Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11960

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11955 and CA264_11960 are separated by 59 nucleotidesCA264_11960 and CA264_11965 are separated by 416 nucleotides CA264_11955: CA264_11955 - VWA domain-containing protein, at 2,778,389 to 2,779,774 _11955 CA264_11960: CA264_11960 - transketolase, at 2,779,834 to 2,780,793 _11960 CA264_11965: CA264_11965 - RNA polymerase subunit sigma, at 2,781,210 to 2,781,749 _11965 Position (kb) 2779 2780 2781Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2778.954 kb on + strand, within CA264_11955at 2778.955 kb on - strand, within CA264_11955at 2779.056 kb on + strand, within CA264_11955at 2779.114 kb on - strand, within CA264_11955at 2779.140 kb on - strand, within CA264_11955at 2779.145 kb on + strand, within CA264_11955at 2779.146 kb on - strand, within CA264_11955at 2779.146 kb on - strand, within CA264_11955at 2779.166 kb on - strand, within CA264_11955at 2779.203 kb on + strand, within CA264_11955at 2779.208 kb on + strand, within CA264_11955at 2779.221 kb on + strand, within CA264_11955at 2779.222 kb on - strand, within CA264_11955at 2779.290 kb on + strand, within CA264_11955at 2779.290 kb on + strand, within CA264_11955at 2779.290 kb on + strand, within CA264_11955at 2779.311 kb on + strand, within CA264_11955at 2779.311 kb on + strand, within CA264_11955at 2779.312 kb on - strand, within CA264_11955at 2779.312 kb on - strand, within CA264_11955at 2779.313 kb on + strand, within CA264_11955at 2779.313 kb on + strand, within CA264_11955at 2779.313 kb on + strand, within CA264_11955at 2779.436 kb on + strand, within CA264_11955at 2779.437 kb on - strand, within CA264_11955at 2779.618 kb on - strand, within CA264_11955at 2779.667 kb on - strandat 2779.676 kb on + strandat 2779.682 kb on - strandat 2779.717 kb on - strandat 2779.717 kb on - strandat 2779.772 kb on + strandat 2779.776 kb on - strandat 2779.815 kb on + strandat 2779.830 kb on - strandat 2780.825 kb on + strandat 2780.830 kb on + strandat 2780.830 kb on + strandat 2780.831 kb on - strandat 2780.877 kb on + strandat 2780.878 kb on - strandat 2780.878 kb on - strandat 2781.031 kb on + strandat 2781.081 kb on + strandat 2781.154 kb on - strandat 2781.155 kb on + strandat 2781.155 kb on + strandat 2781.288 kb on + strand, within CA264_11965at 2781.288 kb on + strand, within CA264_11965at 2781.303 kb on + strand, within CA264_11965at 2781.303 kb on + strand, within CA264_11965at 2781.304 kb on - strand, within CA264_11965at 2781.376 kb on + strand, within CA264_11965at 2781.416 kb on - strand, within CA264_11965at 2781.417 kb on + strand, within CA264_11965at 2781.417 kb on + strand, within CA264_11965at 2781.417 kb on + strand, within CA264_11965at 2781.417 kb on + strand, within CA264_11965at 2781.418 kb on - strand, within CA264_11965at 2781.418 kb on - strand, within CA264_11965at 2781.418 kb on - strand, within CA264_11965at 2781.418 kb on - strand, within CA264_11965at 2781.505 kb on + strand, within CA264_11965at 2781.563 kb on - strand, within CA264_11965at 2781.574 kb on + strand, within CA264_11965at 2781.702 kb on + strandat 2781.724 kb on + strandat 2781.748 kb on - strandat 2781.780 kb on + strandat 2781.781 kb on - strandat 2781.781 kb on - strandat 2781.781 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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2,778,954 + CA264_11955 0.41 -2.0
2,778,955 - CA264_11955 0.41 -0.6
2,779,056 + CA264_11955 0.48 +0.3
2,779,114 - CA264_11955 0.52 -0.8
2,779,140 - CA264_11955 0.54 +0.5
2,779,145 + CA264_11955 0.55 -2.0
2,779,146 - CA264_11955 0.55 +0.2
2,779,146 - CA264_11955 0.55 -1.1
2,779,166 - CA264_11955 0.56 -0.0
2,779,203 + CA264_11955 0.59 -1.9
2,779,208 + CA264_11955 0.59 -3.3
2,779,221 + CA264_11955 0.60 -0.8
2,779,222 - CA264_11955 0.60 -0.6
2,779,290 + CA264_11955 0.65 -2.1
2,779,290 + CA264_11955 0.65 +0.6
2,779,290 + CA264_11955 0.65 -1.0
2,779,311 + CA264_11955 0.67 -1.0
2,779,311 + CA264_11955 0.67 +1.0
2,779,312 - CA264_11955 0.67 -1.3
2,779,312 - CA264_11955 0.67 -0.9
2,779,313 + CA264_11955 0.67 -2.1
2,779,313 + CA264_11955 0.67 -2.5
2,779,313 + CA264_11955 0.67 -0.7
2,779,436 + CA264_11955 0.76 +0.7
2,779,437 - CA264_11955 0.76 -0.7
2,779,618 - CA264_11955 0.89 +0.8
2,779,667 - -0.5
2,779,676 + -2.2
2,779,682 - +0.8
2,779,717 - +0.3
2,779,717 - -2.1
2,779,772 + -0.4
2,779,776 - +2.2
2,779,815 + -0.2
2,779,830 - +0.2
2,780,825 + -0.7
2,780,830 + -2.7
2,780,830 + -4.1
2,780,831 - -2.5
2,780,877 + -1.4
2,780,878 - -1.5
2,780,878 - -1.2
2,781,031 + +0.8
2,781,081 + -1.0
2,781,154 - +0.0
2,781,155 + -0.5
2,781,155 + -0.8
2,781,288 + CA264_11965 0.14 -0.5
2,781,288 + CA264_11965 0.14 +0.0
2,781,303 + CA264_11965 0.17 -0.4
2,781,303 + CA264_11965 0.17 +1.4
2,781,304 - CA264_11965 0.17 -1.3
2,781,376 + CA264_11965 0.31 +0.3
2,781,416 - CA264_11965 0.38 -0.4
2,781,417 + CA264_11965 0.38 -0.6
2,781,417 + CA264_11965 0.38 -0.8
2,781,417 + CA264_11965 0.38 -0.1
2,781,417 + CA264_11965 0.38 -1.0
2,781,418 - CA264_11965 0.39 -0.6
2,781,418 - CA264_11965 0.39 -1.4
2,781,418 - CA264_11965 0.39 -0.2
2,781,418 - CA264_11965 0.39 -1.7
2,781,505 + CA264_11965 0.55 -1.1
2,781,563 - CA264_11965 0.65 +2.0
2,781,574 + CA264_11965 0.67 -1.3
2,781,702 + -0.1
2,781,724 + -0.8
2,781,748 - +0.2
2,781,780 + -1.0
2,781,781 - -1.2
2,781,781 - +0.3
2,781,781 - -2.2

Or see this region's nucleotide sequence