Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19515

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19505 and CA264_19510 are separated by 97 nucleotidesCA264_19510 and CA264_19515 are separated by 6 nucleotidesCA264_19515 and CA264_19520 are separated by 208 nucleotides CA264_19505: CA264_19505 - Fe-S protein assembly chaperone HscA, at 4,505,986 to 4,507,851 _19505 CA264_19510: CA264_19510 - hypothetical protein, at 4,507,949 to 4,508,299 _19510 CA264_19515: CA264_19515 - malate dehydrogenase, at 4,508,306 to 4,509,373 _19515 CA264_19520: CA264_19520 - hypothetical protein, at 4,509,582 to 4,511,963 _19520 Position (kb) 4508 4509 4510Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4507.881 kb on + strandat 4507.891 kb on - strandat 4507.893 kb on - strandat 4507.911 kb on - strandat 4507.911 kb on - strandat 4507.913 kb on + strandat 4507.913 kb on + strandat 4507.914 kb on - strandat 4507.914 kb on - strandat 4507.914 kb on - strandat 4507.936 kb on + strandat 4507.941 kb on - strandat 4507.941 kb on - strandat 4507.941 kb on - strandat 4507.987 kb on + strand, within CA264_19510at 4507.999 kb on - strand, within CA264_19510at 4508.008 kb on + strand, within CA264_19510at 4508.008 kb on + strand, within CA264_19510at 4508.063 kb on + strand, within CA264_19510at 4508.083 kb on - strand, within CA264_19510at 4508.088 kb on + strand, within CA264_19510at 4508.089 kb on - strand, within CA264_19510at 4508.112 kb on + strand, within CA264_19510at 4508.207 kb on + strand, within CA264_19510at 4508.208 kb on - strand, within CA264_19510at 4508.210 kb on + strand, within CA264_19510at 4508.252 kb on + strand, within CA264_19510at 4508.252 kb on + strand, within CA264_19510at 4508.252 kb on + strand, within CA264_19510at 4508.253 kb on - strand, within CA264_19510at 4508.253 kb on - strand, within CA264_19510at 4509.377 kb on - strandat 4509.377 kb on - strandat 4509.412 kb on + strandat 4509.412 kb on + strandat 4509.472 kb on + strandat 4509.494 kb on + strandat 4509.582 kb on - strandat 4509.594 kb on - strandat 4509.595 kb on + strandat 4509.595 kb on + strandat 4509.598 kb on + strandat 4509.599 kb on - strandat 4509.678 kb on + strandat 4509.679 kb on - strandat 4509.691 kb on - strandat 4509.764 kb on - strandat 4509.841 kb on + strand, within CA264_19520at 4509.946 kb on - strand, within CA264_19520at 4509.946 kb on - strand, within CA264_19520at 4509.946 kb on - strand, within CA264_19520at 4509.958 kb on + strand, within CA264_19520at 4509.958 kb on + strand, within CA264_19520at 4510.078 kb on - strand, within CA264_19520at 4510.078 kb on - strand, within CA264_19520at 4510.079 kb on + strand, within CA264_19520at 4510.080 kb on - strand, within CA264_19520at 4510.105 kb on + strand, within CA264_19520at 4510.106 kb on - strand, within CA264_19520at 4510.170 kb on - strand, within CA264_19520at 4510.170 kb on - strand, within CA264_19520at 4510.217 kb on - strand, within CA264_19520at 4510.305 kb on + strand, within CA264_19520at 4510.306 kb on - strand, within CA264_19520at 4510.353 kb on + strand, within CA264_19520

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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4,507,881 + +1.0
4,507,891 - +4.6
4,507,893 - +4.3
4,507,911 - +3.7
4,507,911 - -0.1
4,507,913 + +1.3
4,507,913 + +0.0
4,507,914 - +3.7
4,507,914 - +2.8
4,507,914 - +3.8
4,507,936 + +0.2
4,507,941 - -3.4
4,507,941 - -2.1
4,507,941 - -1.3
4,507,987 + CA264_19510 0.11 +1.3
4,507,999 - CA264_19510 0.14 -2.3
4,508,008 + CA264_19510 0.17 -0.2
4,508,008 + CA264_19510 0.17 +1.1
4,508,063 + CA264_19510 0.32 +0.2
4,508,083 - CA264_19510 0.38 -3.1
4,508,088 + CA264_19510 0.40 +0.2
4,508,089 - CA264_19510 0.40 -0.5
4,508,112 + CA264_19510 0.46 -0.5
4,508,207 + CA264_19510 0.74 -1.2
4,508,208 - CA264_19510 0.74 -1.6
4,508,210 + CA264_19510 0.74 -0.9
4,508,252 + CA264_19510 0.86 +0.0
4,508,252 + CA264_19510 0.86 +0.1
4,508,252 + CA264_19510 0.86 -1.6
4,508,253 - CA264_19510 0.87 +0.0
4,508,253 - CA264_19510 0.87 -1.9
4,509,377 - +1.0
4,509,377 - +2.0
4,509,412 + +1.0
4,509,412 + +0.3
4,509,472 + -0.7
4,509,494 + +2.0
4,509,582 - -0.6
4,509,594 - -1.6
4,509,595 + -0.4
4,509,595 + +0.4
4,509,598 + +0.0
4,509,599 - -0.7
4,509,678 + -2.5
4,509,679 - -2.2
4,509,691 - -1.5
4,509,764 - +0.7
4,509,841 + CA264_19520 0.11 -1.1
4,509,946 - CA264_19520 0.15 +0.0
4,509,946 - CA264_19520 0.15 -0.6
4,509,946 - CA264_19520 0.15 -1.4
4,509,958 + CA264_19520 0.16 -1.0
4,509,958 + CA264_19520 0.16 -1.0
4,510,078 - CA264_19520 0.21 -0.7
4,510,078 - CA264_19520 0.21 -1.6
4,510,079 + CA264_19520 0.21 -0.8
4,510,080 - CA264_19520 0.21 -0.7
4,510,105 + CA264_19520 0.22 -1.6
4,510,106 - CA264_19520 0.22 -0.5
4,510,170 - CA264_19520 0.25 -0.1
4,510,170 - CA264_19520 0.25 +0.4
4,510,217 - CA264_19520 0.27 -0.5
4,510,305 + CA264_19520 0.30 -1.5
4,510,306 - CA264_19520 0.30 -0.0
4,510,353 + CA264_19520 0.32 -0.4

Or see this region's nucleotide sequence