Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16015

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16005 and CA264_16010 are separated by 11 nucleotidesCA264_16010 and CA264_16015 are separated by 83 nucleotidesCA264_16015 and CA264_16020 are separated by 174 nucleotides CA264_16005: CA264_16005 - hypothetical protein, at 3,729,209 to 3,730,462 _16005 CA264_16010: CA264_16010 - hypothetical protein, at 3,730,474 to 3,731,310 _16010 CA264_16015: CA264_16015 - DNA-binding protein, at 3,731,394 to 3,731,729 _16015 CA264_16020: CA264_16020 - hypothetical protein, at 3,731,904 to 3,733,217 _16020 Position (kb) 3731 3732Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3730.397 kb on - strandat 3730.481 kb on - strandat 3730.491 kb on + strandat 3730.492 kb on - strandat 3730.492 kb on - strandat 3730.514 kb on + strandat 3730.515 kb on - strandat 3730.516 kb on + strandat 3730.520 kb on + strandat 3730.521 kb on - strandat 3730.525 kb on - strandat 3730.547 kb on + strandat 3730.557 kb on + strandat 3730.557 kb on + strandat 3730.558 kb on - strand, within CA264_16010at 3730.558 kb on - strand, within CA264_16010at 3730.559 kb on + strand, within CA264_16010at 3730.559 kb on + strand, within CA264_16010at 3730.560 kb on - strand, within CA264_16010at 3730.560 kb on - strand, within CA264_16010at 3730.589 kb on - strand, within CA264_16010at 3730.598 kb on - strand, within CA264_16010at 3730.604 kb on + strand, within CA264_16010at 3730.636 kb on + strand, within CA264_16010at 3730.680 kb on - strand, within CA264_16010at 3730.691 kb on + strand, within CA264_16010at 3730.692 kb on - strand, within CA264_16010at 3730.710 kb on - strand, within CA264_16010at 3730.710 kb on - strand, within CA264_16010at 3730.765 kb on - strand, within CA264_16010at 3730.769 kb on + strand, within CA264_16010at 3730.775 kb on + strand, within CA264_16010at 3730.776 kb on - strand, within CA264_16010at 3730.779 kb on + strand, within CA264_16010at 3730.797 kb on + strand, within CA264_16010at 3730.798 kb on - strand, within CA264_16010at 3730.798 kb on - strand, within CA264_16010at 3730.798 kb on - strand, within CA264_16010at 3730.823 kb on + strand, within CA264_16010at 3730.826 kb on + strand, within CA264_16010at 3730.866 kb on + strand, within CA264_16010at 3730.870 kb on + strand, within CA264_16010at 3730.871 kb on - strand, within CA264_16010at 3730.879 kb on + strand, within CA264_16010at 3730.880 kb on - strand, within CA264_16010at 3730.880 kb on - strand, within CA264_16010at 3730.891 kb on + strand, within CA264_16010at 3730.892 kb on - strand, within CA264_16010at 3730.902 kb on + strand, within CA264_16010at 3730.905 kb on - strand, within CA264_16010at 3730.925 kb on + strand, within CA264_16010at 3730.925 kb on + strand, within CA264_16010at 3730.925 kb on + strand, within CA264_16010at 3730.928 kb on + strand, within CA264_16010at 3730.968 kb on - strand, within CA264_16010at 3731.000 kb on + strand, within CA264_16010at 3731.091 kb on + strand, within CA264_16010at 3731.092 kb on - strand, within CA264_16010at 3731.128 kb on - strand, within CA264_16010at 3731.155 kb on + strand, within CA264_16010at 3731.156 kb on - strand, within CA264_16010at 3731.156 kb on - strand, within CA264_16010at 3731.211 kb on + strand, within CA264_16010at 3731.212 kb on - strand, within CA264_16010at 3731.212 kb on - strand, within CA264_16010at 3731.222 kb on + strand, within CA264_16010at 3731.223 kb on - strand, within CA264_16010at 3731.228 kb on + strandat 3731.238 kb on + strandat 3731.286 kb on + strandat 3731.287 kb on - strandat 3731.322 kb on - strandat 3731.339 kb on + strandat 3731.339 kb on + strandat 3731.352 kb on - strandat 3731.355 kb on + strandat 3731.359 kb on + strandat 3731.359 kb on + strandat 3731.360 kb on - strandat 3731.360 kb on - strandat 3731.360 kb on - strandat 3731.449 kb on + strand, within CA264_16015at 3731.450 kb on - strand, within CA264_16015at 3731.450 kb on - strand, within CA264_16015at 3731.474 kb on + strand, within CA264_16015at 3731.546 kb on - strand, within CA264_16015at 3731.560 kb on + strand, within CA264_16015at 3731.562 kb on + strand, within CA264_16015at 3731.562 kb on + strand, within CA264_16015at 3731.563 kb on - strand, within CA264_16015at 3731.563 kb on - strand, within CA264_16015at 3731.563 kb on - strand, within CA264_16015at 3731.587 kb on + strand, within CA264_16015at 3731.617 kb on - strand, within CA264_16015at 3731.625 kb on - strand, within CA264_16015at 3731.680 kb on + strand, within CA264_16015at 3731.704 kb on + strandat 3731.728 kb on - strandat 3731.834 kb on - strandat 3731.851 kb on + strandat 3731.869 kb on - strandat 3731.869 kb on - strandat 3731.872 kb on - strandat 3731.872 kb on - strandat 3731.895 kb on - strandat 3732.003 kb on + strandat 3732.003 kb on + strandat 3732.007 kb on + strandat 3732.054 kb on + strand, within CA264_16020at 3732.054 kb on + strand, within CA264_16020at 3732.056 kb on + strand, within CA264_16020at 3732.057 kb on - strand, within CA264_16020at 3732.101 kb on - strand, within CA264_16020at 3732.101 kb on - strand, within CA264_16020at 3732.139 kb on + strand, within CA264_16020at 3732.153 kb on - strand, within CA264_16020at 3732.158 kb on + strand, within CA264_16020at 3732.172 kb on + strand, within CA264_16020at 3732.186 kb on + strand, within CA264_16020at 3732.187 kb on - strand, within CA264_16020at 3732.198 kb on + strand, within CA264_16020at 3732.198 kb on + strand, within CA264_16020at 3732.199 kb on - strand, within CA264_16020at 3732.245 kb on + strand, within CA264_16020at 3732.245 kb on + strand, within CA264_16020at 3732.285 kb on - strand, within CA264_16020at 3732.330 kb on + strand, within CA264_16020at 3732.372 kb on + strand, within CA264_16020at 3732.373 kb on - strand, within CA264_16020at 3732.392 kb on + strand, within CA264_16020at 3732.402 kb on + strand, within CA264_16020at 3732.404 kb on + strand, within CA264_16020at 3732.408 kb on + strand, within CA264_16020at 3732.409 kb on - strand, within CA264_16020at 3732.409 kb on - strand, within CA264_16020at 3732.409 kb on - strand, within CA264_16020at 3732.412 kb on + strand, within CA264_16020at 3732.412 kb on + strand, within CA264_16020at 3732.445 kb on + strand, within CA264_16020at 3732.452 kb on + strand, within CA264_16020at 3732.453 kb on - strand, within CA264_16020at 3732.454 kb on + strand, within CA264_16020at 3732.454 kb on + strand, within CA264_16020at 3732.455 kb on - strand, within CA264_16020at 3732.588 kb on + strand, within CA264_16020at 3732.588 kb on + strand, within CA264_16020at 3732.588 kb on + strand, within CA264_16020at 3732.588 kb on + strand, within CA264_16020at 3732.589 kb on - strand, within CA264_16020at 3732.590 kb on + strand, within CA264_16020at 3732.590 kb on + strand, within CA264_16020at 3732.590 kb on + strand, within CA264_16020at 3732.715 kb on + strand, within CA264_16020at 3732.721 kb on - strand, within CA264_16020at 3732.721 kb on - strand, within CA264_16020

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,730,397 - +1.1
3,730,481 - +0.7
3,730,491 + -0.0
3,730,492 - +0.2
3,730,492 - +1.0
3,730,514 + +0.4
3,730,515 - +0.9
3,730,516 + -0.1
3,730,520 + -2.0
3,730,521 - +1.7
3,730,525 - +1.4
3,730,547 + -0.6
3,730,557 + +1.0
3,730,557 + -0.8
3,730,558 - CA264_16010 0.10 +1.8
3,730,558 - CA264_16010 0.10 +0.4
3,730,559 + CA264_16010 0.10 +2.0
3,730,559 + CA264_16010 0.10 +0.8
3,730,560 - CA264_16010 0.10 +0.8
3,730,560 - CA264_16010 0.10 +1.0
3,730,589 - CA264_16010 0.14 +0.8
3,730,598 - CA264_16010 0.15 +0.4
3,730,604 + CA264_16010 0.16 -1.2
3,730,636 + CA264_16010 0.19 +0.5
3,730,680 - CA264_16010 0.25 +1.3
3,730,691 + CA264_16010 0.26 +2.2
3,730,692 - CA264_16010 0.26 +0.8
3,730,710 - CA264_16010 0.28 +0.7
3,730,710 - CA264_16010 0.28 +0.4
3,730,765 - CA264_16010 0.35 +1.4
3,730,769 + CA264_16010 0.35 +0.8
3,730,775 + CA264_16010 0.36 +0.7
3,730,776 - CA264_16010 0.36 +0.5
3,730,779 + CA264_16010 0.36 +2.0
3,730,797 + CA264_16010 0.39 -0.1
3,730,798 - CA264_16010 0.39 +0.4
3,730,798 - CA264_16010 0.39 +0.9
3,730,798 - CA264_16010 0.39 -2.1
3,730,823 + CA264_16010 0.42 +0.4
3,730,826 + CA264_16010 0.42 +0.1
3,730,866 + CA264_16010 0.47 +2.3
3,730,870 + CA264_16010 0.47 +0.3
3,730,871 - CA264_16010 0.47 +1.4
3,730,879 + CA264_16010 0.48 +0.1
3,730,880 - CA264_16010 0.49 +1.5
3,730,880 - CA264_16010 0.49 +1.6
3,730,891 + CA264_16010 0.50 +1.8
3,730,892 - CA264_16010 0.50 +0.2
3,730,902 + CA264_16010 0.51 +0.1
3,730,905 - CA264_16010 0.51 +0.2
3,730,925 + CA264_16010 0.54 +0.3
3,730,925 + CA264_16010 0.54 +0.1
3,730,925 + CA264_16010 0.54 +0.3
3,730,928 + CA264_16010 0.54 -0.1
3,730,968 - CA264_16010 0.59 +1.0
3,731,000 + CA264_16010 0.63 +0.6
3,731,091 + CA264_16010 0.74 +0.1
3,731,092 - CA264_16010 0.74 +0.4
3,731,128 - CA264_16010 0.78 +0.8
3,731,155 + CA264_16010 0.81 -1.1
3,731,156 - CA264_16010 0.81 +1.1
3,731,156 - CA264_16010 0.81 +0.7
3,731,211 + CA264_16010 0.88 +0.3
3,731,212 - CA264_16010 0.88 +0.6
3,731,212 - CA264_16010 0.88 -0.6
3,731,222 + CA264_16010 0.89 +2.8
3,731,223 - CA264_16010 0.89 -0.2
3,731,228 + +1.6
3,731,238 + -0.4
3,731,286 + -0.5
3,731,287 - +2.3
3,731,322 - +0.4
3,731,339 + +0.5
3,731,339 + +0.6
3,731,352 - -0.3
3,731,355 + -0.4
3,731,359 + -0.2
3,731,359 + +0.6
3,731,360 - +0.5
3,731,360 - -0.0
3,731,360 - +0.3
3,731,449 + CA264_16015 0.16 -1.2
3,731,450 - CA264_16015 0.17 +1.1
3,731,450 - CA264_16015 0.17 -0.9
3,731,474 + CA264_16015 0.24 -0.2
3,731,546 - CA264_16015 0.45 +0.6
3,731,560 + CA264_16015 0.49 -1.3
3,731,562 + CA264_16015 0.50 +0.8
3,731,562 + CA264_16015 0.50 +0.5
3,731,563 - CA264_16015 0.50 +0.7
3,731,563 - CA264_16015 0.50 +0.3
3,731,563 - CA264_16015 0.50 +1.5
3,731,587 + CA264_16015 0.57 +1.0
3,731,617 - CA264_16015 0.66 +1.4
3,731,625 - CA264_16015 0.69 -1.2
3,731,680 + CA264_16015 0.85 -0.1
3,731,704 + -1.1
3,731,728 - +1.2
3,731,834 - -0.7
3,731,851 + -0.5
3,731,869 - +0.4
3,731,869 - -2.6
3,731,872 - -1.9
3,731,872 - -0.8
3,731,895 - +0.5
3,732,003 + -3.9
3,732,003 + +1.9
3,732,007 + +0.9
3,732,054 + CA264_16020 0.11 -0.2
3,732,054 + CA264_16020 0.11 -1.4
3,732,056 + CA264_16020 0.12 -0.3
3,732,057 - CA264_16020 0.12 +1.0
3,732,101 - CA264_16020 0.15 +1.3
3,732,101 - CA264_16020 0.15 -0.1
3,732,139 + CA264_16020 0.18 -1.2
3,732,153 - CA264_16020 0.19 -0.0
3,732,158 + CA264_16020 0.19 -1.7
3,732,172 + CA264_16020 0.20 -0.2
3,732,186 + CA264_16020 0.21 -0.9
3,732,187 - CA264_16020 0.22 +0.1
3,732,198 + CA264_16020 0.22 +0.4
3,732,198 + CA264_16020 0.22 -1.0
3,732,199 - CA264_16020 0.22 -0.3
3,732,245 + CA264_16020 0.26 -1.5
3,732,245 + CA264_16020 0.26 -0.1
3,732,285 - CA264_16020 0.29 +1.3
3,732,330 + CA264_16020 0.32 +0.1
3,732,372 + CA264_16020 0.36 +0.1
3,732,373 - CA264_16020 0.36 +0.3
3,732,392 + CA264_16020 0.37 -0.8
3,732,402 + CA264_16020 0.38 -1.3
3,732,404 + CA264_16020 0.38 +0.8
3,732,408 + CA264_16020 0.38 -1.3
3,732,409 - CA264_16020 0.38 -0.6
3,732,409 - CA264_16020 0.38 -0.1
3,732,409 - CA264_16020 0.38 +0.6
3,732,412 + CA264_16020 0.39 -1.4
3,732,412 + CA264_16020 0.39 -1.2
3,732,445 + CA264_16020 0.41 -1.9
3,732,452 + CA264_16020 0.42 -1.9
3,732,453 - CA264_16020 0.42 -0.7
3,732,454 + CA264_16020 0.42 -0.5
3,732,454 + CA264_16020 0.42 -2.2
3,732,455 - CA264_16020 0.42 +0.7
3,732,588 + CA264_16020 0.52 -1.2
3,732,588 + CA264_16020 0.52 -1.2
3,732,588 + CA264_16020 0.52 -0.7
3,732,588 + CA264_16020 0.52 -0.2
3,732,589 - CA264_16020 0.52 -0.3
3,732,590 + CA264_16020 0.52 -0.2
3,732,590 + CA264_16020 0.52 -0.9
3,732,590 + CA264_16020 0.52 -0.8
3,732,715 + CA264_16020 0.62 +0.9
3,732,721 - CA264_16020 0.62 -1.0
3,732,721 - CA264_16020 0.62 +0.6

Or see this region's nucleotide sequence