Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13815

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13810 and CA264_13815 are separated by 65 nucleotidesCA264_13815 and CA264_13820 are separated by 145 nucleotidesCA264_13820 and CA264_13825 are separated by 90 nucleotides CA264_13810: CA264_13810 - hypothetical protein, at 3,228,310 to 3,229,764 _13810 CA264_13815: CA264_13815 - hypothetical protein, at 3,229,830 to 3,231,680 _13815 CA264_13820: CA264_13820 - protease, at 3,231,826 to 3,232,440 _13820 CA264_13825: CA264_13825 - hypothetical protein, at 3,232,531 to 3,232,764 _13825 Position (kb) 3229 3230 3231 3232Strain fitness (log2 ratio) -2 -1 0 1 2at 3228.904 kb on - strand, within CA264_13810at 3228.924 kb on - strand, within CA264_13810at 3228.953 kb on + strand, within CA264_13810at 3228.954 kb on - strand, within CA264_13810at 3229.220 kb on + strand, within CA264_13810at 3229.220 kb on + strand, within CA264_13810at 3229.220 kb on + strand, within CA264_13810at 3229.220 kb on + strand, within CA264_13810at 3229.221 kb on - strand, within CA264_13810at 3229.288 kb on - strand, within CA264_13810at 3229.414 kb on + strand, within CA264_13810at 3229.474 kb on + strand, within CA264_13810at 3229.474 kb on + strand, within CA264_13810at 3229.557 kb on + strand, within CA264_13810at 3229.589 kb on + strand, within CA264_13810at 3229.699 kb on - strandat 3229.699 kb on - strandat 3229.719 kb on - strandat 3229.763 kb on - strandat 3229.808 kb on + strandat 3229.814 kb on + strandat 3230.265 kb on + strand, within CA264_13815at 3230.400 kb on - strand, within CA264_13815at 3230.408 kb on - strand, within CA264_13815at 3230.522 kb on - strand, within CA264_13815at 3230.522 kb on - strand, within CA264_13815at 3230.623 kb on - strand, within CA264_13815at 3230.623 kb on - strand, within CA264_13815at 3230.713 kb on - strand, within CA264_13815at 3230.871 kb on + strand, within CA264_13815at 3230.872 kb on - strand, within CA264_13815at 3230.992 kb on + strand, within CA264_13815at 3231.023 kb on + strand, within CA264_13815at 3231.029 kb on + strand, within CA264_13815at 3231.030 kb on - strand, within CA264_13815at 3231.034 kb on - strand, within CA264_13815at 3231.168 kb on - strand, within CA264_13815at 3231.221 kb on - strand, within CA264_13815at 3231.221 kb on - strand, within CA264_13815at 3231.250 kb on + strand, within CA264_13815at 3231.391 kb on + strand, within CA264_13815at 3231.430 kb on + strand, within CA264_13815at 3231.430 kb on + strand, within CA264_13815at 3231.691 kb on - strandat 3231.819 kb on - strandat 3231.819 kb on - strandat 3231.878 kb on - strandat 3231.919 kb on + strand, within CA264_13820at 3231.920 kb on - strand, within CA264_13820at 3231.965 kb on + strand, within CA264_13820at 3231.966 kb on - strand, within CA264_13820at 3231.966 kb on - strand, within CA264_13820at 3232.003 kb on + strand, within CA264_13820at 3232.035 kb on + strand, within CA264_13820at 3232.035 kb on + strand, within CA264_13820at 3232.039 kb on + strand, within CA264_13820at 3232.109 kb on - strand, within CA264_13820at 3232.109 kb on - strand, within CA264_13820at 3232.133 kb on + strand, within CA264_13820at 3232.161 kb on + strand, within CA264_13820at 3232.161 kb on + strand, within CA264_13820at 3232.161 kb on + strand, within CA264_13820at 3232.161 kb on + strand, within CA264_13820at 3232.162 kb on - strand, within CA264_13820at 3232.244 kb on - strand, within CA264_13820at 3232.289 kb on + strand, within CA264_13820at 3232.332 kb on + strand, within CA264_13820at 3232.333 kb on - strand, within CA264_13820at 3232.512 kb on + strandat 3232.518 kb on - strandat 3232.518 kb on - strandat 3232.639 kb on + strand, within CA264_13825

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,228,904 - CA264_13810 0.41 -0.8
3,228,924 - CA264_13810 0.42 -0.1
3,228,953 + CA264_13810 0.44 +0.2
3,228,954 - CA264_13810 0.44 +0.3
3,229,220 + CA264_13810 0.63 -0.0
3,229,220 + CA264_13810 0.63 -0.8
3,229,220 + CA264_13810 0.63 +0.6
3,229,220 + CA264_13810 0.63 -1.2
3,229,221 - CA264_13810 0.63 -0.3
3,229,288 - CA264_13810 0.67 -0.3
3,229,414 + CA264_13810 0.76 +0.6
3,229,474 + CA264_13810 0.80 +2.0
3,229,474 + CA264_13810 0.80 -0.1
3,229,557 + CA264_13810 0.86 -1.3
3,229,589 + CA264_13810 0.88 -0.4
3,229,699 - +0.0
3,229,699 - -1.1
3,229,719 - -0.6
3,229,763 - -0.2
3,229,808 + -0.6
3,229,814 + -1.0
3,230,265 + CA264_13815 0.24 -0.8
3,230,400 - CA264_13815 0.31 -0.8
3,230,408 - CA264_13815 0.31 -0.7
3,230,522 - CA264_13815 0.37 +0.4
3,230,522 - CA264_13815 0.37 -0.1
3,230,623 - CA264_13815 0.43 -0.5
3,230,623 - CA264_13815 0.43 -0.5
3,230,713 - CA264_13815 0.48 -0.9
3,230,871 + CA264_13815 0.56 -1.3
3,230,872 - CA264_13815 0.56 -1.0
3,230,992 + CA264_13815 0.63 -1.2
3,231,023 + CA264_13815 0.64 +1.4
3,231,029 + CA264_13815 0.65 -0.8
3,231,030 - CA264_13815 0.65 -1.0
3,231,034 - CA264_13815 0.65 +0.4
3,231,168 - CA264_13815 0.72 +0.7
3,231,221 - CA264_13815 0.75 -1.0
3,231,221 - CA264_13815 0.75 -1.1
3,231,250 + CA264_13815 0.77 +0.1
3,231,391 + CA264_13815 0.84 -1.1
3,231,430 + CA264_13815 0.86 +0.7
3,231,430 + CA264_13815 0.86 +0.4
3,231,691 - +0.2
3,231,819 - +0.8
3,231,819 - +0.7
3,231,878 - -0.1
3,231,919 + CA264_13820 0.15 +0.2
3,231,920 - CA264_13820 0.15 +0.1
3,231,965 + CA264_13820 0.23 +1.4
3,231,966 - CA264_13820 0.23 -0.3
3,231,966 - CA264_13820 0.23 +1.2
3,232,003 + CA264_13820 0.29 -0.8
3,232,035 + CA264_13820 0.34 -0.9
3,232,035 + CA264_13820 0.34 +0.1
3,232,039 + CA264_13820 0.35 -0.4
3,232,109 - CA264_13820 0.46 +0.4
3,232,109 - CA264_13820 0.46 +0.4
3,232,133 + CA264_13820 0.50 -0.7
3,232,161 + CA264_13820 0.54 -0.1
3,232,161 + CA264_13820 0.54 -2.2
3,232,161 + CA264_13820 0.54 -1.3
3,232,161 + CA264_13820 0.54 -1.1
3,232,162 - CA264_13820 0.55 +2.0
3,232,244 - CA264_13820 0.68 +0.8
3,232,289 + CA264_13820 0.75 -1.6
3,232,332 + CA264_13820 0.82 -1.8
3,232,333 - CA264_13820 0.82 +0.2
3,232,512 + +2.0
3,232,518 - -0.7
3,232,518 - -0.5
3,232,639 + CA264_13825 0.46 -0.3

Or see this region's nucleotide sequence