Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14390

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_14385 and CA264_14390 are separated by 64 nucleotidesCA264_14390 and CA264_14395 are separated by 18 nucleotidesCA264_14395 and CA264_14400 are separated by 195 nucleotides CA264_14385: CA264_14385 - LD-carboxypeptidase, at 3,377,019 to 3,377,912 _14385 CA264_14390: CA264_14390 - hypothetical protein, at 3,377,977 to 3,379,647 _14390 CA264_14395: CA264_14395 - endonuclease III, at 3,379,666 to 3,380,373 _14395 CA264_14400: CA264_14400 - MBL fold metallo-hydrolase, at 3,380,569 to 3,381,261 _14400 Position (kb) 3377 3378 3379 3380Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3376.978 kb on - strandat 3376.996 kb on + strandat 3376.996 kb on + strandat 3376.997 kb on - strandat 3377.014 kb on + strandat 3377.015 kb on - strandat 3377.015 kb on - strandat 3377.015 kb on - strandat 3377.231 kb on + strand, within CA264_14385at 3377.231 kb on + strand, within CA264_14385at 3377.231 kb on + strand, within CA264_14385at 3377.344 kb on + strand, within CA264_14385at 3377.344 kb on + strand, within CA264_14385at 3377.344 kb on + strand, within CA264_14385at 3377.389 kb on + strand, within CA264_14385at 3377.390 kb on - strand, within CA264_14385at 3377.482 kb on - strand, within CA264_14385at 3377.631 kb on + strand, within CA264_14385at 3377.645 kb on - strand, within CA264_14385at 3377.770 kb on + strand, within CA264_14385at 3377.770 kb on + strand, within CA264_14385at 3377.771 kb on - strand, within CA264_14385at 3377.836 kb on + strandat 3377.895 kb on - strandat 3377.911 kb on - strandat 3377.980 kb on + strandat 3377.980 kb on + strandat 3377.980 kb on + strandat 3377.980 kb on + strandat 3377.980 kb on + strandat 3377.980 kb on + strandat 3377.981 kb on - strandat 3378.002 kb on + strandat 3378.125 kb on - strandat 3378.157 kb on - strand, within CA264_14390at 3378.223 kb on + strand, within CA264_14390at 3378.240 kb on + strand, within CA264_14390at 3378.240 kb on + strand, within CA264_14390at 3378.244 kb on + strand, within CA264_14390at 3378.286 kb on + strand, within CA264_14390at 3378.289 kb on + strand, within CA264_14390at 3378.291 kb on + strand, within CA264_14390at 3378.291 kb on + strand, within CA264_14390at 3378.424 kb on + strand, within CA264_14390at 3378.427 kb on + strand, within CA264_14390at 3378.521 kb on + strand, within CA264_14390at 3378.584 kb on + strand, within CA264_14390at 3378.612 kb on + strand, within CA264_14390at 3378.613 kb on - strand, within CA264_14390at 3378.617 kb on - strand, within CA264_14390at 3378.619 kb on + strand, within CA264_14390at 3378.619 kb on + strand, within CA264_14390at 3378.624 kb on + strand, within CA264_14390at 3378.689 kb on + strand, within CA264_14390at 3378.689 kb on + strand, within CA264_14390at 3378.730 kb on - strand, within CA264_14390at 3378.797 kb on + strand, within CA264_14390at 3378.798 kb on - strand, within CA264_14390at 3378.798 kb on - strand, within CA264_14390at 3378.802 kb on + strand, within CA264_14390at 3378.802 kb on + strand, within CA264_14390at 3378.846 kb on - strand, within CA264_14390at 3378.873 kb on + strand, within CA264_14390at 3378.875 kb on + strand, within CA264_14390at 3378.943 kb on - strand, within CA264_14390at 3379.213 kb on - strand, within CA264_14390at 3379.588 kb on + strandat 3379.682 kb on - strandat 3379.709 kb on + strandat 3379.754 kb on + strand, within CA264_14395at 3379.806 kb on - strand, within CA264_14395at 3379.900 kb on + strand, within CA264_14395at 3380.092 kb on + strand, within CA264_14395at 3380.118 kb on - strand, within CA264_14395at 3380.204 kb on + strand, within CA264_14395at 3380.205 kb on - strand, within CA264_14395at 3380.227 kb on - strand, within CA264_14395at 3380.373 kb on + strandat 3380.373 kb on + strandat 3380.401 kb on + strandat 3380.477 kb on + strandat 3380.505 kb on + strandat 3380.517 kb on - strandat 3380.517 kb on - strandat 3380.519 kb on - strandat 3380.527 kb on - strandat 3380.545 kb on + strandat 3380.577 kb on + strandat 3380.585 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
remove
3,376,978 - -0.7
3,376,996 + -0.0
3,376,996 + +0.1
3,376,997 - -0.8
3,377,014 + +0.6
3,377,015 - -1.7
3,377,015 - -0.7
3,377,015 - -1.5
3,377,231 + CA264_14385 0.24 +0.4
3,377,231 + CA264_14385 0.24 -2.2
3,377,231 + CA264_14385 0.24 -2.9
3,377,344 + CA264_14385 0.36 -1.3
3,377,344 + CA264_14385 0.36 -1.6
3,377,344 + CA264_14385 0.36 -1.2
3,377,389 + CA264_14385 0.41 -1.6
3,377,390 - CA264_14385 0.41 -1.3
3,377,482 - CA264_14385 0.52 -2.9
3,377,631 + CA264_14385 0.68 -4.2
3,377,645 - CA264_14385 0.70 -1.1
3,377,770 + CA264_14385 0.84 -1.5
3,377,770 + CA264_14385 0.84 -2.3
3,377,771 - CA264_14385 0.84 -2.0
3,377,836 + -2.6
3,377,895 - -0.5
3,377,911 - -0.4
3,377,980 + -0.0
3,377,980 + -0.2
3,377,980 + +0.3
3,377,980 + +2.2
3,377,980 + -0.7
3,377,980 + +0.3
3,377,981 - -0.5
3,378,002 + -0.2
3,378,125 - -0.6
3,378,157 - CA264_14390 0.11 +0.2
3,378,223 + CA264_14390 0.15 -0.2
3,378,240 + CA264_14390 0.16 -0.1
3,378,240 + CA264_14390 0.16 -0.8
3,378,244 + CA264_14390 0.16 +0.3
3,378,286 + CA264_14390 0.18 +0.4
3,378,289 + CA264_14390 0.19 +0.4
3,378,291 + CA264_14390 0.19 -0.5
3,378,291 + CA264_14390 0.19 -0.3
3,378,424 + CA264_14390 0.27 -1.1
3,378,427 + CA264_14390 0.27 -1.5
3,378,521 + CA264_14390 0.33 -0.7
3,378,584 + CA264_14390 0.36 +0.3
3,378,612 + CA264_14390 0.38 -0.3
3,378,613 - CA264_14390 0.38 +0.3
3,378,617 - CA264_14390 0.38 +0.3
3,378,619 + CA264_14390 0.38 -1.0
3,378,619 + CA264_14390 0.38 -0.6
3,378,624 + CA264_14390 0.39 -0.9
3,378,689 + CA264_14390 0.43 -0.1
3,378,689 + CA264_14390 0.43 -0.0
3,378,730 - CA264_14390 0.45 -0.7
3,378,797 + CA264_14390 0.49 -0.9
3,378,798 - CA264_14390 0.49 +1.7
3,378,798 - CA264_14390 0.49 +1.0
3,378,802 + CA264_14390 0.49 +2.0
3,378,802 + CA264_14390 0.49 +0.8
3,378,846 - CA264_14390 0.52 +0.3
3,378,873 + CA264_14390 0.54 +0.5
3,378,875 + CA264_14390 0.54 +1.4
3,378,943 - CA264_14390 0.58 -0.6
3,379,213 - CA264_14390 0.74 +0.4
3,379,588 + -0.6
3,379,682 - -0.3
3,379,709 + -0.5
3,379,754 + CA264_14395 0.12 +0.0
3,379,806 - CA264_14395 0.20 -0.0
3,379,900 + CA264_14395 0.33 +0.4
3,380,092 + CA264_14395 0.60 -1.1
3,380,118 - CA264_14395 0.64 -1.3
3,380,204 + CA264_14395 0.76 -0.4
3,380,205 - CA264_14395 0.76 -0.1
3,380,227 - CA264_14395 0.79 -0.3
3,380,373 + +1.0
3,380,373 + -0.2
3,380,401 + +0.4
3,380,477 + +0.0
3,380,505 + -0.4
3,380,517 - -1.4
3,380,517 - +1.2
3,380,519 - -0.0
3,380,527 - +0.5
3,380,545 + +0.7
3,380,577 + +0.7
3,380,585 + +1.6

Or see this region's nucleotide sequence