633 kb on - strand, within CA264_19525at 4512.668 kb on - strand, within CA264_19525at 4512.679 kb on + strand, within CA264_19525at 4512.679 kb on + strand, within CA264_19525at 4512.680 kb on - strand, within CA264_19525at 4512.680 kb on - strand, within CA264_19525at 4512.680 kb on - strand, within CA264_19525at 4512.681 kb on + strand, within CA264_19525at 4512.699 kb on + strand, within CA264_19525at 4512.700 kb on - strand, within CA264_19525at 4512.700 kb on - strand, within CA264_19525at 4512.785 kb on - strand, within CA264_19525at 4512.898 kb on + strandat 4513.004 kb on - strandat 4513.016 kb on + strandat 4513.016 kb on + strandat 4513.087 kb on + strandat 4513.088 kb on - strandat 4513.227 kb on + strand, within CA264_19530at 4513.257 kb on + strand, within CA264_19530at 4513.271 kb on + strand, within CA264_19530at 4513.271 kb on + strand, within CA264_19530at 4513.289 kb on + strand, within CA264_19530at 4513.290 kb on - strand, within CA264_19530at 4513.290 kb on - strand, within CA264_19530at 4513.290 kb on - strand, within CA264_19530at 4513.290 kb on - strand, within CA264_19530at 4513.296 kb on + strand, within CA264_19530at 4513.296 kb on + strand, within CA264_19530at 4513.297 kb on - strand, within CA264_19530at 4513.297 kb on - strand, within CA264_19530at 4513.300 kb on - strand, within CA264_19530at 4513.483 kb on - strand, within CA264_19530at 4513.527 kb on + strandat 4513.527 kb on + strandat 4513.527 kb on + strandat 4513.564 kb on + strandat 4513.564 kb on + strandat 4513.677 kb on - strand, within CA264_19535at 4513.677 kb on - strand, within CA264_19535at 4513.732 kb on + strand, within CA264_19535at 4513.733 kb on - strand, within CA264_19535at 4513.802 kb on + strand, within CA264_19535at 4513.803 kb on - strand, within CA264_19535at 4513.833 kb on + strand, within CA264_19535at 4513.850 kb on + strand, within CA264_19535at 4513.979 kb on + strand, within CA264_19535at 4513.979 kb on + strand, within CA264_19535at 4514.043 kb on + strand, within CA264_19535at 4514.043 kb on + strand, within CA264_19535at 4514.150 kb on + strandat 4514.165 kb on + strandat 4514.209 kb on - strandat 4514.244 kb on + strandat 4514.284 kb on + strandat 4514.288 kb on + strandat 4514.315 kb on + strandat 4514.345 kb on + strandat 4514.451 kb on + strand, within CA264_19540at 4514.533 kb on - strand, within CA264_19540at 4514.534 kb on + strand, within CA264_19540at 4514.535 kb on - strand, within CA264_19540at 4514.593 kb on + strand, within CA264_19540at 4514.645 kb on - strand, within CA264_19540at 4514.648 kb on + strand, within CA264_19540at 4514.648 kb on + strand, within CA264_19540at 4514.649 kb on - strand, within CA264_19540at 4514.652 kb on + strand, within CA264_19540at 4514.652 kb on + strand, within CA264_19540at 4514.653 kb on - strand, within CA264_19540at 4514.653 kb on - strand, within CA264_19540at 4514.681 kb on + strand, within CA264_19540at 4514.701 kb on + strand, within CA264_19540at 4514.816 kb on + strand, within CA264_19540at 4514.816 kb on + strand, within CA264_19540at 4514.816 kb on + strand, within CA264_19540at 4514.817 kb on - strand, within CA264_19540at 4514.873 kb on - strand, within CA264_19540at 4514.925 kb on + strand, within CA264_19540at 4514.956 kb on - strand, within CA264_19540at 4514.964 kb on + strand, within CA264_19540at 4514.964 kb on + strand, within CA264_19540at 4514.964 kb on + strand, within CA264_19540at 4514.965 kb on - strand, within CA264_19540at 4514.976 kb on + strand, within CA264_19540at 4514.977 kb on - strand, within CA264_19540at 4515.001 kb on - strand, within CA264_19540at 4515.001 kb on - strand, within CA264_19540at 4515.003 kb on + strand, within CA264_19540at 4515.004 kb on - strand, within CA264_19540at 4515.012 kb on + strand, within CA264_19540at 4515.013 kb on - strand, within CA264_19540at 4515.056 kb on + strandat 4515.057 kb on - strandat 4515.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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4,512,633 - CA264_19525 0.62 -0.6
4,512,633 - CA264_19525 0.62 +0.4
4,512,668 - CA264_19525 0.66 -2.0
4,512,679 + CA264_19525 0.67 +1.2
4,512,679 + CA264_19525 0.67 -0.4
4,512,680 - CA264_19525 0.67 -0.8
4,512,680 - CA264_19525 0.67 -2.1
4,512,680 - CA264_19525 0.67 -1.4
4,512,681 + CA264_19525 0.67 -0.3
4,512,699 + CA264_19525 0.69 -0.2
4,512,700 - CA264_19525 0.69 -2.1
4,512,700 - CA264_19525 0.69 -1.4
4,512,785 - CA264_19525 0.78 +0.4
4,512,898 + -0.3
4,513,004 - -2.5
4,513,016 + -0.2
4,513,016 + -0.9
4,513,087 + -0.7
4,513,088 - -1.7
4,513,227 + CA264_19530 0.31 +0.2
4,513,257 + CA264_19530 0.37 -1.9
4,513,271 + CA264_19530 0.41 -1.7
4,513,271 + CA264_19530 0.41 -2.4
4,513,289 + CA264_19530 0.45 -1.2
4,513,290 - CA264_19530 0.45 -1.7
4,513,290 - CA264_19530 0.45 -1.2
4,513,290 - CA264_19530 0.45 +0.4
4,513,290 - CA264_19530 0.45 -1.5
4,513,296 + CA264_19530 0.46 -1.5
4,513,296 + CA264_19530 0.46 -1.0
4,513,297 - CA264_19530 0.46 -1.7
4,513,297 - CA264_19530 0.46 -3.1
4,513,300 - CA264_19530 0.47 -1.7
4,513,483 - CA264_19530 0.88 -1.1
4,513,527 + -0.1
4,513,527 + +0.5
4,513,527 + +0.6
4,513,564 + -0.6
4,513,564 + +0.0
4,513,677 - CA264_19535 0.24 -1.8
4,513,677 - CA264_19535 0.24 -3.0
4,513,732 + CA264_19535 0.34 -2.3
4,513,733 - CA264_19535 0.34 -2.0
4,513,802 + CA264_19535 0.46 +0.3
4,513,803 - CA264_19535 0.46 -2.5
4,513,833 + CA264_19535 0.52 -1.1
4,513,850 + CA264_19535 0.55 -0.7
4,513,979 + CA264_19535 0.77 +1.0
4,513,979 + CA264_19535 0.77 -0.6
4,514,043 + CA264_19535 0.88 -1.1
4,514,043 + CA264_19535 0.88 -1.0
4,514,150 + +1.8
4,514,165 + +0.5
4,514,209 - -2.0
4,514,244 + +1.5
4,514,284 + -0.1
4,514,288 + -0.0
4,514,315 + +0.5
4,514,345 + +1.4
4,514,451 + CA264_19540 0.20 +0.3
4,514,533 - CA264_19540 0.29 -2.2
4,514,534 + CA264_19540 0.29 +0.3
4,514,535 - CA264_19540 0.30 -2.2
4,514,593 + CA264_19540 0.36 +0.4
4,514,645 - CA264_19540 0.43 -1.5
4,514,648 + CA264_19540 0.43 +0.5
4,514,648 + CA264_19540 0.43 +0.5
4,514,649 - CA264_19540 0.43 -1.2
4,514,652 + CA264_19540 0.43 +0.8
4,514,652 + CA264_19540 0.43 -0.4
4,514,653 - CA264_19540 0.44 -1.8
4,514,653 - CA264_19540 0.44 +0.4
4,514,681 + CA264_19540 0.47 +1.4
4,514,701 + CA264_19540 0.49 +0.6
4,514,816 + CA264_19540 0.63 +0.8
4,514,816 + CA264_19540 0.63 +0.1
4,514,816 + CA264_19540 0.63 +0.4
4,514,817 - CA264_19540 0.63 -2.3
4,514,873 - CA264_19540 0.70 -2.9
4,514,925 + CA264_19540 0.76 +0.3
4,514,956 - CA264_19540 0.80 -0.9
4,514,964 + CA264_19540 0.81 +0.6
4,514,964 + CA264_19540 0.81 +0.4
4,514,964 + CA264_19540 0.81 +0.6
4,514,965 - CA264_19540 0.81 +0.4
4,514,976 + CA264_19540 0.82 +2.0
4,514,977 - CA264_19540 0.82 +0.2
4,515,001 - CA264_19540 0.85 -2.2
4,515,001 - CA264_19540 0.85 -2.1
4,515,003 + CA264_19540 0.85 +0.4
4,515,004 - CA264_19540 0.85 -2.3
4,515,012 + CA264_19540 0.86 +0.4
4,515,013 - CA264_19540 0.86 -2.0
4,515,056 + +0.6
4,515,057 - -2.3
4,515,075 + -1.1

Or see this region's nucleotide sequence