Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12695

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12680 and CA264_12685 are separated by 157 nucleotidesCA264_12685 and CA264_12690 are separated by 246 nucleotidesCA264_12690 and CA264_12695 are separated by 111 nucleotidesCA264_12695 and CA264_12700 are separated by 89 nucleotidesCA264_12700 and CA264_12705 are separated by 56 nucleotides CA264_12680: CA264_12680 - hypothetical protein, at 2,958,284 to 2,959,918 _12680 CA264_12685: CA264_12685 - hypothetical protein, at 2,960,076 to 2,960,261 _12685 CA264_12690: CA264_12690 - tRNA-Leu, at 2,960,508 to 2,960,589 _12690 CA264_12695: CA264_12695 - phosphatase PAP2 family protein, at 2,960,701 to 2,961,420 _12695 CA264_12700: CA264_12700 - RNA 2',3'-cyclic phosphodiesterase, at 2,961,510 to 2,962,055 _12700 CA264_12705: CA264_12705 - decaheme cytochrome c MtrA, at 2,962,112 to 2,962,603 _12705 Position (kb) 2960 2961 2962Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2959.806 kb on + strandat 2959.831 kb on - strandat 2959.914 kb on - strandat 2959.914 kb on - strandat 2959.917 kb on - strandat 2959.957 kb on + strandat 2959.958 kb on - strandat 2959.992 kb on + strandat 2960.070 kb on - strandat 2960.129 kb on + strand, within CA264_12685at 2960.171 kb on + strand, within CA264_12685at 2960.171 kb on + strand, within CA264_12685at 2960.171 kb on + strand, within CA264_12685at 2960.172 kb on - strand, within CA264_12685at 2960.172 kb on - strand, within CA264_12685at 2960.172 kb on - strand, within CA264_12685at 2960.172 kb on - strand, within CA264_12685at 2960.173 kb on + strand, within CA264_12685at 2960.173 kb on + strand, within CA264_12685at 2960.174 kb on - strand, within CA264_12685at 2960.230 kb on + strand, within CA264_12685at 2960.230 kb on + strand, within CA264_12685at 2960.231 kb on - strand, within CA264_12685at 2960.231 kb on - strand, within CA264_12685at 2960.341 kb on - strandat 2960.341 kb on - strandat 2960.373 kb on - strandat 2960.497 kb on - strandat 2960.497 kb on - strandat 2960.599 kb on + strandat 2960.600 kb on - strandat 2960.601 kb on + strandat 2960.602 kb on - strandat 2960.784 kb on + strand, within CA264_12695at 2960.840 kb on + strand, within CA264_12695at 2960.845 kb on + strand, within CA264_12695at 2960.889 kb on + strand, within CA264_12695at 2960.985 kb on + strand, within CA264_12695at 2961.060 kb on - strand, within CA264_12695at 2961.084 kb on + strand, within CA264_12695at 2961.146 kb on + strand, within CA264_12695at 2961.146 kb on + strand, within CA264_12695at 2961.147 kb on - strand, within CA264_12695at 2961.147 kb on - strand, within CA264_12695at 2961.149 kb on + strand, within CA264_12695at 2961.216 kb on + strand, within CA264_12695at 2961.330 kb on + strand, within CA264_12695at 2961.331 kb on - strand, within CA264_12695at 2961.359 kb on - strandat 2961.402 kb on + strandat 2961.420 kb on + strandat 2961.420 kb on + strandat 2961.420 kb on + strandat 2961.420 kb on + strandat 2961.420 kb on + strandat 2961.420 kb on + strandat 2961.421 kb on - strandat 2961.421 kb on - strandat 2961.440 kb on + strandat 2961.440 kb on + strandat 2961.495 kb on - strandat 2961.495 kb on - strandat 2961.497 kb on + strandat 2961.498 kb on - strandat 2961.571 kb on + strand, within CA264_12700at 2961.614 kb on + strand, within CA264_12700at 2961.683 kb on - strand, within CA264_12700at 2961.698 kb on - strand, within CA264_12700at 2961.728 kb on + strand, within CA264_12700at 2961.749 kb on - strand, within CA264_12700at 2961.749 kb on - strand, within CA264_12700at 2961.862 kb on + strand, within CA264_12700at 2961.863 kb on - strand, within CA264_12700at 2961.890 kb on + strand, within CA264_12700at 2961.891 kb on - strand, within CA264_12700at 2962.078 kb on + strandat 2962.081 kb on + strandat 2962.081 kb on + strandat 2962.107 kb on + strandat 2962.108 kb on - strandat 2962.138 kb on - strandat 2962.264 kb on - strand, within CA264_12705at 2962.266 kb on - strand, within CA264_12705at 2962.299 kb on + strand, within CA264_12705at 2962.322 kb on + strand, within CA264_12705at 2962.322 kb on + strand, within CA264_12705at 2962.322 kb on + strand, within CA264_12705at 2962.360 kb on - strand, within CA264_12705

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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2,959,806 + -0.8
2,959,831 - -0.4
2,959,914 - +0.9
2,959,914 - -0.7
2,959,917 - +0.9
2,959,957 + +0.4
2,959,958 - +0.1
2,959,992 + -0.2
2,960,070 - +0.9
2,960,129 + CA264_12685 0.28 -0.6
2,960,171 + CA264_12685 0.51 -0.6
2,960,171 + CA264_12685 0.51 -0.1
2,960,171 + CA264_12685 0.51 -0.4
2,960,172 - CA264_12685 0.52 +0.4
2,960,172 - CA264_12685 0.52 +0.6
2,960,172 - CA264_12685 0.52 -0.7
2,960,172 - CA264_12685 0.52 +0.9
2,960,173 + CA264_12685 0.52 -0.6
2,960,173 + CA264_12685 0.52 +0.0
2,960,174 - CA264_12685 0.53 +0.3
2,960,230 + CA264_12685 0.83 -1.1
2,960,230 + CA264_12685 0.83 -0.8
2,960,231 - CA264_12685 0.83 +2.1
2,960,231 - CA264_12685 0.83 +0.6
2,960,341 - +1.0
2,960,341 - +0.8
2,960,373 - -0.5
2,960,497 - -0.4
2,960,497 - -0.9
2,960,599 + +0.6
2,960,600 - +1.6
2,960,601 + +0.9
2,960,602 - +0.6
2,960,784 + CA264_12695 0.12 -1.2
2,960,840 + CA264_12695 0.19 +1.1
2,960,845 + CA264_12695 0.20 +0.2
2,960,889 + CA264_12695 0.26 -1.4
2,960,985 + CA264_12695 0.39 -0.1
2,961,060 - CA264_12695 0.50 -0.9
2,961,084 + CA264_12695 0.53 +0.0
2,961,146 + CA264_12695 0.62 -0.2
2,961,146 + CA264_12695 0.62 +0.5
2,961,147 - CA264_12695 0.62 +0.1
2,961,147 - CA264_12695 0.62 -1.0
2,961,149 + CA264_12695 0.62 +0.7
2,961,216 + CA264_12695 0.72 +0.6
2,961,330 + CA264_12695 0.87 +0.6
2,961,331 - CA264_12695 0.88 -0.2
2,961,359 - +0.1
2,961,402 + -0.5
2,961,420 + +1.7
2,961,420 + +0.5
2,961,420 + -0.1
2,961,420 + -0.8
2,961,420 + -1.7
2,961,420 + -0.1
2,961,421 - -0.1
2,961,421 - +0.1
2,961,440 + +0.7
2,961,440 + -2.9
2,961,495 - +0.1
2,961,495 - -1.8
2,961,497 + +0.0
2,961,498 - -1.6
2,961,571 + CA264_12700 0.11 -0.6
2,961,614 + CA264_12700 0.19 +1.0
2,961,683 - CA264_12700 0.32 -0.4
2,961,698 - CA264_12700 0.34 +0.2
2,961,728 + CA264_12700 0.40 -0.1
2,961,749 - CA264_12700 0.44 +0.3
2,961,749 - CA264_12700 0.44 +0.1
2,961,862 + CA264_12700 0.64 +1.0
2,961,863 - CA264_12700 0.65 -1.8
2,961,890 + CA264_12700 0.70 -1.1
2,961,891 - CA264_12700 0.70 +1.7
2,962,078 + -1.1
2,962,081 + +1.1
2,962,081 + +0.7
2,962,107 + +1.0
2,962,108 - -1.6
2,962,138 - -1.1
2,962,264 - CA264_12705 0.31 -0.8
2,962,266 - CA264_12705 0.31 -1.2
2,962,299 + CA264_12705 0.38 +1.0
2,962,322 + CA264_12705 0.43 -1.8
2,962,322 + CA264_12705 0.43 -0.7
2,962,322 + CA264_12705 0.43 -0.6
2,962,360 - CA264_12705 0.50 -0.8

Or see this region's nucleotide sequence