Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13230

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13215 and CA264_13220 are separated by 183 nucleotidesCA264_13220 and CA264_13225 are separated by 31 nucleotidesCA264_13225 and CA264_13230 are separated by 115 nucleotidesCA264_13230 and CA264_13235 are separated by 81 nucleotides CA264_13215: CA264_13215 - hypothetical protein, at 3,081,255 to 3,081,674 _13215 CA264_13220: CA264_13220 - kazal domain protein, at 3,081,858 to 3,082,094 _13220 CA264_13225: CA264_13225 - cupin, at 3,082,126 to 3,082,497 _13225 CA264_13230: CA264_13230 - enoyl-ACP reductase, at 3,082,613 to 3,083,425 _13230 CA264_13235: CA264_13235 - DNA repair protein RecN, at 3,083,507 to 3,085,204 _13235 Position (kb) 3082 3083 3084Strain fitness (log2 ratio) -3 -2 -1 0 1at 3081.628 kb on - strand, within CA264_13215at 3081.674 kb on + strandat 3081.675 kb on - strandat 3081.703 kb on + strandat 3081.782 kb on + strandat 3081.782 kb on + strandat 3081.782 kb on + strandat 3081.817 kb on + strandat 3081.817 kb on + strandat 3081.821 kb on + strandat 3081.822 kb on - strandat 3081.839 kb on - strandat 3081.839 kb on - strandat 3081.842 kb on + strandat 3081.843 kb on - strandat 3081.852 kb on + strandat 3081.853 kb on - strandat 3081.853 kb on - strandat 3081.855 kb on - strandat 3081.988 kb on - strand, within CA264_13220at 3082.020 kb on + strand, within CA264_13220at 3082.055 kb on + strand, within CA264_13220at 3082.065 kb on - strand, within CA264_13220at 3082.111 kb on + strandat 3082.125 kb on + strandat 3082.193 kb on + strand, within CA264_13225at 3082.379 kb on + strand, within CA264_13225at 3082.379 kb on + strand, within CA264_13225at 3082.380 kb on - strand, within CA264_13225at 3082.380 kb on - strand, within CA264_13225at 3082.383 kb on + strand, within CA264_13225at 3082.384 kb on - strand, within CA264_13225at 3082.438 kb on + strand, within CA264_13225at 3082.438 kb on + strand, within CA264_13225at 3082.447 kb on - strand, within CA264_13225at 3082.550 kb on - strandat 3082.615 kb on - strandat 3082.615 kb on - strandat 3082.619 kb on - strandat 3083.454 kb on - strandat 3083.493 kb on - strandat 3083.493 kb on - strandat 3083.494 kb on + strandat 3083.494 kb on + strandat 3083.495 kb on - strandat 3083.509 kb on - strandat 3083.558 kb on - strandat 3083.588 kb on + strandat 3083.836 kb on - strand, within CA264_13235at 3083.843 kb on - strand, within CA264_13235at 3083.846 kb on + strand, within CA264_13235at 3083.885 kb on + strand, within CA264_13235at 3083.886 kb on - strand, within CA264_13235at 3084.188 kb on + strand, within CA264_13235at 3084.238 kb on + strand, within CA264_13235at 3084.239 kb on - strand, within CA264_13235at 3084.239 kb on - strand, within CA264_13235at 3084.240 kb on + strand, within CA264_13235at 3084.240 kb on + strand, within CA264_13235at 3084.240 kb on + strand, within CA264_13235at 3084.263 kb on + strand, within CA264_13235at 3084.326 kb on + strand, within CA264_13235at 3084.327 kb on - strand, within CA264_13235

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,081,628 - CA264_13215 0.89 -1.5
3,081,674 + -2.4
3,081,675 - -1.7
3,081,703 + +0.3
3,081,782 + -0.9
3,081,782 + -3.0
3,081,782 + -1.8
3,081,817 + -0.3
3,081,817 + -0.1
3,081,821 + -0.4
3,081,822 - -0.8
3,081,839 - -2.7
3,081,839 - -2.1
3,081,842 + -0.9
3,081,843 - -1.1
3,081,852 + -0.0
3,081,853 - +1.1
3,081,853 - -0.8
3,081,855 - -0.5
3,081,988 - CA264_13220 0.55 -0.7
3,082,020 + CA264_13220 0.68 -2.7
3,082,055 + CA264_13220 0.83 -2.2
3,082,065 - CA264_13220 0.87 -2.1
3,082,111 + -1.3
3,082,125 + -0.3
3,082,193 + CA264_13225 0.18 -0.5
3,082,379 + CA264_13225 0.68 -1.2
3,082,379 + CA264_13225 0.68 +0.6
3,082,380 - CA264_13225 0.68 -1.7
3,082,380 - CA264_13225 0.68 +0.1
3,082,383 + CA264_13225 0.69 -1.6
3,082,384 - CA264_13225 0.69 -0.5
3,082,438 + CA264_13225 0.84 -0.8
3,082,438 + CA264_13225 0.84 -1.8
3,082,447 - CA264_13225 0.86 -0.5
3,082,550 - -1.4
3,082,615 - -1.0
3,082,615 - -1.0
3,082,619 - -3.1
3,083,454 - -0.8
3,083,493 - +0.2
3,083,493 - -1.5
3,083,494 + +0.1
3,083,494 + +0.5
3,083,495 - -0.6
3,083,509 - -1.6
3,083,558 - -1.0
3,083,588 + +0.5
3,083,836 - CA264_13235 0.19 -1.1
3,083,843 - CA264_13235 0.20 -0.8
3,083,846 + CA264_13235 0.20 -0.2
3,083,885 + CA264_13235 0.22 +0.2
3,083,886 - CA264_13235 0.22 -2.2
3,084,188 + CA264_13235 0.40 -0.8
3,084,238 + CA264_13235 0.43 +0.4
3,084,239 - CA264_13235 0.43 -1.5
3,084,239 - CA264_13235 0.43 -0.6
3,084,240 + CA264_13235 0.43 +1.2
3,084,240 + CA264_13235 0.43 +0.2
3,084,240 + CA264_13235 0.43 +1.1
3,084,263 + CA264_13235 0.45 +1.7
3,084,326 + CA264_13235 0.48 +0.9
3,084,327 - CA264_13235 0.48 -1.4

Or see this region's nucleotide sequence