Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11645

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11635 and CA264_11640 are separated by 161 nucleotidesCA264_11640 and CA264_11645 are separated by 97 nucleotidesCA264_11645 and CA264_11650 are separated by 368 nucleotides CA264_11635: CA264_11635 - hypothetical protein, at 2,713,615 to 2,714,991 _11635 CA264_11640: CA264_11640 - hypothetical protein, at 2,715,153 to 2,715,608 _11640 CA264_11645: CA264_11645 - peptidase, at 2,715,706 to 2,717,505 _11645 CA264_11650: CA264_11650 - hypothetical protein, at 2,717,874 to 2,718,308 _11650 Position (kb) 2715 2716 2717 2718Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2714.718 kb on - strand, within CA264_11635at 2714.724 kb on + strand, within CA264_11635at 2714.724 kb on + strand, within CA264_11635at 2714.725 kb on - strand, within CA264_11635at 2714.725 kb on - strand, within CA264_11635at 2714.786 kb on + strand, within CA264_11635at 2714.787 kb on - strand, within CA264_11635at 2714.787 kb on - strand, within CA264_11635at 2714.789 kb on + strand, within CA264_11635at 2714.789 kb on + strand, within CA264_11635at 2714.790 kb on - strand, within CA264_11635at 2714.798 kb on - strand, within CA264_11635at 2714.880 kb on - strandat 2714.909 kb on - strandat 2714.946 kb on + strandat 2715.036 kb on + strandat 2715.036 kb on + strandat 2715.126 kb on - strandat 2715.164 kb on + strandat 2715.251 kb on + strand, within CA264_11640at 2715.271 kb on - strand, within CA264_11640at 2715.308 kb on - strand, within CA264_11640at 2715.308 kb on - strand, within CA264_11640at 2715.424 kb on - strand, within CA264_11640at 2715.441 kb on - strand, within CA264_11640at 2715.480 kb on + strand, within CA264_11640at 2715.480 kb on + strand, within CA264_11640at 2715.486 kb on + strand, within CA264_11640at 2715.489 kb on - strand, within CA264_11640at 2715.566 kb on + strandat 2715.598 kb on + strandat 2715.606 kb on + strandat 2715.644 kb on - strandat 2715.644 kb on - strandat 2715.644 kb on - strandat 2715.663 kb on + strandat 2715.789 kb on - strandat 2715.794 kb on - strandat 2715.870 kb on + strandat 2715.870 kb on + strandat 2715.873 kb on + strandat 2715.873 kb on + strandat 2715.873 kb on + strandat 2715.874 kb on - strandat 2715.874 kb on - strandat 2715.907 kb on + strand, within CA264_11645at 2715.908 kb on - strand, within CA264_11645at 2715.989 kb on + strand, within CA264_11645at 2715.990 kb on - strand, within CA264_11645at 2716.012 kb on - strand, within CA264_11645at 2716.065 kb on + strand, within CA264_11645at 2716.088 kb on + strand, within CA264_11645at 2716.090 kb on + strand, within CA264_11645at 2716.091 kb on - strand, within CA264_11645at 2716.091 kb on - strand, within CA264_11645at 2716.191 kb on + strand, within CA264_11645at 2716.233 kb on - strand, within CA264_11645at 2716.253 kb on - strand, within CA264_11645at 2716.255 kb on + strand, within CA264_11645at 2716.256 kb on - strand, within CA264_11645at 2716.281 kb on - strand, within CA264_11645at 2716.281 kb on - strand, within CA264_11645at 2716.281 kb on - strand, within CA264_11645at 2716.281 kb on - strand, within CA264_11645at 2716.296 kb on - strand, within CA264_11645at 2716.326 kb on + strand, within CA264_11645at 2716.327 kb on - strand, within CA264_11645at 2716.346 kb on + strand, within CA264_11645at 2716.347 kb on - strand, within CA264_11645at 2716.354 kb on + strand, within CA264_11645at 2716.355 kb on - strand, within CA264_11645at 2716.355 kb on - strand, within CA264_11645at 2716.355 kb on - strand, within CA264_11645at 2716.376 kb on + strand, within CA264_11645at 2716.404 kb on + strand, within CA264_11645at 2716.405 kb on - strand, within CA264_11645at 2716.405 kb on - strand, within CA264_11645at 2716.463 kb on - strand, within CA264_11645at 2716.474 kb on + strand, within CA264_11645at 2716.474 kb on + strand, within CA264_11645at 2716.531 kb on - strand, within CA264_11645at 2716.535 kb on - strand, within CA264_11645at 2716.557 kb on + strand, within CA264_11645at 2716.558 kb on - strand, within CA264_11645at 2716.561 kb on + strand, within CA264_11645at 2716.561 kb on + strand, within CA264_11645at 2716.562 kb on - strand, within CA264_11645at 2716.562 kb on - strand, within CA264_11645at 2716.562 kb on - strand, within CA264_11645at 2716.620 kb on + strand, within CA264_11645at 2716.620 kb on + strand, within CA264_11645at 2716.621 kb on - strand, within CA264_11645at 2716.650 kb on + strand, within CA264_11645at 2716.650 kb on + strand, within CA264_11645at 2716.660 kb on - strand, within CA264_11645at 2716.660 kb on - strand, within CA264_11645at 2716.759 kb on + strand, within CA264_11645at 2716.770 kb on + strand, within CA264_11645at 2716.770 kb on + strand, within CA264_11645at 2716.814 kb on - strand, within CA264_11645at 2716.836 kb on + strand, within CA264_11645at 2716.837 kb on - strand, within CA264_11645at 2716.837 kb on - strand, within CA264_11645at 2716.843 kb on + strand, within CA264_11645at 2716.844 kb on - strand, within CA264_11645at 2716.845 kb on + strand, within CA264_11645at 2716.846 kb on - strand, within CA264_11645at 2716.846 kb on - strand, within CA264_11645at 2716.867 kb on + strand, within CA264_11645at 2716.868 kb on - strand, within CA264_11645at 2716.873 kb on - strand, within CA264_11645at 2716.875 kb on + strand, within CA264_11645at 2716.875 kb on + strand, within CA264_11645at 2716.925 kb on + strand, within CA264_11645at 2717.044 kb on + strand, within CA264_11645at 2717.044 kb on + strand, within CA264_11645at 2717.075 kb on - strand, within CA264_11645at 2717.118 kb on + strand, within CA264_11645at 2717.134 kb on + strand, within CA264_11645at 2717.171 kb on - strand, within CA264_11645at 2717.193 kb on - strand, within CA264_11645at 2717.206 kb on - strand, within CA264_11645at 2717.207 kb on + strand, within CA264_11645at 2717.222 kb on + strand, within CA264_11645at 2717.285 kb on + strand, within CA264_11645at 2717.292 kb on - strand, within CA264_11645at 2717.319 kb on + strand, within CA264_11645at 2717.382 kb on + strandat 2717.394 kb on - strandat 2717.394 kb on - strandat 2717.401 kb on - strandat 2717.444 kb on + strandat 2717.496 kb on + strandat 2717.497 kb on - strandat 2717.497 kb on - strandat 2717.502 kb on - strandat 2717.502 kb on - strandat 2717.502 kb on - strandat 2717.506 kb on + strandat 2717.506 kb on + strandat 2717.510 kb on - strandat 2717.581 kb on - strandat 2717.595 kb on + strandat 2717.595 kb on + strandat 2717.605 kb on + strandat 2717.606 kb on - strandat 2717.606 kb on - strandat 2717.611 kb on + strandat 2717.621 kb on - strandat 2717.683 kb on + strandat 2717.684 kb on - strandat 2717.696 kb on + strandat 2717.749 kb on + strandat 2717.750 kb on - strandat 2717.763 kb on + strandat 2717.770 kb on + strandat 2717.776 kb on - strandat 2717.790 kb on - strandat 2717.875 kb on + strandat 2717.898 kb on + strandat 2717.900 kb on + strandat 2717.900 kb on + strandat 2717.901 kb on - strandat 2717.920 kb on - strand, within CA264_11650at 2717.920 kb on - strand, within CA264_11650at 2717.921 kb on + strand, within CA264_11650at 2717.941 kb on + strand, within CA264_11650at 2718.003 kb on + strand, within CA264_11650at 2718.066 kb on + strand, within CA264_11650at 2718.067 kb on - strand, within CA264_11650at 2718.075 kb on + strand, within CA264_11650at 2718.075 kb on + strand, within CA264_11650at 2718.075 kb on + strand, within CA264_11650at 2718.075 kb on + strand, within CA264_11650at 2718.076 kb on - strand, within CA264_11650at 2718.181 kb on - strand, within CA264_11650at 2718.200 kb on + strand, within CA264_11650at 2718.219 kb on + strand, within CA264_11650at 2718.230 kb on + strand, within CA264_11650at 2718.240 kb on - strand, within CA264_11650at 2718.240 kb on - strand, within CA264_11650at 2718.253 kb on - strand, within CA264_11650at 2718.276 kb on + strandat 2718.297 kb on - strandat 2718.320 kb on + strandat 2718.329 kb on - strandat 2718.332 kb on + strandat 2718.373 kb on - strandat 2718.373 kb on - strandat 2718.431 kb on + strandat 2718.464 kb on + strandat 2718.464 kb on + strandat 2718.484 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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2,714,718 - CA264_11635 0.80 -0.3
2,714,724 + CA264_11635 0.81 +0.3
2,714,724 + CA264_11635 0.81 -1.2
2,714,725 - CA264_11635 0.81 +2.0
2,714,725 - CA264_11635 0.81 +1.5
2,714,786 + CA264_11635 0.85 -1.0
2,714,787 - CA264_11635 0.85 +0.5
2,714,787 - CA264_11635 0.85 +0.0
2,714,789 + CA264_11635 0.85 -0.2
2,714,789 + CA264_11635 0.85 +0.9
2,714,790 - CA264_11635 0.85 -0.2
2,714,798 - CA264_11635 0.86 +0.1
2,714,880 - +0.2
2,714,909 - +1.9
2,714,946 + -0.2
2,715,036 + +0.7
2,715,036 + +0.1
2,715,126 - +1.7
2,715,164 + +0.8
2,715,251 + CA264_11640 0.21 -0.6
2,715,271 - CA264_11640 0.26 -0.2
2,715,308 - CA264_11640 0.34 -0.3
2,715,308 - CA264_11640 0.34 -0.3
2,715,424 - CA264_11640 0.59 -0.8
2,715,441 - CA264_11640 0.63 -2.3
2,715,480 + CA264_11640 0.72 +0.1
2,715,480 + CA264_11640 0.72 +0.5
2,715,486 + CA264_11640 0.73 -0.0
2,715,489 - CA264_11640 0.74 -1.9
2,715,566 + +0.6
2,715,598 + -0.4
2,715,606 + -0.1
2,715,644 - -1.2
2,715,644 - -0.8
2,715,644 - -1.2
2,715,663 + +0.2
2,715,789 - -0.1
2,715,794 - -1.2
2,715,870 + +3.0
2,715,870 + +1.1
2,715,873 + +0.7
2,715,873 + -0.3
2,715,873 + +0.4
2,715,874 - -0.2
2,715,874 - -1.6
2,715,907 + CA264_11645 0.11 -0.3
2,715,908 - CA264_11645 0.11 -1.2
2,715,989 + CA264_11645 0.16 +0.0
2,715,990 - CA264_11645 0.16 +0.8
2,716,012 - CA264_11645 0.17 -1.5
2,716,065 + CA264_11645 0.20 +0.1
2,716,088 + CA264_11645 0.21 +0.2
2,716,090 + CA264_11645 0.21 +0.4
2,716,091 - CA264_11645 0.21 -1.3
2,716,091 - CA264_11645 0.21 -3.2
2,716,191 + CA264_11645 0.27 +0.7
2,716,233 - CA264_11645 0.29 +1.7
2,716,253 - CA264_11645 0.30 -1.6
2,716,255 + CA264_11645 0.30 +0.5
2,716,256 - CA264_11645 0.31 -2.1
2,716,281 - CA264_11645 0.32 +1.0
2,716,281 - CA264_11645 0.32 -0.7
2,716,281 - CA264_11645 0.32 -2.1
2,716,281 - CA264_11645 0.32 -1.0
2,716,296 - CA264_11645 0.33 -1.7
2,716,326 + CA264_11645 0.34 +0.1
2,716,327 - CA264_11645 0.34 -0.3
2,716,346 + CA264_11645 0.36 -0.5
2,716,347 - CA264_11645 0.36 +0.2
2,716,354 + CA264_11645 0.36 -1.2
2,716,355 - CA264_11645 0.36 -0.4
2,716,355 - CA264_11645 0.36 -1.7
2,716,355 - CA264_11645 0.36 -0.4
2,716,376 + CA264_11645 0.37 +0.7
2,716,404 + CA264_11645 0.39 +1.5
2,716,405 - CA264_11645 0.39 -2.2
2,716,405 - CA264_11645 0.39 -2.5
2,716,463 - CA264_11645 0.42 -1.8
2,716,474 + CA264_11645 0.43 -0.2
2,716,474 + CA264_11645 0.43 -0.4
2,716,531 - CA264_11645 0.46 -1.8
2,716,535 - CA264_11645 0.46 -0.8
2,716,557 + CA264_11645 0.47 +0.5
2,716,558 - CA264_11645 0.47 -0.6
2,716,561 + CA264_11645 0.47 +0.1
2,716,561 + CA264_11645 0.47 +0.5
2,716,562 - CA264_11645 0.48 -2.7
2,716,562 - CA264_11645 0.48 +0.4
2,716,562 - CA264_11645 0.48 -0.4
2,716,620 + CA264_11645 0.51 +1.5
2,716,620 + CA264_11645 0.51 -0.7
2,716,621 - CA264_11645 0.51 -0.4
2,716,650 + CA264_11645 0.52 -0.3
2,716,650 + CA264_11645 0.52 +0.7
2,716,660 - CA264_11645 0.53 -0.8
2,716,660 - CA264_11645 0.53 -1.5
2,716,759 + CA264_11645 0.58 +0.5
2,716,770 + CA264_11645 0.59 +0.3
2,716,770 + CA264_11645 0.59 +1.0
2,716,814 - CA264_11645 0.62 -0.1
2,716,836 + CA264_11645 0.63 +1.2
2,716,837 - CA264_11645 0.63 +0.3
2,716,837 - CA264_11645 0.63 -1.9
2,716,843 + CA264_11645 0.63 -0.3
2,716,844 - CA264_11645 0.63 -1.5
2,716,845 + CA264_11645 0.63 +1.4
2,716,846 - CA264_11645 0.63 -0.3
2,716,846 - CA264_11645 0.63 -1.5
2,716,867 + CA264_11645 0.65 +0.1
2,716,868 - CA264_11645 0.65 -1.0
2,716,873 - CA264_11645 0.65 -2.3
2,716,875 + CA264_11645 0.65 -0.5
2,716,875 + CA264_11645 0.65 -0.6
2,716,925 + CA264_11645 0.68 +1.0
2,717,044 + CA264_11645 0.74 +0.2
2,717,044 + CA264_11645 0.74 -0.5
2,717,075 - CA264_11645 0.76 -0.3
2,717,118 + CA264_11645 0.78 +0.5
2,717,134 + CA264_11645 0.79 +0.1
2,717,171 - CA264_11645 0.81 -2.8
2,717,193 - CA264_11645 0.83 -0.5
2,717,206 - CA264_11645 0.83 +0.5
2,717,207 + CA264_11645 0.83 +0.2
2,717,222 + CA264_11645 0.84 +1.7
2,717,285 + CA264_11645 0.88 +0.5
2,717,292 - CA264_11645 0.88 -2.4
2,717,319 + CA264_11645 0.90 -0.9
2,717,382 + +0.2
2,717,394 - -0.2
2,717,394 - +0.4
2,717,401 - +0.1
2,717,444 + -0.7
2,717,496 + +1.3
2,717,497 - +0.8
2,717,497 - +0.2
2,717,502 - +0.9
2,717,502 - -2.4
2,717,502 - -0.2
2,717,506 + +1.2
2,717,506 + +1.2
2,717,510 - -0.1
2,717,581 - +0.3
2,717,595 + -0.6
2,717,595 + +1.1
2,717,605 + +0.3
2,717,606 - +0.3
2,717,606 - -0.2
2,717,611 + -0.1
2,717,621 - +0.0
2,717,683 + +0.5
2,717,684 - -0.4
2,717,696 + -0.4
2,717,749 + -0.2
2,717,750 - -1.9
2,717,763 + -1.0
2,717,770 + +0.2
2,717,776 - -1.8
2,717,790 - -0.5
2,717,875 + -0.6
2,717,898 + -0.2
2,717,900 + +0.4
2,717,900 + -1.8
2,717,901 - -0.9
2,717,920 - CA264_11650 0.11 -0.6
2,717,920 - CA264_11650 0.11 -2.5
2,717,921 + CA264_11650 0.11 +1.7
2,717,941 + CA264_11650 0.15 -0.8
2,718,003 + CA264_11650 0.30 -0.0
2,718,066 + CA264_11650 0.44 -0.0
2,718,067 - CA264_11650 0.44 -3.0
2,718,075 + CA264_11650 0.46 +0.1
2,718,075 + CA264_11650 0.46 -2.8
2,718,075 + CA264_11650 0.46 +0.5
2,718,075 + CA264_11650 0.46 +0.7
2,718,076 - CA264_11650 0.46 -0.6
2,718,181 - CA264_11650 0.71 -0.9
2,718,200 + CA264_11650 0.75 +0.5
2,718,219 + CA264_11650 0.79 +0.1
2,718,230 + CA264_11650 0.82 -0.6
2,718,240 - CA264_11650 0.84 +1.0
2,718,240 - CA264_11650 0.84 -1.4
2,718,253 - CA264_11650 0.87 -0.9
2,718,276 + +1.3
2,718,297 - +1.0
2,718,320 + +2.5
2,718,329 - +1.0
2,718,332 + -0.6
2,718,373 - -0.9
2,718,373 - -1.3
2,718,431 + +0.2
2,718,464 + +1.0
2,718,464 + +0.2
2,718,484 + +1.4

Or see this region's nucleotide sequence