Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13985

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13980 and CA264_13985 are separated by 19 nucleotidesCA264_13985 and CA264_13990 are separated by 97 nucleotides CA264_13980: CA264_13980 - alpha-glucuronidase, at 3,271,746 to 3,273,911 _13980 CA264_13985: CA264_13985 - 3-oxoacyl-ACP reductase, at 3,273,931 to 3,274,689 _13985 CA264_13990: CA264_13990 - 1,4-beta-xylanase, at 3,274,787 to 3,275,965 _13990 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3273.016 kb on - strand, within CA264_13980at 3273.016 kb on - strand, within CA264_13980at 3273.031 kb on - strand, within CA264_13980at 3273.057 kb on + strand, within CA264_13980at 3273.057 kb on + strand, within CA264_13980at 3273.058 kb on - strand, within CA264_13980at 3273.128 kb on + strand, within CA264_13980at 3273.130 kb on + strand, within CA264_13980at 3273.130 kb on + strand, within CA264_13980at 3273.130 kb on + strand, within CA264_13980at 3273.131 kb on - strand, within CA264_13980at 3273.345 kb on + strand, within CA264_13980at 3273.346 kb on - strand, within CA264_13980at 3273.447 kb on + strand, within CA264_13980at 3273.519 kb on + strand, within CA264_13980at 3273.614 kb on - strand, within CA264_13980at 3273.804 kb on + strandat 3273.822 kb on - strandat 3273.860 kb on + strandat 3273.908 kb on - strandat 3273.909 kb on + strandat 3273.915 kb on + strandat 3273.916 kb on - strandat 3273.916 kb on - strandat 3273.916 kb on - strandat 3273.916 kb on - strandat 3273.926 kb on + strandat 3273.926 kb on + strandat 3273.926 kb on + strandat 3273.927 kb on - strandat 3273.940 kb on - strandat 3273.946 kb on - strandat 3274.105 kb on + strand, within CA264_13985at 3274.209 kb on + strand, within CA264_13985at 3274.210 kb on - strand, within CA264_13985at 3274.228 kb on - strand, within CA264_13985at 3274.263 kb on - strand, within CA264_13985at 3274.266 kb on + strand, within CA264_13985at 3274.267 kb on - strand, within CA264_13985at 3274.267 kb on - strand, within CA264_13985at 3274.370 kb on - strand, within CA264_13985at 3274.577 kb on + strand, within CA264_13985at 3274.609 kb on + strand, within CA264_13985at 3274.610 kb on - strand, within CA264_13985at 3274.610 kb on - strand, within CA264_13985at 3274.612 kb on + strand, within CA264_13985at 3274.613 kb on - strand, within CA264_13985at 3275.006 kb on - strand, within CA264_13990at 3275.081 kb on + strand, within CA264_13990at 3275.082 kb on - strand, within CA264_13990at 3275.150 kb on - strand, within CA264_13990at 3275.398 kb on + strand, within CA264_13990at 3275.399 kb on - strand, within CA264_13990at 3275.426 kb on + strand, within CA264_13990at 3275.427 kb on - strand, within CA264_13990at 3275.435 kb on + strand, within CA264_13990at 3275.437 kb on + strand, within CA264_13990at 3275.437 kb on + strand, within CA264_13990at 3275.608 kb on - strand, within CA264_13990

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,273,016 - CA264_13980 0.59 +0.0
3,273,016 - CA264_13980 0.59 -0.1
3,273,031 - CA264_13980 0.59 -2.2
3,273,057 + CA264_13980 0.61 -1.3
3,273,057 + CA264_13980 0.61 -1.8
3,273,058 - CA264_13980 0.61 -1.6
3,273,128 + CA264_13980 0.64 -2.4
3,273,130 + CA264_13980 0.64 +0.4
3,273,130 + CA264_13980 0.64 -1.2
3,273,130 + CA264_13980 0.64 -2.4
3,273,131 - CA264_13980 0.64 +0.6
3,273,345 + CA264_13980 0.74 -2.9
3,273,346 - CA264_13980 0.74 +0.0
3,273,447 + CA264_13980 0.79 +0.1
3,273,519 + CA264_13980 0.82 -1.2
3,273,614 - CA264_13980 0.86 -1.1
3,273,804 + -1.4
3,273,822 - -1.8
3,273,860 + -3.5
3,273,908 - -2.3
3,273,909 + +0.1
3,273,915 + +0.6
3,273,916 - -1.3
3,273,916 - -1.9
3,273,916 - -2.1
3,273,916 - -1.3
3,273,926 + -3.1
3,273,926 + -1.2
3,273,926 + -2.0
3,273,927 - -4.0
3,273,940 - -1.0
3,273,946 - -0.9
3,274,105 + CA264_13985 0.23 -0.5
3,274,209 + CA264_13985 0.37 +1.3
3,274,210 - CA264_13985 0.37 +1.2
3,274,228 - CA264_13985 0.39 -1.5
3,274,263 - CA264_13985 0.44 -2.0
3,274,266 + CA264_13985 0.44 -1.0
3,274,267 - CA264_13985 0.44 -0.1
3,274,267 - CA264_13985 0.44 -0.6
3,274,370 - CA264_13985 0.58 -1.3
3,274,577 + CA264_13985 0.85 -5.2
3,274,609 + CA264_13985 0.89 -0.7
3,274,610 - CA264_13985 0.89 -1.0
3,274,610 - CA264_13985 0.89 -1.4
3,274,612 + CA264_13985 0.90 -2.0
3,274,613 - CA264_13985 0.90 -1.2
3,275,006 - CA264_13990 0.19 +0.6
3,275,081 + CA264_13990 0.25 -3.7
3,275,082 - CA264_13990 0.25 -1.2
3,275,150 - CA264_13990 0.31 -1.2
3,275,398 + CA264_13990 0.52 -3.5
3,275,399 - CA264_13990 0.52 -2.1
3,275,426 + CA264_13990 0.54 -1.0
3,275,427 - CA264_13990 0.54 -1.9
3,275,435 + CA264_13990 0.55 -4.2
3,275,437 + CA264_13990 0.55 -2.2
3,275,437 + CA264_13990 0.55 -3.3
3,275,608 - CA264_13990 0.70 -0.1

Or see this region's nucleotide sequence