Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10575

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_10565 and CA264_10570 are separated by 61 nucleotidesCA264_10570 and CA264_10575 are separated by 77 nucleotidesCA264_10575 and CA264_10580 are separated by 15 nucleotidesCA264_10580 and CA264_10585 are separated by 306 nucleotides CA264_10565: CA264_10565 - cation transporter, at 2,448,537 to 2,449,445 _10565 CA264_10570: CA264_10570 - hypothetical protein, at 2,449,507 to 2,449,914 _10570 CA264_10575: CA264_10575 - hypothetical protein, at 2,449,992 to 2,450,768 _10575 CA264_10580: CA264_10580 - hypothetical protein, at 2,450,784 to 2,451,182 _10580 CA264_10585: CA264_10585 - hypothetical protein, at 2,451,489 to 2,451,698 _10585 Position (kb) 2449 2450 2451Strain fitness (log2 ratio) -3 -2 -1 0 1at 2449.029 kb on - strand, within CA264_10565at 2449.108 kb on - strand, within CA264_10565at 2449.108 kb on - strand, within CA264_10565at 2449.160 kb on + strand, within CA264_10565at 2449.160 kb on + strand, within CA264_10565at 2449.161 kb on - strand, within CA264_10565at 2449.161 kb on - strand, within CA264_10565at 2449.170 kb on - strand, within CA264_10565at 2449.201 kb on + strand, within CA264_10565at 2449.202 kb on - strand, within CA264_10565at 2449.207 kb on + strand, within CA264_10565at 2449.207 kb on + strand, within CA264_10565at 2449.208 kb on - strand, within CA264_10565at 2449.208 kb on - strand, within CA264_10565at 2449.208 kb on - strand, within CA264_10565at 2449.208 kb on - strand, within CA264_10565at 2449.448 kb on + strandat 2449.448 kb on + strandat 2449.448 kb on + strandat 2449.448 kb on + strandat 2449.451 kb on + strandat 2449.576 kb on - strand, within CA264_10570at 2449.576 kb on - strand, within CA264_10570at 2449.576 kb on - strand, within CA264_10570at 2449.576 kb on - strand, within CA264_10570at 2449.582 kb on + strand, within CA264_10570at 2449.702 kb on + strand, within CA264_10570at 2449.748 kb on - strand, within CA264_10570at 2449.791 kb on + strand, within CA264_10570at 2449.833 kb on + strand, within CA264_10570at 2449.833 kb on + strand, within CA264_10570at 2449.834 kb on - strand, within CA264_10570at 2449.834 kb on - strand, within CA264_10570at 2449.834 kb on - strand, within CA264_10570at 2449.834 kb on - strand, within CA264_10570at 2449.838 kb on - strand, within CA264_10570at 2449.838 kb on - strand, within CA264_10570at 2449.847 kb on - strand, within CA264_10570at 2449.940 kb on + strandat 2449.946 kb on - strandat 2449.997 kb on - strandat 2449.997 kb on - strandat 2449.997 kb on - strandat 2449.999 kb on - strandat 2449.999 kb on - strandat 2450.044 kb on + strandat 2450.242 kb on - strand, within CA264_10575at 2450.339 kb on + strand, within CA264_10575at 2450.595 kb on + strand, within CA264_10575at 2450.596 kb on - strand, within CA264_10575at 2450.756 kb on - strandat 2450.940 kb on - strand, within CA264_10580at 2450.966 kb on + strand, within CA264_10580at 2451.044 kb on + strand, within CA264_10580at 2451.138 kb on - strand, within CA264_10580at 2451.168 kb on + strandat 2451.196 kb on - strandat 2451.199 kb on + strandat 2451.199 kb on + strandat 2451.200 kb on - strandat 2451.278 kb on + strandat 2451.279 kb on - strandat 2451.438 kb on + strandat 2451.438 kb on + strandat 2451.439 kb on - strandat 2451.491 kb on - strandat 2451.522 kb on + strand, within CA264_10585at 2451.534 kb on + strand, within CA264_10585at 2451.535 kb on - strand, within CA264_10585at 2451.643 kb on - strand, within CA264_10585at 2451.688 kb on - strandat 2451.688 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
remove
2,449,029 - CA264_10565 0.54 -2.0
2,449,108 - CA264_10565 0.63 -0.3
2,449,108 - CA264_10565 0.63 -2.0
2,449,160 + CA264_10565 0.69 -1.3
2,449,160 + CA264_10565 0.69 -1.0
2,449,161 - CA264_10565 0.69 -0.1
2,449,161 - CA264_10565 0.69 -1.0
2,449,170 - CA264_10565 0.70 -1.7
2,449,201 + CA264_10565 0.73 -0.3
2,449,202 - CA264_10565 0.73 -1.1
2,449,207 + CA264_10565 0.74 -1.4
2,449,207 + CA264_10565 0.74 -2.6
2,449,208 - CA264_10565 0.74 -1.5
2,449,208 - CA264_10565 0.74 -2.8
2,449,208 - CA264_10565 0.74 -1.3
2,449,208 - CA264_10565 0.74 -1.3
2,449,448 + -1.3
2,449,448 + +1.4
2,449,448 + -1.8
2,449,448 + +0.4
2,449,451 + -1.6
2,449,576 - CA264_10570 0.17 -2.6
2,449,576 - CA264_10570 0.17 -3.5
2,449,576 - CA264_10570 0.17 -1.8
2,449,576 - CA264_10570 0.17 -1.2
2,449,582 + CA264_10570 0.18 -1.3
2,449,702 + CA264_10570 0.48 -1.5
2,449,748 - CA264_10570 0.59 -1.8
2,449,791 + CA264_10570 0.70 -0.6
2,449,833 + CA264_10570 0.80 -0.2
2,449,833 + CA264_10570 0.80 -1.0
2,449,834 - CA264_10570 0.80 -2.4
2,449,834 - CA264_10570 0.80 -3.6
2,449,834 - CA264_10570 0.80 -1.1
2,449,834 - CA264_10570 0.80 -2.4
2,449,838 - CA264_10570 0.81 -3.2
2,449,838 - CA264_10570 0.81 -1.1
2,449,847 - CA264_10570 0.83 -1.2
2,449,940 + -0.4
2,449,946 - -1.0
2,449,997 - -2.1
2,449,997 - -2.2
2,449,997 - -1.5
2,449,999 - -2.9
2,449,999 - -0.4
2,450,044 + -0.2
2,450,242 - CA264_10575 0.32 -0.0
2,450,339 + CA264_10575 0.45 -0.8
2,450,595 + CA264_10575 0.78 -0.7
2,450,596 - CA264_10575 0.78 -0.6
2,450,756 - -1.4
2,450,940 - CA264_10580 0.39 -1.3
2,450,966 + CA264_10580 0.46 -0.7
2,451,044 + CA264_10580 0.65 -0.8
2,451,138 - CA264_10580 0.89 -0.9
2,451,168 + -1.7
2,451,196 - -0.3
2,451,199 + -1.3
2,451,199 + -0.2
2,451,200 - -2.0
2,451,278 + -1.3
2,451,279 - -1.1
2,451,438 + -0.7
2,451,438 + -1.0
2,451,439 - -1.2
2,451,491 - -0.2
2,451,522 + CA264_10585 0.16 +0.4
2,451,534 + CA264_10585 0.21 -1.2
2,451,535 - CA264_10585 0.22 -0.8
2,451,643 - CA264_10585 0.73 -2.0
2,451,688 - -0.7
2,451,688 - -0.9

Or see this region's nucleotide sequence