Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12925

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12915 and CA264_12920 are separated by 168 nucleotidesCA264_12920 and CA264_12925 are separated by 88 nucleotidesCA264_12925 and CA264_12930 are separated by 106 nucleotides CA264_12915: CA264_12915 - oligopeptidase B, at 3,010,529 to 3,012,727 _12915 CA264_12920: CA264_12920 - N-acetylmuramoyl-L-alanine amidase, at 3,012,896 to 3,013,531 _12920 CA264_12925: CA264_12925 - hypothetical protein, at 3,013,620 to 3,014,410 _12925 CA264_12930: CA264_12930 - cell wall hydrolase, at 3,014,517 to 3,015,518 _12930 Position (kb) 3013 3014 3015Strain fitness (log2 ratio) -2 -1 0 1at 3012.725 kb on + strandat 3012.751 kb on + strandat 3012.754 kb on - strandat 3012.814 kb on - strandat 3012.875 kb on + strandat 3012.880 kb on - strandat 3012.880 kb on - strandat 3013.059 kb on + strand, within CA264_12920at 3013.148 kb on + strand, within CA264_12920at 3013.245 kb on - strand, within CA264_12920at 3013.389 kb on - strand, within CA264_12920at 3013.389 kb on - strand, within CA264_12920at 3013.390 kb on + strand, within CA264_12920at 3013.392 kb on + strand, within CA264_12920at 3013.392 kb on + strand, within CA264_12920at 3013.431 kb on + strand, within CA264_12920at 3013.432 kb on - strand, within CA264_12920at 3013.484 kb on + strandat 3014.060 kb on + strand, within CA264_12925at 3014.290 kb on - strand, within CA264_12925at 3014.455 kb on + strandat 3014.490 kb on + strandat 3014.491 kb on - strandat 3014.519 kb on - strandat 3014.539 kb on + strandat 3014.540 kb on - strandat 3014.599 kb on - strandat 3014.680 kb on + strand, within CA264_12930at 3014.680 kb on + strand, within CA264_12930at 3014.703 kb on - strand, within CA264_12930at 3014.826 kb on - strand, within CA264_12930at 3014.832 kb on + strand, within CA264_12930at 3014.832 kb on + strand, within CA264_12930at 3014.832 kb on + strand, within CA264_12930at 3014.878 kb on + strand, within CA264_12930at 3014.879 kb on - strand, within CA264_12930at 3014.975 kb on + strand, within CA264_12930at 3014.975 kb on + strand, within CA264_12930at 3014.976 kb on - strand, within CA264_12930at 3014.981 kb on - strand, within CA264_12930at 3014.981 kb on - strand, within CA264_12930at 3015.036 kb on + strand, within CA264_12930at 3015.142 kb on + strand, within CA264_12930at 3015.142 kb on + strand, within CA264_12930at 3015.249 kb on + strand, within CA264_12930at 3015.252 kb on - strand, within CA264_12930

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,012,725 + -2.4
3,012,751 + -1.0
3,012,754 - -0.1
3,012,814 - -1.2
3,012,875 + -0.0
3,012,880 - -2.5
3,012,880 - -1.6
3,013,059 + CA264_12920 0.26 -1.1
3,013,148 + CA264_12920 0.40 +0.2
3,013,245 - CA264_12920 0.55 -1.3
3,013,389 - CA264_12920 0.78 +1.1
3,013,389 - CA264_12920 0.78 -0.5
3,013,390 + CA264_12920 0.78 +0.9
3,013,392 + CA264_12920 0.78 +0.6
3,013,392 + CA264_12920 0.78 +1.3
3,013,431 + CA264_12920 0.84 +0.9
3,013,432 - CA264_12920 0.84 -0.8
3,013,484 + +1.0
3,014,060 + CA264_12925 0.56 -0.1
3,014,290 - CA264_12925 0.85 -1.2
3,014,455 + -0.4
3,014,490 + +0.6
3,014,491 - -0.4
3,014,519 - -1.2
3,014,539 + +0.2
3,014,540 - -0.0
3,014,599 - +0.4
3,014,680 + CA264_12930 0.16 +1.3
3,014,680 + CA264_12930 0.16 +0.3
3,014,703 - CA264_12930 0.19 -1.2
3,014,826 - CA264_12930 0.31 -1.0
3,014,832 + CA264_12930 0.31 +0.8
3,014,832 + CA264_12930 0.31 +0.7
3,014,832 + CA264_12930 0.31 +0.7
3,014,878 + CA264_12930 0.36 +0.7
3,014,879 - CA264_12930 0.36 -0.2
3,014,975 + CA264_12930 0.46 +0.4
3,014,975 + CA264_12930 0.46 +0.3
3,014,976 - CA264_12930 0.46 -0.1
3,014,981 - CA264_12930 0.46 -0.5
3,014,981 - CA264_12930 0.46 -0.0
3,015,036 + CA264_12930 0.52 +0.4
3,015,142 + CA264_12930 0.62 +1.3
3,015,142 + CA264_12930 0.62 +0.3
3,015,249 + CA264_12930 0.73 +0.5
3,015,252 - CA264_12930 0.73 -1.2

Or see this region's nucleotide sequence