Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16955

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16950 and CA264_16955 are separated by 9 nucleotidesCA264_16955 and CA264_16960 are separated by 80 nucleotides CA264_16950: CA264_16950 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 3,945,271 to 3,946,797 _16950 CA264_16955: CA264_16955 - hypothetical protein, at 3,946,807 to 3,947,388 _16955 CA264_16960: CA264_16960 - T9SS C-terminal target domain-containing protein, at 3,947,469 to 3,948,971 _16960 Position (kb) 3946 3947 3948Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3946.129 kb on + strand, within CA264_16950at 3946.788 kb on - strandat 3946.799 kb on + strandat 3946.822 kb on + strandat 3946.888 kb on - strand, within CA264_16955at 3946.973 kb on + strand, within CA264_16955at 3947.095 kb on + strand, within CA264_16955at 3947.098 kb on + strand, within CA264_16955at 3947.099 kb on - strand, within CA264_16955at 3947.099 kb on - strand, within CA264_16955at 3947.099 kb on - strand, within CA264_16955at 3947.183 kb on - strand, within CA264_16955at 3947.183 kb on - strand, within CA264_16955at 3947.183 kb on - strand, within CA264_16955at 3947.217 kb on - strand, within CA264_16955at 3947.276 kb on + strand, within CA264_16955at 3947.309 kb on + strand, within CA264_16955at 3947.310 kb on - strand, within CA264_16955at 3947.317 kb on + strand, within CA264_16955at 3947.317 kb on + strand, within CA264_16955at 3947.318 kb on - strand, within CA264_16955at 3947.319 kb on + strand, within CA264_16955at 3947.387 kb on - strandat 3947.387 kb on - strandat 3947.398 kb on + strandat 3947.399 kb on - strandat 3947.402 kb on - strandat 3947.456 kb on - strandat 3947.456 kb on - strandat 3947.456 kb on - strandat 3947.457 kb on + strandat 3947.647 kb on + strand, within CA264_16960at 3947.647 kb on + strand, within CA264_16960at 3947.696 kb on + strand, within CA264_16960at 3947.718 kb on - strand, within CA264_16960at 3947.722 kb on - strand, within CA264_16960at 3947.830 kb on - strand, within CA264_16960at 3947.947 kb on - strand, within CA264_16960at 3947.970 kb on - strand, within CA264_16960at 3948.109 kb on - strand, within CA264_16960at 3948.153 kb on + strand, within CA264_16960at 3948.153 kb on + strand, within CA264_16960at 3948.154 kb on - strand, within CA264_16960at 3948.154 kb on - strand, within CA264_16960at 3948.279 kb on + strand, within CA264_16960at 3948.280 kb on - strand, within CA264_16960

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,946,129 + CA264_16950 0.56 -2.0
3,946,788 - -3.8
3,946,799 + -0.5
3,946,822 + +0.4
3,946,888 - CA264_16955 0.14 -3.4
3,946,973 + CA264_16955 0.29 +0.3
3,947,095 + CA264_16955 0.49 +0.0
3,947,098 + CA264_16955 0.50 -1.7
3,947,099 - CA264_16955 0.50 -0.4
3,947,099 - CA264_16955 0.50 -0.7
3,947,099 - CA264_16955 0.50 -1.5
3,947,183 - CA264_16955 0.65 +0.5
3,947,183 - CA264_16955 0.65 -0.4
3,947,183 - CA264_16955 0.65 -2.0
3,947,217 - CA264_16955 0.70 -2.1
3,947,276 + CA264_16955 0.81 +1.5
3,947,309 + CA264_16955 0.86 +0.5
3,947,310 - CA264_16955 0.86 -0.5
3,947,317 + CA264_16955 0.88 +0.1
3,947,317 + CA264_16955 0.88 +0.5
3,947,318 - CA264_16955 0.88 -0.6
3,947,319 + CA264_16955 0.88 -0.2
3,947,387 - -1.0
3,947,387 - -1.1
3,947,398 + +1.5
3,947,399 - -1.4
3,947,402 - -0.5
3,947,456 - +1.3
3,947,456 - -0.5
3,947,456 - +0.3
3,947,457 + +0.6
3,947,647 + CA264_16960 0.12 +0.0
3,947,647 + CA264_16960 0.12 +1.8
3,947,696 + CA264_16960 0.15 +0.2
3,947,718 - CA264_16960 0.17 -0.5
3,947,722 - CA264_16960 0.17 -0.7
3,947,830 - CA264_16960 0.24 -0.9
3,947,947 - CA264_16960 0.32 -0.0
3,947,970 - CA264_16960 0.33 -2.0
3,948,109 - CA264_16960 0.43 -0.9
3,948,153 + CA264_16960 0.46 +0.3
3,948,153 + CA264_16960 0.46 -1.3
3,948,154 - CA264_16960 0.46 +3.3
3,948,154 - CA264_16960 0.46 +0.8
3,948,279 + CA264_16960 0.54 -0.9
3,948,280 - CA264_16960 0.54 -1.6

Or see this region's nucleotide sequence