Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17270

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17265 and CA264_17270 are separated by 139 nucleotidesCA264_17270 and CA264_17275 are separated by 31 nucleotidesCA264_17275 and CA264_17280 overlap by 17 nucleotidesCA264_17280 and CA264_17285 are separated by 68 nucleotides CA264_17265: CA264_17265 - exodeoxyribonuclease III, at 4,014,804 to 4,015,565 _17265 CA264_17270: CA264_17270 - hypothetical protein, at 4,015,705 to 4,019,016 _17270 CA264_17275: CA264_17275 - ATP-binding protein, at 4,019,048 to 4,019,473 _17275 CA264_17280: CA264_17280 - rRNA maturation RNase YbeY, at 4,019,457 to 4,019,885 _17280 CA264_17285: CA264_17285 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 4,019,954 to 4,021,816 _17285 Position (kb) 4015 4016 4017 4018 4019 4020Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4014.705 kb on - strandat 4014.707 kb on - strandat 4014.707 kb on - strandat 4014.732 kb on - strandat 4014.732 kb on - strandat 4014.765 kb on - strandat 4014.778 kb on + strandat 4014.786 kb on - strandat 4014.794 kb on - strandat 4014.794 kb on - strandat 4014.795 kb on + strandat 4014.796 kb on - strandat 4014.796 kb on - strandat 4014.796 kb on - strandat 4014.796 kb on - strandat 4014.796 kb on - strandat 4014.796 kb on - strandat 4014.797 kb on + strandat 4014.815 kb on + strandat 4014.815 kb on + strandat 4014.815 kb on + strandat 4014.816 kb on - strandat 4014.816 kb on - strandat 4014.819 kb on + strandat 4014.819 kb on + strandat 4014.910 kb on + strand, within CA264_17265at 4014.967 kb on + strand, within CA264_17265at 4014.967 kb on + strand, within CA264_17265at 4014.967 kb on + strand, within CA264_17265at 4014.968 kb on - strand, within CA264_17265at 4014.968 kb on - strand, within CA264_17265at 4014.968 kb on - strandat 4014.968 kb on - strand, within CA264_17265at 4014.968 kb on - strand, within CA264_17265at 4014.968 kb on - strand, within CA264_17265at 4014.969 kb on + strand, within CA264_17265at 4014.969 kb on + strand, within CA264_17265at 4014.970 kb on - strand, within CA264_17265at 4014.970 kb on - strand, within CA264_17265at 4014.985 kb on + strand, within CA264_17265at 4014.996 kb on + strand, within CA264_17265at 4014.997 kb on - strand, within CA264_17265at 4014.997 kb on - strand, within CA264_17265at 4015.065 kb on + strand, within CA264_17265at 4015.065 kb on + strand, within CA264_17265at 4015.065 kb on + strand, within CA264_17265at 4015.065 kb on + strand, within CA264_17265at 4015.066 kb on - strand, within CA264_17265at 4015.125 kb on + strand, within CA264_17265at 4015.125 kb on + strand, within CA264_17265at 4015.126 kb on - strand, within CA264_17265at 4015.198 kb on - strand, within CA264_17265at 4015.202 kb on - strand, within CA264_17265at 4015.401 kb on + strand, within CA264_17265at 4015.403 kb on + strand, within CA264_17265at 4015.404 kb on - strand, within CA264_17265at 4015.416 kb on + strand, within CA264_17265at 4015.462 kb on - strand, within CA264_17265at 4015.462 kb on - strand, within CA264_17265at 4015.463 kb on + strand, within CA264_17265at 4015.463 kb on + strand, within CA264_17265at 4015.464 kb on - strand, within CA264_17265at 4015.510 kb on + strandat 4015.564 kb on - strandat 4015.577 kb on + strandat 4015.646 kb on - strandat 4015.651 kb on + strandat 4015.652 kb on - strandat 4015.686 kb on - strandat 4015.713 kb on + strandat 4015.714 kb on - strandat 4015.825 kb on + strandat 4015.827 kb on + strandat 4015.834 kb on + strandat 4015.858 kb on + strandat 4015.870 kb on + strandat 4015.870 kb on + strandat 4015.871 kb on - strandat 4015.915 kb on + strandat 4015.915 kb on + strandat 4015.916 kb on - strandat 4015.957 kb on - strandat 4016.003 kb on + strandat 4016.012 kb on - strandat 4016.012 kb on - strandat 4016.146 kb on - strand, within CA264_17270at 4016.149 kb on + strand, within CA264_17270at 4016.176 kb on + strand, within CA264_17270at 4016.176 kb on + strand, within CA264_17270at 4016.176 kb on + strand, within CA264_17270at 4016.176 kb on + strand, within CA264_17270at 4016.177 kb on - strand, within CA264_17270at 4016.177 kb on - strand, within CA264_17270at 4016.177 kb on - strand, within CA264_17270at 4016.177 kb on - strand, within CA264_17270at 4016.177 kb on - strand, within CA264_17270at 4016.266 kb on - strand, within CA264_17270at 4016.266 kb on - strand, within CA264_17270at 4016.266 kb on - strand, within CA264_17270at 4016.275 kb on + strand, within CA264_17270at 4016.306 kb on + strand, within CA264_17270at 4016.392 kb on + strand, within CA264_17270at 4016.402 kb on - strand, within CA264_17270at 4016.402 kb on - strand, within CA264_17270at 4016.402 kb on - strand, within CA264_17270at 4016.424 kb on - strand, within CA264_17270at 4016.446 kb on + strand, within CA264_17270at 4016.446 kb on + strand, within CA264_17270at 4016.452 kb on + strand, within CA264_17270at 4016.521 kb on + strand, within CA264_17270at 4016.522 kb on - strand, within CA264_17270at 4016.522 kb on - strand, within CA264_17270at 4016.524 kb on - strand, within CA264_17270at 4016.524 kb on - strand, within CA264_17270at 4016.587 kb on + strand, within CA264_17270at 4016.656 kb on - strand, within CA264_17270at 4016.656 kb on - strand, within CA264_17270at 4016.721 kb on + strand, within CA264_17270at 4016.721 kb on + strand, within CA264_17270at 4016.721 kb on + strand, within CA264_17270at 4016.721 kb on + strand, within CA264_17270at 4016.722 kb on - strand, within CA264_17270at 4016.722 kb on - strand, within CA264_17270at 4016.722 kb on - strand, within CA264_17270at 4016.723 kb on + strand, within CA264_17270at 4016.785 kb on + strand, within CA264_17270at 4016.836 kb on + strand, within CA264_17270at 4016.905 kb on + strand, within CA264_17270at 4016.911 kb on + strand, within CA264_17270at 4016.912 kb on - strand, within CA264_17270at 4016.912 kb on - strand, within CA264_17270at 4016.918 kb on + strand, within CA264_17270at 4016.971 kb on + strand, within CA264_17270at 4016.971 kb on + strand, within CA264_17270at 4016.972 kb on - strand, within CA264_17270at 4017.008 kb on - strand, within CA264_17270at 4017.008 kb on - strand, within CA264_17270at 4017.009 kb on + strand, within CA264_17270at 4017.056 kb on - strand, within CA264_17270at 4017.059 kb on - strand, within CA264_17270at 4017.061 kb on + strand, within CA264_17270at 4017.062 kb on - strand, within CA264_17270at 4017.062 kb on - strand, within CA264_17270at 4017.085 kb on - strand, within CA264_17270at 4017.102 kb on + strand, within CA264_17270at 4017.108 kb on - strand, within CA264_17270at 4017.399 kb on + strand, within CA264_17270at 4017.400 kb on - strand, within CA264_17270at 4017.675 kb on - strand, within CA264_17270at 4017.785 kb on + strand, within CA264_17270at 4017.785 kb on + strand, within CA264_17270at 4017.848 kb on + strand, within CA264_17270at 4017.848 kb on + strand, within CA264_17270at 4017.849 kb on - strand, within CA264_17270at 4017.921 kb on + strand, within CA264_17270at 4017.922 kb on - strand, within CA264_17270at 4018.155 kb on - strand, within CA264_17270at 4018.186 kb on - strand, within CA264_17270at 4018.708 kb on - strandat 4018.907 kb on - strandat 4018.907 kb on - strandat 4018.907 kb on - strandat 4018.947 kb on + strandat 4018.947 kb on + strandat 4018.949 kb on + strandat 4018.972 kb on + strandat 4018.973 kb on - strandat 4018.986 kb on - strandat 4018.994 kb on - strandat 4019.006 kb on + strandat 4019.007 kb on - strandat 4019.007 kb on - strandat 4019.007 kb on - strandat 4019.890 kb on + strandat 4019.899 kb on + strandat 4019.900 kb on - strandat 4019.900 kb on - strandat 4019.951 kb on + strandat 4019.951 kb on + strandat 4019.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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4,014,705 - -3.5
4,014,707 - -2.0
4,014,707 - -3.2
4,014,732 - -0.6
4,014,732 - -4.7
4,014,765 - -1.6
4,014,778 + -1.2
4,014,786 - -0.0
4,014,794 - -0.2
4,014,794 - -0.5
4,014,795 + +0.7
4,014,796 - +1.7
4,014,796 - -3.0
4,014,796 - -2.0
4,014,796 - -2.8
4,014,796 - -0.0
4,014,796 - -0.4
4,014,797 + -1.7
4,014,815 + -2.2
4,014,815 + -0.3
4,014,815 + -2.0
4,014,816 - -1.6
4,014,816 - -0.8
4,014,819 + -1.6
4,014,819 + -2.0
4,014,910 + CA264_17265 0.14 -2.1
4,014,967 + CA264_17265 0.21 -1.9
4,014,967 + CA264_17265 0.21 -0.7
4,014,967 + CA264_17265 0.21 -2.8
4,014,968 - CA264_17265 0.22 -2.2
4,014,968 - CA264_17265 0.22 -1.7
4,014,968 - +2.3
4,014,968 - CA264_17265 0.22 -0.4
4,014,968 - CA264_17265 0.22 -3.2
4,014,968 - CA264_17265 0.22 -2.1
4,014,969 + CA264_17265 0.22 -2.9
4,014,969 + CA264_17265 0.22 +0.3
4,014,970 - CA264_17265 0.22 -2.8
4,014,970 - CA264_17265 0.22 -1.8
4,014,985 + CA264_17265 0.24 -1.0
4,014,996 + CA264_17265 0.25 +0.7
4,014,997 - CA264_17265 0.25 -0.6
4,014,997 - CA264_17265 0.25 -0.3
4,015,065 + CA264_17265 0.34 -0.2
4,015,065 + CA264_17265 0.34 -3.5
4,015,065 + CA264_17265 0.34 -2.1
4,015,065 + CA264_17265 0.34 -1.9
4,015,066 - CA264_17265 0.34 -1.9
4,015,125 + CA264_17265 0.42 -1.6
4,015,125 + CA264_17265 0.42 -2.6
4,015,126 - CA264_17265 0.42 -0.9
4,015,198 - CA264_17265 0.52 -0.9
4,015,202 - CA264_17265 0.52 +1.0
4,015,401 + CA264_17265 0.78 -2.4
4,015,403 + CA264_17265 0.79 -0.6
4,015,404 - CA264_17265 0.79 -0.6
4,015,416 + CA264_17265 0.80 -2.0
4,015,462 - CA264_17265 0.86 +0.8
4,015,462 - CA264_17265 0.86 -0.3
4,015,463 + CA264_17265 0.86 -1.4
4,015,463 + CA264_17265 0.86 -0.7
4,015,464 - CA264_17265 0.87 -1.3
4,015,510 + -1.5
4,015,564 - -2.2
4,015,577 + -2.1
4,015,646 - -1.3
4,015,651 + -1.0
4,015,652 - -1.6
4,015,686 - -3.0
4,015,713 + -0.8
4,015,714 - -1.8
4,015,825 + -2.3
4,015,827 + +0.3
4,015,834 + -2.4
4,015,858 + -2.5
4,015,870 + +0.3
4,015,870 + -1.3
4,015,871 - -1.4
4,015,915 + -0.2
4,015,915 + +0.2
4,015,916 - +1.8
4,015,957 - +0.7
4,016,003 + -0.4
4,016,012 - -0.2
4,016,012 - -1.0
4,016,146 - CA264_17270 0.13 -0.6
4,016,149 + CA264_17270 0.13 -1.4
4,016,176 + CA264_17270 0.14 -2.0
4,016,176 + CA264_17270 0.14 -0.9
4,016,176 + CA264_17270 0.14 -2.0
4,016,176 + CA264_17270 0.14 -2.3
4,016,177 - CA264_17270 0.14 -1.4
4,016,177 - CA264_17270 0.14 +1.0
4,016,177 - CA264_17270 0.14 -1.3
4,016,177 - CA264_17270 0.14 -0.8
4,016,177 - CA264_17270 0.14 -0.4
4,016,266 - CA264_17270 0.17 -1.1
4,016,266 - CA264_17270 0.17 -0.2
4,016,266 - CA264_17270 0.17 -1.0
4,016,275 + CA264_17270 0.17 -2.1
4,016,306 + CA264_17270 0.18 +1.0
4,016,392 + CA264_17270 0.21 -0.5
4,016,402 - CA264_17270 0.21 +0.4
4,016,402 - CA264_17270 0.21 -0.3
4,016,402 - CA264_17270 0.21 -0.4
4,016,424 - CA264_17270 0.22 -1.8
4,016,446 + CA264_17270 0.22 -2.8
4,016,446 + CA264_17270 0.22 -0.7
4,016,452 + CA264_17270 0.23 +1.0
4,016,521 + CA264_17270 0.25 -0.6
4,016,522 - CA264_17270 0.25 +0.7
4,016,522 - CA264_17270 0.25 -1.2
4,016,524 - CA264_17270 0.25 -0.8
4,016,524 - CA264_17270 0.25 -1.6
4,016,587 + CA264_17270 0.27 -1.5
4,016,656 - CA264_17270 0.29 -2.1
4,016,656 - CA264_17270 0.29 -0.9
4,016,721 + CA264_17270 0.31 -2.7
4,016,721 + CA264_17270 0.31 -2.9
4,016,721 + CA264_17270 0.31 -1.6
4,016,721 + CA264_17270 0.31 -1.7
4,016,722 - CA264_17270 0.31 -0.6
4,016,722 - CA264_17270 0.31 -1.1
4,016,722 - CA264_17270 0.31 -0.1
4,016,723 + CA264_17270 0.31 +0.1
4,016,785 + CA264_17270 0.33 -0.8
4,016,836 + CA264_17270 0.34 -2.4
4,016,905 + CA264_17270 0.36 -2.0
4,016,911 + CA264_17270 0.36 -1.3
4,016,912 - CA264_17270 0.36 +0.3
4,016,912 - CA264_17270 0.36 -1.2
4,016,918 + CA264_17270 0.37 -3.8
4,016,971 + CA264_17270 0.38 -1.3
4,016,971 + CA264_17270 0.38 -0.9
4,016,972 - CA264_17270 0.38 +0.3
4,017,008 - CA264_17270 0.39 -1.4
4,017,008 - CA264_17270 0.39 +0.3
4,017,009 + CA264_17270 0.39 +0.3
4,017,056 - CA264_17270 0.41 -2.7
4,017,059 - CA264_17270 0.41 +2.0
4,017,061 + CA264_17270 0.41 -0.6
4,017,062 - CA264_17270 0.41 +0.1
4,017,062 - CA264_17270 0.41 -1.2
4,017,085 - CA264_17270 0.42 -1.2
4,017,102 + CA264_17270 0.42 -1.3
4,017,108 - CA264_17270 0.42 -2.5
4,017,399 + CA264_17270 0.51 -0.8
4,017,400 - CA264_17270 0.51 -0.8
4,017,675 - CA264_17270 0.59 -2.4
4,017,785 + CA264_17270 0.63 -0.1
4,017,785 + CA264_17270 0.63 -0.0
4,017,848 + CA264_17270 0.65 -0.9
4,017,848 + CA264_17270 0.65 -0.4
4,017,849 - CA264_17270 0.65 +0.7
4,017,921 + CA264_17270 0.67 -1.9
4,017,922 - CA264_17270 0.67 -0.5
4,018,155 - CA264_17270 0.74 -0.5
4,018,186 - CA264_17270 0.75 -0.4
4,018,708 - +1.3
4,018,907 - -0.3
4,018,907 - -0.9
4,018,907 - +0.7
4,018,947 + -0.0
4,018,947 + +0.7
4,018,949 + -1.9
4,018,972 + -0.1
4,018,973 - +1.1
4,018,986 - +1.2
4,018,994 - +0.8
4,019,006 + -1.2
4,019,007 - +0.8
4,019,007 - +0.8
4,019,007 - +0.3
4,019,890 + +0.5
4,019,899 + -0.6
4,019,900 - -0.6
4,019,900 - -0.7
4,019,951 + +0.4
4,019,951 + +0.4
4,019,952 - -0.0

Or see this region's nucleotide sequence