Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14365

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14355 and CA264_14360 are separated by 32 nucleotidesCA264_14360 and CA264_14365 are separated by 43 nucleotidesCA264_14365 and CA264_14370 are separated by 104 nucleotidesCA264_14370 and CA264_14375 are separated by 372 nucleotides CA264_14355: CA264_14355 - hypothetical protein, at 3,371,679 to 3,372,134 _14355 CA264_14360: CA264_14360 - gamma carbonic anhydrase family protein, at 3,372,167 to 3,372,691 _14360 CA264_14365: CA264_14365 - radical SAM protein, at 3,372,735 to 3,373,733 _14365 CA264_14370: CA264_14370 - hypothetical protein, at 3,373,838 to 3,374,257 _14370 CA264_14375: CA264_14375 - hypothetical protein, at 3,374,630 to 3,375,238 _14375 Position (kb) 3372 3373 3374Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3371.769 kb on + strand, within CA264_14355at 3371.809 kb on - strand, within CA264_14355at 3371.813 kb on - strand, within CA264_14355at 3371.813 kb on - strand, within CA264_14355at 3371.849 kb on + strand, within CA264_14355at 3371.849 kb on + strand, within CA264_14355at 3371.850 kb on - strand, within CA264_14355at 3371.954 kb on + strand, within CA264_14355at 3371.954 kb on + strand, within CA264_14355at 3371.956 kb on + strand, within CA264_14355at 3371.957 kb on - strand, within CA264_14355at 3372.168 kb on + strandat 3372.169 kb on - strandat 3372.169 kb on - strandat 3372.202 kb on - strandat 3372.210 kb on + strandat 3372.211 kb on - strandat 3372.263 kb on + strand, within CA264_14360at 3372.346 kb on + strand, within CA264_14360at 3372.346 kb on + strand, within CA264_14360at 3372.347 kb on - strand, within CA264_14360at 3372.517 kb on + strand, within CA264_14360at 3372.518 kb on - strand, within CA264_14360at 3372.518 kb on - strand, within CA264_14360at 3372.680 kb on + strandat 3372.681 kb on - strandat 3372.683 kb on - strandat 3372.707 kb on - strandat 3372.725 kb on - strandat 3372.725 kb on - strandat 3372.729 kb on + strandat 3372.729 kb on + strandat 3372.736 kb on + strandat 3372.792 kb on - strandat 3372.827 kb on - strandat 3372.841 kb on - strandat 3372.862 kb on + strand, within CA264_14365at 3372.876 kb on - strand, within CA264_14365at 3372.876 kb on - strand, within CA264_14365at 3372.941 kb on - strand, within CA264_14365at 3372.950 kb on - strand, within CA264_14365at 3372.970 kb on + strand, within CA264_14365at 3373.025 kb on + strand, within CA264_14365at 3373.115 kb on - strandat 3373.116 kb on + strand, within CA264_14365at 3373.117 kb on - strand, within CA264_14365at 3373.186 kb on - strand, within CA264_14365at 3373.212 kb on + strand, within CA264_14365at 3373.563 kb on - strand, within CA264_14365at 3373.633 kb on + strand, within CA264_14365at 3373.653 kb on + strandat 3373.653 kb on + strandat 3373.654 kb on - strandat 3373.688 kb on - strandat 3373.688 kb on - strandat 3373.688 kb on - strandat 3373.711 kb on - strandat 3373.759 kb on + strandat 3373.767 kb on - strandat 3373.837 kb on + strandat 3373.889 kb on + strand, within CA264_14370at 3373.980 kb on - strand, within CA264_14370at 3373.991 kb on - strand, within CA264_14370at 3373.994 kb on + strand, within CA264_14370at 3373.994 kb on + strand, within CA264_14370at 3374.043 kb on + strand, within CA264_14370at 3374.069 kb on + strand, within CA264_14370at 3374.069 kb on + strand, within CA264_14370at 3374.069 kb on + strand, within CA264_14370at 3374.133 kb on + strand, within CA264_14370at 3374.134 kb on - strand, within CA264_14370at 3374.134 kb on - strand, within CA264_14370at 3374.197 kb on - strand, within CA264_14370at 3374.268 kb on - strandat 3374.346 kb on - strandat 3374.368 kb on - strandat 3374.368 kb on - strandat 3374.430 kb on - strandat 3374.485 kb on - strandat 3374.488 kb on + strandat 3374.489 kb on - strandat 3374.512 kb on + strandat 3374.512 kb on + strandat 3374.516 kb on + strandat 3374.517 kb on - strandat 3374.517 kb on - strandat 3374.517 kb on - strandat 3374.518 kb on + strandat 3374.521 kb on + strandat 3374.525 kb on + strandat 3374.525 kb on + strandat 3374.574 kb on - strandat 3374.617 kb on + strandat 3374.617 kb on + strandat 3374.623 kb on + strandat 3374.623 kb on + strandat 3374.624 kb on - strandat 3374.710 kb on - strand, within CA264_14375

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,371,769 + CA264_14355 0.20 -1.3
3,371,809 - CA264_14355 0.29 -0.9
3,371,813 - CA264_14355 0.29 -0.1
3,371,813 - CA264_14355 0.29 -0.7
3,371,849 + CA264_14355 0.37 +0.2
3,371,849 + CA264_14355 0.37 -0.1
3,371,850 - CA264_14355 0.38 -0.8
3,371,954 + CA264_14355 0.60 +0.7
3,371,954 + CA264_14355 0.60 +0.7
3,371,956 + CA264_14355 0.61 +1.6
3,371,957 - CA264_14355 0.61 -0.2
3,372,168 + +0.4
3,372,169 - +0.4
3,372,169 - -1.5
3,372,202 - +0.7
3,372,210 + -0.6
3,372,211 - +0.9
3,372,263 + CA264_14360 0.18 -0.5
3,372,346 + CA264_14360 0.34 +0.7
3,372,346 + CA264_14360 0.34 -0.1
3,372,347 - CA264_14360 0.34 -1.4
3,372,517 + CA264_14360 0.67 -0.4
3,372,518 - CA264_14360 0.67 +0.7
3,372,518 - CA264_14360 0.67 -2.1
3,372,680 + +0.4
3,372,681 - -0.2
3,372,683 - -0.2
3,372,707 - -0.5
3,372,725 - +1.5
3,372,725 - -0.5
3,372,729 + -0.1
3,372,729 + +0.4
3,372,736 + +0.1
3,372,792 - -0.5
3,372,827 - +0.0
3,372,841 - +3.0
3,372,862 + CA264_14365 0.13 -0.8
3,372,876 - CA264_14365 0.14 -0.0
3,372,876 - CA264_14365 0.14 -0.2
3,372,941 - CA264_14365 0.21 -0.8
3,372,950 - CA264_14365 0.22 +0.3
3,372,970 + CA264_14365 0.24 -1.2
3,373,025 + CA264_14365 0.29 -0.0
3,373,115 - +0.7
3,373,116 + CA264_14365 0.38 -0.0
3,373,117 - CA264_14365 0.38 -0.9
3,373,186 - CA264_14365 0.45 +0.4
3,373,212 + CA264_14365 0.48 -1.4
3,373,563 - CA264_14365 0.83 +0.0
3,373,633 + CA264_14365 0.90 -1.2
3,373,653 + -1.3
3,373,653 + -0.2
3,373,654 - -0.9
3,373,688 - +0.0
3,373,688 - +0.3
3,373,688 - -1.3
3,373,711 - -1.3
3,373,759 + -1.2
3,373,767 - +0.5
3,373,837 + -1.5
3,373,889 + CA264_14370 0.12 +0.2
3,373,980 - CA264_14370 0.34 -2.2
3,373,991 - CA264_14370 0.36 -1.0
3,373,994 + CA264_14370 0.37 -1.8
3,373,994 + CA264_14370 0.37 -2.8
3,374,043 + CA264_14370 0.49 -1.7
3,374,069 + CA264_14370 0.55 -1.2
3,374,069 + CA264_14370 0.55 -2.4
3,374,069 + CA264_14370 0.55 -2.4
3,374,133 + CA264_14370 0.70 -3.1
3,374,134 - CA264_14370 0.70 -0.3
3,374,134 - CA264_14370 0.70 -0.7
3,374,197 - CA264_14370 0.85 -1.2
3,374,268 - -1.8
3,374,346 - -0.4
3,374,368 - -2.9
3,374,368 - -1.3
3,374,430 - +0.2
3,374,485 - -0.7
3,374,488 + -1.4
3,374,489 - +0.3
3,374,512 + -1.5
3,374,512 + -2.8
3,374,516 + -0.1
3,374,517 - -0.3
3,374,517 - +0.5
3,374,517 - +0.6
3,374,518 + -1.2
3,374,521 + +1.0
3,374,525 + -1.7
3,374,525 + -2.1
3,374,574 - -1.3
3,374,617 + +0.7
3,374,617 + -0.7
3,374,623 + -1.6
3,374,623 + -2.2
3,374,624 - -0.7
3,374,710 - CA264_14375 0.13 -0.7

Or see this region's nucleotide sequence