Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13630

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13620 and CA264_13625 are separated by 2 nucleotidesCA264_13625 and CA264_13630 are separated by 98 nucleotidesCA264_13630 and CA264_13635 are separated by 152 nucleotides CA264_13620: CA264_13620 - RNA polymerase subunit sigma, at 3,185,038 to 3,185,655 _13620 CA264_13625: CA264_13625 - N-acetyltransferase, at 3,185,658 to 3,186,173 _13625 CA264_13630: CA264_13630 - glyoxalase/bleomycin resistance/dioxygenase family protein, at 3,186,272 to 3,186,670 _13630 CA264_13635: CA264_13635 - hypothetical protein, at 3,186,823 to 3,188,805 _13635 Position (kb) 3186 3187Strain fitness (log2 ratio) -2 -1 0 1 2at 3185.299 kb on - strand, within CA264_13620at 3185.308 kb on + strand, within CA264_13620at 3185.321 kb on - strand, within CA264_13620at 3185.376 kb on + strand, within CA264_13620at 3185.376 kb on + strand, within CA264_13620at 3185.376 kb on + strand, within CA264_13620at 3185.377 kb on - strand, within CA264_13620at 3185.498 kb on + strand, within CA264_13620at 3185.498 kb on + strand, within CA264_13620at 3185.656 kb on - strandat 3185.656 kb on - strandat 3185.660 kb on - strandat 3185.746 kb on - strand, within CA264_13625at 3185.778 kb on + strand, within CA264_13625at 3185.780 kb on + strand, within CA264_13625at 3185.780 kb on + strand, within CA264_13625at 3185.905 kb on + strand, within CA264_13625at 3185.905 kb on + strand, within CA264_13625at 3186.097 kb on + strand, within CA264_13625at 3186.098 kb on - strand, within CA264_13625at 3186.098 kb on - strand, within CA264_13625at 3186.101 kb on + strand, within CA264_13625at 3186.141 kb on + strandat 3186.194 kb on - strandat 3186.195 kb on + strandat 3186.196 kb on - strandat 3186.210 kb on + strandat 3186.212 kb on + strandat 3186.212 kb on + strandat 3186.212 kb on + strandat 3186.212 kb on + strandat 3186.382 kb on + strand, within CA264_13630at 3186.382 kb on + strand, within CA264_13630at 3186.383 kb on - strand, within CA264_13630at 3186.383 kb on - strand, within CA264_13630at 3186.388 kb on - strand, within CA264_13630at 3186.578 kb on + strand, within CA264_13630at 3186.578 kb on + strand, within CA264_13630at 3186.612 kb on + strand, within CA264_13630at 3186.613 kb on - strand, within CA264_13630at 3186.867 kb on + strandat 3186.890 kb on - strandat 3186.890 kb on - strandat 3186.950 kb on + strandat 3186.951 kb on - strandat 3186.970 kb on + strandat 3186.975 kb on + strandat 3186.990 kb on - strandat 3187.031 kb on + strand, within CA264_13635at 3187.031 kb on + strand, within CA264_13635at 3187.032 kb on - strand, within CA264_13635at 3187.036 kb on + strand, within CA264_13635at 3187.044 kb on - strand, within CA264_13635at 3187.060 kb on + strand, within CA264_13635at 3187.139 kb on + strand, within CA264_13635at 3187.149 kb on + strand, within CA264_13635at 3187.149 kb on + strand, within CA264_13635at 3187.272 kb on + strand, within CA264_13635at 3187.273 kb on - strand, within CA264_13635at 3187.298 kb on - strand, within CA264_13635at 3187.383 kb on - strand, within CA264_13635at 3187.429 kb on + strand, within CA264_13635at 3187.618 kb on + strand, within CA264_13635

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,185,299 - CA264_13620 0.42 +1.6
3,185,308 + CA264_13620 0.44 +0.5
3,185,321 - CA264_13620 0.46 -2.0
3,185,376 + CA264_13620 0.55 -0.4
3,185,376 + CA264_13620 0.55 +0.4
3,185,376 + CA264_13620 0.55 +0.5
3,185,377 - CA264_13620 0.55 +0.2
3,185,498 + CA264_13620 0.74 +0.5
3,185,498 + CA264_13620 0.74 +1.7
3,185,656 - -0.7
3,185,656 - +0.2
3,185,660 - -0.3
3,185,746 - CA264_13625 0.17 +0.2
3,185,778 + CA264_13625 0.23 +0.3
3,185,780 + CA264_13625 0.24 +0.9
3,185,780 + CA264_13625 0.24 +0.3
3,185,905 + CA264_13625 0.48 +0.3
3,185,905 + CA264_13625 0.48 -0.5
3,186,097 + CA264_13625 0.85 -2.4
3,186,098 - CA264_13625 0.85 +0.1
3,186,098 - CA264_13625 0.85 +0.3
3,186,101 + CA264_13625 0.86 -0.4
3,186,141 + -0.1
3,186,194 - +0.5
3,186,195 + -1.0
3,186,196 - +0.6
3,186,210 + +0.1
3,186,212 + -1.1
3,186,212 + -1.0
3,186,212 + -0.7
3,186,212 + +0.3
3,186,382 + CA264_13630 0.28 -2.2
3,186,382 + CA264_13630 0.28 -0.1
3,186,383 - CA264_13630 0.28 -1.4
3,186,383 - CA264_13630 0.28 +0.0
3,186,388 - CA264_13630 0.29 -0.6
3,186,578 + CA264_13630 0.77 -1.8
3,186,578 + CA264_13630 0.77 -2.0
3,186,612 + CA264_13630 0.85 -0.3
3,186,613 - CA264_13630 0.85 +1.5
3,186,867 + +0.6
3,186,890 - -1.1
3,186,890 - -1.3
3,186,950 + +1.9
3,186,951 - +0.7
3,186,970 + +0.3
3,186,975 + -0.1
3,186,990 - -2.1
3,187,031 + CA264_13635 0.10 +0.1
3,187,031 + CA264_13635 0.10 +0.4
3,187,032 - CA264_13635 0.11 -1.8
3,187,036 + CA264_13635 0.11 +0.7
3,187,044 - CA264_13635 0.11 -2.3
3,187,060 + CA264_13635 0.12 -0.5
3,187,139 + CA264_13635 0.16 -0.9
3,187,149 + CA264_13635 0.16 +0.1
3,187,149 + CA264_13635 0.16 -0.7
3,187,272 + CA264_13635 0.23 -0.5
3,187,273 - CA264_13635 0.23 -1.6
3,187,298 - CA264_13635 0.24 -1.6
3,187,383 - CA264_13635 0.28 -0.4
3,187,429 + CA264_13635 0.31 -1.6
3,187,618 + CA264_13635 0.40 +0.4

Or see this region's nucleotide sequence