Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11130

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11125 and CA264_11130 are separated by 257 nucleotidesCA264_11130 and CA264_11135 are separated by 31 nucleotidesCA264_11135 and CA264_11140 are separated by 266 nucleotides CA264_11125: CA264_11125 - bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase, at 2,568,112 to 2,570,328 _11125 CA264_11130: CA264_11130 - mechanosensitive ion channel protein MscS, at 2,570,586 to 2,571,674 _11130 CA264_11135: CA264_11135 - DUF2179 domain-containing protein, at 2,571,706 to 2,572,305 _11135 CA264_11140: CA264_11140 - 1,4-alpha-glucan branching enzyme, at 2,572,572 to 2,574,899 _11140 Position (kb) 2570 2571 2572Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2569.608 kb on - strand, within CA264_11125at 2569.616 kb on + strand, within CA264_11125at 2569.739 kb on + strand, within CA264_11125at 2569.739 kb on + strand, within CA264_11125at 2569.754 kb on - strand, within CA264_11125at 2569.820 kb on + strand, within CA264_11125at 2569.820 kb on + strand, within CA264_11125at 2570.031 kb on - strand, within CA264_11125at 2570.031 kb on - strand, within CA264_11125at 2570.031 kb on - strand, within CA264_11125at 2570.083 kb on + strand, within CA264_11125at 2570.084 kb on - strand, within CA264_11125at 2570.195 kb on - strandat 2570.214 kb on - strandat 2570.256 kb on + strandat 2570.256 kb on + strandat 2570.257 kb on - strandat 2570.258 kb on + strandat 2570.296 kb on + strandat 2570.297 kb on - strandat 2570.449 kb on - strandat 2570.453 kb on - strandat 2570.453 kb on - strandat 2570.476 kb on - strandat 2570.476 kb on - strandat 2570.491 kb on - strandat 2570.599 kb on + strandat 2570.665 kb on + strandat 2570.675 kb on - strandat 2570.679 kb on - strandat 2570.679 kb on - strandat 2570.801 kb on + strand, within CA264_11130at 2570.824 kb on - strand, within CA264_11130at 2570.877 kb on - strand, within CA264_11130at 2570.877 kb on - strand, within CA264_11130at 2570.936 kb on + strand, within CA264_11130at 2570.936 kb on + strand, within CA264_11130at 2570.937 kb on - strand, within CA264_11130at 2570.952 kb on - strand, within CA264_11130at 2570.965 kb on + strand, within CA264_11130at 2570.965 kb on + strand, within CA264_11130at 2570.966 kb on - strand, within CA264_11130at 2570.966 kb on - strand, within CA264_11130at 2571.012 kb on - strand, within CA264_11130at 2571.021 kb on - strand, within CA264_11130at 2571.021 kb on - strand, within CA264_11130at 2571.033 kb on - strand, within CA264_11130at 2571.121 kb on + strand, within CA264_11130at 2571.124 kb on + strand, within CA264_11130at 2571.258 kb on + strand, within CA264_11130at 2571.258 kb on + strand, within CA264_11130at 2571.259 kb on - strand, within CA264_11130at 2571.309 kb on + strand, within CA264_11130at 2571.310 kb on - strand, within CA264_11130at 2571.372 kb on + strand, within CA264_11130at 2571.373 kb on - strand, within CA264_11130at 2571.373 kb on - strand, within CA264_11130at 2571.373 kb on - strand, within CA264_11130at 2571.388 kb on - strand, within CA264_11130at 2571.438 kb on - strand, within CA264_11130at 2571.566 kb on - strandat 2571.613 kb on + strandat 2571.618 kb on - strandat 2571.699 kb on - strandat 2571.928 kb on + strandat 2571.928 kb on + strand, within CA264_11135at 2571.929 kb on - strand, within CA264_11135at 2572.021 kb on - strand, within CA264_11135at 2572.116 kb on + strand, within CA264_11135at 2572.264 kb on - strandat 2572.264 kb on - strandat 2572.303 kb on + strandat 2572.304 kb on - strandat 2572.304 kb on - strandat 2572.354 kb on - strandat 2572.368 kb on + strandat 2572.386 kb on + strandat 2572.387 kb on - strandat 2572.391 kb on - strandat 2572.392 kb on + strandat 2572.392 kb on + strandat 2572.392 kb on + strandat 2572.393 kb on - strandat 2572.393 kb on - strandat 2572.393 kb on - strandat 2572.448 kb on + strandat 2572.478 kb on + strandat 2572.485 kb on + strandat 2572.503 kb on + strandat 2572.506 kb on - strandat 2572.506 kb on - strandat 2572.510 kb on + strandat 2572.511 kb on - strandat 2572.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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2,569,608 - CA264_11125 0.67 -2.4
2,569,616 + CA264_11125 0.68 -0.2
2,569,739 + CA264_11125 0.73 -0.7
2,569,739 + CA264_11125 0.73 +1.1
2,569,754 - CA264_11125 0.74 -0.3
2,569,820 + CA264_11125 0.77 +0.3
2,569,820 + CA264_11125 0.77 -0.5
2,570,031 - CA264_11125 0.87 -0.0
2,570,031 - CA264_11125 0.87 -1.0
2,570,031 - CA264_11125 0.87 +0.3
2,570,083 + CA264_11125 0.89 +0.8
2,570,084 - CA264_11125 0.89 +0.0
2,570,195 - -0.9
2,570,214 - -0.7
2,570,256 + +1.7
2,570,256 + +0.3
2,570,257 - -0.3
2,570,258 + +0.7
2,570,296 + +0.8
2,570,297 - +0.6
2,570,449 - -1.8
2,570,453 - +0.5
2,570,453 - -1.9
2,570,476 - +0.2
2,570,476 - -0.3
2,570,491 - -0.3
2,570,599 + +1.5
2,570,665 + +1.1
2,570,675 - +0.3
2,570,679 - +0.6
2,570,679 - -0.3
2,570,801 + CA264_11130 0.20 +0.5
2,570,824 - CA264_11130 0.22 -0.4
2,570,877 - CA264_11130 0.27 +0.9
2,570,877 - CA264_11130 0.27 -0.1
2,570,936 + CA264_11130 0.32 +0.4
2,570,936 + CA264_11130 0.32 +0.2
2,570,937 - CA264_11130 0.32 -1.3
2,570,952 - CA264_11130 0.34 -0.1
2,570,965 + CA264_11130 0.35 +0.6
2,570,965 + CA264_11130 0.35 +0.1
2,570,966 - CA264_11130 0.35 -0.9
2,570,966 - CA264_11130 0.35 -0.5
2,571,012 - CA264_11130 0.39 -0.1
2,571,021 - CA264_11130 0.40 -0.3
2,571,021 - CA264_11130 0.40 -0.4
2,571,033 - CA264_11130 0.41 +1.1
2,571,121 + CA264_11130 0.49 +0.5
2,571,124 + CA264_11130 0.49 +1.7
2,571,258 + CA264_11130 0.62 +0.9
2,571,258 + CA264_11130 0.62 +0.7
2,571,259 - CA264_11130 0.62 +0.6
2,571,309 + CA264_11130 0.66 +1.7
2,571,310 - CA264_11130 0.66 +1.0
2,571,372 + CA264_11130 0.72 +0.0
2,571,373 - CA264_11130 0.72 -0.5
2,571,373 - CA264_11130 0.72 +0.1
2,571,373 - CA264_11130 0.72 +4.2
2,571,388 - CA264_11130 0.74 +0.2
2,571,438 - CA264_11130 0.78 +1.2
2,571,566 - -0.5
2,571,613 + -0.4
2,571,618 - +1.6
2,571,699 - +1.1
2,571,928 + +0.9
2,571,928 + CA264_11135 0.37 -1.8
2,571,929 - CA264_11135 0.37 -1.0
2,572,021 - CA264_11135 0.53 -2.9
2,572,116 + CA264_11135 0.68 +0.5
2,572,264 - -1.1
2,572,264 - -0.5
2,572,303 + -2.8
2,572,304 - -0.7
2,572,304 - -0.7
2,572,354 - -0.7
2,572,368 + -2.9
2,572,386 + -1.1
2,572,387 - -0.8
2,572,391 - -0.1
2,572,392 + -2.6
2,572,392 + -2.4
2,572,392 + -2.1
2,572,393 - -1.9
2,572,393 - -0.8
2,572,393 - -2.7
2,572,448 + -2.8
2,572,478 + -0.4
2,572,485 + -3.8
2,572,503 + +0.6
2,572,506 - -1.4
2,572,506 - -0.2
2,572,510 + -0.5
2,572,511 - -2.8
2,572,615 - -0.6

Or see this region's nucleotide sequence