Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18015

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18010 and CA264_18015 are separated by 792 nucleotidesCA264_18015 and CA264_18020 are separated by 155 nucleotidesCA264_18020 and CA264_18025 are separated by 43 nucleotides CA264_18010: CA264_18010 - 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase, at 4,187,085 to 4,188,122 _18010 CA264_18015: CA264_18015 - kynureninase, at 4,188,915 to 4,190,195 _18015 CA264_18020: CA264_18020 - ABC transporter permease, at 4,190,351 to 4,190,845 _18020 CA264_18025: CA264_18025 - sodium/alanine symporter, at 4,190,889 to 4,192,283 _18025 Position (kb) 4188 4189 4190 4191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4187.959 kb on - strand, within CA264_18010at 4188.013 kb on - strand, within CA264_18010at 4188.121 kb on - strandat 4188.134 kb on + strandat 4188.135 kb on - strandat 4188.136 kb on + strandat 4188.139 kb on + strandat 4188.140 kb on - strandat 4188.140 kb on - strandat 4188.187 kb on + strandat 4188.190 kb on + strandat 4188.190 kb on + strandat 4188.190 kb on + strandat 4188.190 kb on + strandat 4188.190 kb on + strandat 4188.191 kb on - strandat 4188.193 kb on - strandat 4188.324 kb on + strandat 4188.327 kb on + strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.387 kb on + strandat 4188.388 kb on - strandat 4188.395 kb on + strandat 4188.396 kb on - strandat 4188.396 kb on - strandat 4188.399 kb on + strandat 4188.399 kb on + strandat 4188.641 kb on - strandat 4188.641 kb on - strandat 4188.748 kb on - strandat 4188.751 kb on + strandat 4188.751 kb on + strandat 4188.752 kb on - strandat 4188.752 kb on - strandat 4188.754 kb on + strandat 4188.755 kb on - strandat 4188.854 kb on - strandat 4188.862 kb on - strandat 4188.921 kb on + strandat 4189.092 kb on + strand, within CA264_18015at 4189.093 kb on - strand, within CA264_18015at 4189.093 kb on - strand, within CA264_18015at 4189.093 kb on - strand, within CA264_18015at 4189.093 kb on - strand, within CA264_18015at 4189.094 kb on + strand, within CA264_18015at 4189.095 kb on - strand, within CA264_18015at 4189.095 kb on - strand, within CA264_18015at 4189.148 kb on + strand, within CA264_18015at 4189.153 kb on - strand, within CA264_18015at 4189.163 kb on - strand, within CA264_18015at 4189.263 kb on + strand, within CA264_18015at 4189.327 kb on - strand, within CA264_18015at 4189.360 kb on - strand, within CA264_18015at 4189.360 kb on - strand, within CA264_18015at 4189.440 kb on - strand, within CA264_18015at 4189.492 kb on - strand, within CA264_18015at 4189.495 kb on - strand, within CA264_18015at 4189.653 kb on - strand, within CA264_18015at 4189.653 kb on - strand, within CA264_18015at 4189.682 kb on - strand, within CA264_18015at 4189.683 kb on + strand, within CA264_18015at 4189.683 kb on + strand, within CA264_18015at 4189.684 kb on - strand, within CA264_18015at 4189.684 kb on - strand, within CA264_18015at 4189.684 kb on - strand, within CA264_18015at 4189.684 kb on - strand, within CA264_18015at 4190.075 kb on + strandat 4190.118 kb on - strandat 4190.146 kb on + strandat 4190.147 kb on - strandat 4190.147 kb on - strandat 4190.147 kb on - strandat 4190.147 kb on - strandat 4190.147 kb on - strandat 4190.189 kb on - strandat 4190.194 kb on - strandat 4190.233 kb on + strandat 4190.298 kb on + strandat 4190.340 kb on + strandat 4190.342 kb on + strandat 4190.343 kb on - strandat 4190.382 kb on - strandat 4190.396 kb on + strandat 4190.397 kb on - strandat 4190.460 kb on + strand, within CA264_18020at 4190.763 kb on + strand, within CA264_18020at 4190.764 kb on - strand, within CA264_18020at 4190.764 kb on - strand, within CA264_18020at 4190.807 kb on - strandat 4190.884 kb on - strandat 4190.892 kb on + strandat 4190.892 kb on + strandat 4190.893 kb on - strandat 4190.893 kb on - strandat 4190.941 kb on + strandat 4191.017 kb on - strandat 4191.029 kb on + strand, within CA264_18025at 4191.040 kb on - strand, within CA264_18025at 4191.040 kb on - strand, within CA264_18025at 4191.050 kb on + strand, within CA264_18025at 4191.085 kb on + strand, within CA264_18025at 4191.091 kb on + strand, within CA264_18025at 4191.092 kb on - strand, within CA264_18025at 4191.098 kb on - strand, within CA264_18025at 4191.098 kb on - strand, within CA264_18025at 4191.100 kb on + strand, within CA264_18025at 4191.151 kb on + strand, within CA264_18025at 4191.158 kb on - strand, within CA264_18025

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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4,187,959 - CA264_18010 0.84 +2.6
4,188,013 - CA264_18010 0.89 -0.2
4,188,121 - +1.3
4,188,134 + +2.1
4,188,135 - +1.1
4,188,136 + +0.9
4,188,139 + -1.1
4,188,140 - +0.5
4,188,140 - +0.1
4,188,187 + +2.3
4,188,190 + +1.2
4,188,190 + +0.7
4,188,190 + -0.2
4,188,190 + +0.7
4,188,190 + +1.0
4,188,191 - +1.3
4,188,193 - -0.2
4,188,324 + +0.5
4,188,327 + +0.5
4,188,328 - -0.2
4,188,328 - +1.2
4,188,328 - -0.6
4,188,328 - +2.2
4,188,328 - -0.0
4,188,328 - +0.5
4,188,387 + +2.7
4,188,388 - +1.8
4,188,395 + +0.4
4,188,396 - +1.3
4,188,396 - -0.2
4,188,399 + -0.8
4,188,399 + +1.0
4,188,641 - -0.6
4,188,641 - -0.9
4,188,748 - -1.5
4,188,751 + -2.6
4,188,751 + -0.4
4,188,752 - -1.6
4,188,752 - -0.6
4,188,754 + -2.8
4,188,755 - +0.2
4,188,854 - -1.3
4,188,862 - +1.2
4,188,921 + -2.4
4,189,092 + CA264_18015 0.14 -2.0
4,189,093 - CA264_18015 0.14 +0.1
4,189,093 - CA264_18015 0.14 -0.2
4,189,093 - CA264_18015 0.14 -0.1
4,189,093 - CA264_18015 0.14 -0.6
4,189,094 + CA264_18015 0.14 +0.2
4,189,095 - CA264_18015 0.14 +0.1
4,189,095 - CA264_18015 0.14 -0.6
4,189,148 + CA264_18015 0.18 -0.9
4,189,153 - CA264_18015 0.19 -1.6
4,189,163 - CA264_18015 0.19 -0.1
4,189,263 + CA264_18015 0.27 -0.1
4,189,327 - CA264_18015 0.32 +0.3
4,189,360 - CA264_18015 0.35 +1.2
4,189,360 - CA264_18015 0.35 +1.0
4,189,440 - CA264_18015 0.41 +1.3
4,189,492 - CA264_18015 0.45 +0.9
4,189,495 - CA264_18015 0.45 +1.2
4,189,653 - CA264_18015 0.58 +0.7
4,189,653 - CA264_18015 0.58 +2.3
4,189,682 - CA264_18015 0.60 +0.9
4,189,683 + CA264_18015 0.60 -2.7
4,189,683 + CA264_18015 0.60 -2.9
4,189,684 - CA264_18015 0.60 -0.1
4,189,684 - CA264_18015 0.60 +0.2
4,189,684 - CA264_18015 0.60 +1.6
4,189,684 - CA264_18015 0.60 +0.6
4,190,075 + -0.9
4,190,118 - +1.1
4,190,146 + -0.8
4,190,147 - +1.1
4,190,147 - +2.4
4,190,147 - +2.3
4,190,147 - +1.0
4,190,147 - +1.1
4,190,189 - +1.4
4,190,194 - +0.0
4,190,233 + +0.9
4,190,298 + -0.1
4,190,340 + +1.0
4,190,342 + +0.2
4,190,343 - -0.2
4,190,382 - +0.4
4,190,396 + -2.7
4,190,397 - -1.0
4,190,460 + CA264_18020 0.22 -0.5
4,190,763 + CA264_18020 0.83 -0.5
4,190,764 - CA264_18020 0.83 +0.6
4,190,764 - CA264_18020 0.83 +0.8
4,190,807 - -0.1
4,190,884 - -0.6
4,190,892 + -0.3
4,190,892 + -0.4
4,190,893 - -0.4
4,190,893 - -1.1
4,190,941 + -1.5
4,191,017 - -0.2
4,191,029 + CA264_18025 0.10 -0.7
4,191,040 - CA264_18025 0.11 -0.6
4,191,040 - CA264_18025 0.11 -0.6
4,191,050 + CA264_18025 0.12 -0.2
4,191,085 + CA264_18025 0.14 -1.7
4,191,091 + CA264_18025 0.14 +0.9
4,191,092 - CA264_18025 0.15 +1.3
4,191,098 - CA264_18025 0.15 +0.6
4,191,098 - CA264_18025 0.15 +0.3
4,191,100 + CA264_18025 0.15 -1.2
4,191,151 + CA264_18025 0.19 +0.3
4,191,158 - CA264_18025 0.19 -0.2

Or see this region's nucleotide sequence