Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11950

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11940 and CA264_11945 are separated by 96 nucleotidesCA264_11945 and CA264_11950 are separated by 163 nucleotidesCA264_11950 and CA264_11955 are separated by 47 nucleotides CA264_11940: CA264_11940 - peptidase M23, at 2,774,975 to 2,776,774 _11940 CA264_11945: CA264_11945 - peroxiredoxin, at 2,776,871 to 2,777,320 _11945 CA264_11950: CA264_11950 - transketolase, at 2,777,484 to 2,778,341 _11950 CA264_11955: CA264_11955 - VWA domain-containing protein, at 2,778,389 to 2,779,774 _11955 Position (kb) 2777 2778 2779Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2776.535 kb on + strand, within CA264_11940at 2776.581 kb on + strand, within CA264_11940at 2776.581 kb on + strand, within CA264_11940at 2776.582 kb on - strand, within CA264_11940at 2776.649 kb on + strandat 2776.650 kb on - strandat 2776.650 kb on - strandat 2776.650 kb on - strandat 2776.716 kb on + strandat 2776.717 kb on - strandat 2776.728 kb on + strandat 2776.757 kb on + strandat 2776.758 kb on - strandat 2776.758 kb on - strandat 2776.758 kb on - strandat 2776.760 kb on - strandat 2776.770 kb on + strandat 2776.770 kb on + strandat 2776.770 kb on + strandat 2776.772 kb on + strandat 2776.773 kb on - strandat 2776.871 kb on - strandat 2776.871 kb on - strandat 2776.936 kb on - strand, within CA264_11945at 2776.974 kb on - strand, within CA264_11945at 2776.974 kb on - strand, within CA264_11945at 2776.974 kb on - strand, within CA264_11945at 2776.980 kb on - strand, within CA264_11945at 2777.036 kb on + strand, within CA264_11945at 2777.036 kb on + strand, within CA264_11945at 2777.036 kb on + strand, within CA264_11945at 2777.037 kb on - strand, within CA264_11945at 2777.060 kb on + strand, within CA264_11945at 2777.068 kb on - strand, within CA264_11945at 2777.068 kb on - strand, within CA264_11945at 2777.213 kb on + strand, within CA264_11945at 2777.214 kb on - strand, within CA264_11945at 2777.276 kb on - strandat 2777.377 kb on + strandat 2777.398 kb on + strandat 2777.430 kb on + strandat 2777.430 kb on + strandat 2777.430 kb on + strandat 2777.430 kb on + strandat 2777.477 kb on - strandat 2778.385 kb on + strandat 2778.385 kb on + strandat 2778.582 kb on + strand, within CA264_11955at 2778.582 kb on + strand, within CA264_11955at 2778.583 kb on - strand, within CA264_11955at 2778.664 kb on + strand, within CA264_11955at 2778.764 kb on + strand, within CA264_11955at 2778.765 kb on - strand, within CA264_11955at 2778.954 kb on + strand, within CA264_11955at 2778.955 kb on - strand, within CA264_11955at 2779.056 kb on + strand, within CA264_11955at 2779.114 kb on - strand, within CA264_11955at 2779.140 kb on - strand, within CA264_11955at 2779.145 kb on + strand, within CA264_11955at 2779.146 kb on - strand, within CA264_11955at 2779.146 kb on - strand, within CA264_11955at 2779.166 kb on - strand, within CA264_11955at 2779.203 kb on + strand, within CA264_11955at 2779.208 kb on + strand, within CA264_11955at 2779.221 kb on + strand, within CA264_11955at 2779.222 kb on - strand, within CA264_11955at 2779.290 kb on + strand, within CA264_11955at 2779.290 kb on + strand, within CA264_11955at 2779.290 kb on + strand, within CA264_11955at 2779.311 kb on + strand, within CA264_11955at 2779.311 kb on + strand, within CA264_11955at 2779.312 kb on - strand, within CA264_11955at 2779.312 kb on - strand, within CA264_11955at 2779.313 kb on + strand, within CA264_11955at 2779.313 kb on + strand, within CA264_11955at 2779.313 kb on + strand, within CA264_11955

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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2,776,535 + CA264_11940 0.87 +0.9
2,776,581 + CA264_11940 0.89 +1.8
2,776,581 + CA264_11940 0.89 +0.4
2,776,582 - CA264_11940 0.89 -0.2
2,776,649 + -0.4
2,776,650 - +1.1
2,776,650 - -0.1
2,776,650 - +1.9
2,776,716 + -2.4
2,776,717 - +0.4
2,776,728 + -0.3
2,776,757 + -0.8
2,776,758 - -0.1
2,776,758 - +0.5
2,776,758 - +1.5
2,776,760 - +1.3
2,776,770 + -1.9
2,776,770 + -1.8
2,776,770 + -1.3
2,776,772 + -0.7
2,776,773 - -0.0
2,776,871 - -2.2
2,776,871 - -1.3
2,776,936 - CA264_11945 0.14 -0.3
2,776,974 - CA264_11945 0.23 -0.5
2,776,974 - CA264_11945 0.23 +0.6
2,776,974 - CA264_11945 0.23 +0.3
2,776,980 - CA264_11945 0.24 +0.9
2,777,036 + CA264_11945 0.37 -1.6
2,777,036 + CA264_11945 0.37 -1.3
2,777,036 + CA264_11945 0.37 -0.4
2,777,037 - CA264_11945 0.37 -0.4
2,777,060 + CA264_11945 0.42 +1.6
2,777,068 - CA264_11945 0.44 +0.5
2,777,068 - CA264_11945 0.44 -0.1
2,777,213 + CA264_11945 0.76 -1.9
2,777,214 - CA264_11945 0.76 -0.6
2,777,276 - -1.5
2,777,377 + -1.3
2,777,398 + +0.0
2,777,430 + -0.9
2,777,430 + +0.8
2,777,430 + -1.3
2,777,430 + -0.8
2,777,477 - +0.4
2,778,385 + -2.4
2,778,385 + -0.1
2,778,582 + CA264_11955 0.14 -1.7
2,778,582 + CA264_11955 0.14 -2.6
2,778,583 - CA264_11955 0.14 -2.2
2,778,664 + CA264_11955 0.20 -2.9
2,778,764 + CA264_11955 0.27 +4.6
2,778,765 - CA264_11955 0.27 +0.3
2,778,954 + CA264_11955 0.41 -2.0
2,778,955 - CA264_11955 0.41 -0.6
2,779,056 + CA264_11955 0.48 +0.3
2,779,114 - CA264_11955 0.52 -0.8
2,779,140 - CA264_11955 0.54 +0.5
2,779,145 + CA264_11955 0.55 -2.0
2,779,146 - CA264_11955 0.55 +0.2
2,779,146 - CA264_11955 0.55 -1.1
2,779,166 - CA264_11955 0.56 -0.0
2,779,203 + CA264_11955 0.59 -1.9
2,779,208 + CA264_11955 0.59 -3.3
2,779,221 + CA264_11955 0.60 -0.8
2,779,222 - CA264_11955 0.60 -0.6
2,779,290 + CA264_11955 0.65 -2.1
2,779,290 + CA264_11955 0.65 +0.6
2,779,290 + CA264_11955 0.65 -1.0
2,779,311 + CA264_11955 0.67 -1.0
2,779,311 + CA264_11955 0.67 +1.0
2,779,312 - CA264_11955 0.67 -1.3
2,779,312 - CA264_11955 0.67 -0.9
2,779,313 + CA264_11955 0.67 -2.1
2,779,313 + CA264_11955 0.67 -2.5
2,779,313 + CA264_11955 0.67 -0.7

Or see this region's nucleotide sequence