Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09525

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09520 and CA264_09525 are separated by 214 nucleotidesCA264_09525 and CA264_09530 are separated by 78 nucleotidesCA264_09530 and CA264_09535 are separated by 220 nucleotides CA264_09520: CA264_09520 - hypothetical protein, at 2,223,499 to 2,224,377 _09520 CA264_09525: CA264_09525 - short-chain dehydrogenase, at 2,224,592 to 2,225,329 _09525 CA264_09530: CA264_09530 - cyclic nucleotide-binding protein, at 2,225,408 to 2,225,974 _09530 CA264_09535: CA264_09535 - hypothetical protein, at 2,226,195 to 2,227,379 _09535 Position (kb) 2224 2225 2226Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2223.656 kb on + strand, within CA264_09520at 2223.656 kb on + strand, within CA264_09520at 2223.657 kb on - strand, within CA264_09520at 2223.689 kb on + strand, within CA264_09520at 2223.705 kb on + strand, within CA264_09520at 2223.706 kb on - strand, within CA264_09520at 2223.754 kb on + strand, within CA264_09520at 2223.755 kb on - strand, within CA264_09520at 2223.829 kb on + strand, within CA264_09520at 2223.829 kb on + strand, within CA264_09520at 2223.830 kb on - strand, within CA264_09520at 2223.848 kb on + strand, within CA264_09520at 2223.849 kb on - strand, within CA264_09520at 2223.853 kb on + strand, within CA264_09520at 2223.882 kb on + strand, within CA264_09520at 2223.882 kb on + strand, within CA264_09520at 2223.958 kb on + strand, within CA264_09520at 2223.959 kb on - strand, within CA264_09520at 2223.990 kb on - strand, within CA264_09520at 2224.015 kb on - strand, within CA264_09520at 2224.019 kb on + strand, within CA264_09520at 2224.020 kb on - strand, within CA264_09520at 2224.020 kb on - strand, within CA264_09520at 2224.022 kb on + strand, within CA264_09520at 2224.023 kb on - strand, within CA264_09520at 2224.025 kb on + strand, within CA264_09520at 2224.030 kb on - strand, within CA264_09520at 2224.045 kb on + strand, within CA264_09520at 2224.045 kb on + strand, within CA264_09520at 2224.046 kb on - strand, within CA264_09520at 2224.046 kb on - strand, within CA264_09520at 2224.169 kb on - strand, within CA264_09520at 2224.169 kb on - strand, within CA264_09520at 2224.169 kb on - strand, within CA264_09520at 2224.210 kb on + strand, within CA264_09520at 2224.211 kb on - strand, within CA264_09520at 2224.219 kb on - strand, within CA264_09520at 2224.259 kb on + strand, within CA264_09520at 2224.275 kb on + strand, within CA264_09520at 2224.374 kb on - strandat 2224.374 kb on - strandat 2224.378 kb on + strandat 2224.378 kb on + strandat 2224.443 kb on - strandat 2224.445 kb on - strandat 2224.453 kb on + strandat 2224.454 kb on - strandat 2224.457 kb on + strandat 2224.457 kb on + strandat 2224.458 kb on - strandat 2224.458 kb on - strandat 2224.530 kb on + strandat 2224.531 kb on - strandat 2224.534 kb on + strandat 2224.535 kb on - strandat 2224.543 kb on - strandat 2224.567 kb on + strandat 2224.577 kb on + strandat 2224.577 kb on + strandat 2224.577 kb on + strandat 2224.593 kb on + strandat 2224.679 kb on + strand, within CA264_09525at 2224.679 kb on + strand, within CA264_09525at 2224.680 kb on - strand, within CA264_09525at 2224.680 kb on - strand, within CA264_09525at 2224.763 kb on + strand, within CA264_09525at 2224.768 kb on + strand, within CA264_09525at 2224.769 kb on - strand, within CA264_09525at 2224.792 kb on - strand, within CA264_09525at 2224.809 kb on + strand, within CA264_09525at 2224.810 kb on - strand, within CA264_09525at 2224.863 kb on + strand, within CA264_09525at 2224.864 kb on - strand, within CA264_09525at 2224.905 kb on - strand, within CA264_09525at 2224.917 kb on - strand, within CA264_09525at 2224.917 kb on - strand, within CA264_09525at 2224.917 kb on - strand, within CA264_09525at 2225.046 kb on + strand, within CA264_09525at 2225.047 kb on - strand, within CA264_09525at 2225.077 kb on + strand, within CA264_09525at 2225.077 kb on + strand, within CA264_09525at 2225.078 kb on - strand, within CA264_09525at 2225.078 kb on - strand, within CA264_09525at 2225.081 kb on - strand, within CA264_09525at 2225.150 kb on + strand, within CA264_09525at 2225.151 kb on - strand, within CA264_09525at 2225.311 kb on + strandat 2225.311 kb on + strandat 2225.315 kb on + strandat 2225.344 kb on - strandat 2225.353 kb on - strandat 2225.353 kb on - strandat 2225.427 kb on - strandat 2225.456 kb on + strandat 2225.461 kb on - strandat 2225.470 kb on + strand, within CA264_09530at 2225.472 kb on + strand, within CA264_09530at 2225.472 kb on + strand, within CA264_09530at 2225.473 kb on - strand, within CA264_09530at 2225.473 kb on - strand, within CA264_09530at 2225.477 kb on + strand, within CA264_09530at 2225.495 kb on - strand, within CA264_09530at 2225.523 kb on - strand, within CA264_09530at 2225.527 kb on - strand, within CA264_09530at 2225.533 kb on + strand, within CA264_09530at 2225.622 kb on - strand, within CA264_09530at 2225.674 kb on + strand, within CA264_09530at 2225.693 kb on + strand, within CA264_09530at 2225.693 kb on + strand, within CA264_09530at 2225.693 kb on + strand, within CA264_09530at 2225.694 kb on - strand, within CA264_09530at 2225.717 kb on - strand, within CA264_09530at 2225.717 kb on - strand, within CA264_09530at 2225.734 kb on - strand, within CA264_09530at 2225.744 kb on + strand, within CA264_09530at 2225.796 kb on + strand, within CA264_09530at 2225.796 kb on + strand, within CA264_09530at 2225.796 kb on + strand, within CA264_09530at 2225.796 kb on + strand, within CA264_09530at 2225.797 kb on - strand, within CA264_09530at 2225.800 kb on - strand, within CA264_09530at 2225.849 kb on - strand, within CA264_09530at 2225.869 kb on - strand, within CA264_09530at 2225.955 kb on + strandat 2225.955 kb on + strandat 2225.955 kb on + strandat 2225.956 kb on - strandat 2225.960 kb on + strandat 2225.960 kb on + strandat 2225.961 kb on - strandat 2225.961 kb on - strandat 2225.980 kb on + strandat 2225.981 kb on - strandat 2226.010 kb on + strandat 2226.010 kb on + strandat 2226.011 kb on - strandat 2226.011 kb on - strandat 2226.021 kb on - strandat 2226.028 kb on - strandat 2226.039 kb on - strandat 2226.100 kb on - strandat 2226.100 kb on - strandat 2226.154 kb on - strandat 2226.248 kb on + strandat 2226.250 kb on + strandat 2226.251 kb on - strandat 2226.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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2,223,656 + CA264_09520 0.18 -0.7
2,223,656 + CA264_09520 0.18 +1.9
2,223,657 - CA264_09520 0.18 -0.8
2,223,689 + CA264_09520 0.22 +0.0
2,223,705 + CA264_09520 0.23 +0.8
2,223,706 - CA264_09520 0.24 +1.7
2,223,754 + CA264_09520 0.29 -0.2
2,223,755 - CA264_09520 0.29 -1.3
2,223,829 + CA264_09520 0.38 -0.3
2,223,829 + CA264_09520 0.38 +0.1
2,223,830 - CA264_09520 0.38 +1.7
2,223,848 + CA264_09520 0.40 -0.6
2,223,849 - CA264_09520 0.40 +0.1
2,223,853 + CA264_09520 0.40 -2.3
2,223,882 + CA264_09520 0.44 -0.6
2,223,882 + CA264_09520 0.44 -2.3
2,223,958 + CA264_09520 0.52 -2.4
2,223,959 - CA264_09520 0.52 +0.9
2,223,990 - CA264_09520 0.56 -0.9
2,224,015 - CA264_09520 0.59 -0.0
2,224,019 + CA264_09520 0.59 -2.0
2,224,020 - CA264_09520 0.59 -0.5
2,224,020 - CA264_09520 0.59 +0.8
2,224,022 + CA264_09520 0.59 -2.3
2,224,023 - CA264_09520 0.60 +1.1
2,224,025 + CA264_09520 0.60 -2.4
2,224,030 - CA264_09520 0.60 -2.0
2,224,045 + CA264_09520 0.62 -1.6
2,224,045 + CA264_09520 0.62 -0.7
2,224,046 - CA264_09520 0.62 -0.2
2,224,046 - CA264_09520 0.62 +1.9
2,224,169 - CA264_09520 0.76 -1.3
2,224,169 - CA264_09520 0.76 +0.5
2,224,169 - CA264_09520 0.76 -0.2
2,224,210 + CA264_09520 0.81 -1.9
2,224,211 - CA264_09520 0.81 -0.2
2,224,219 - CA264_09520 0.82 -0.0
2,224,259 + CA264_09520 0.86 -1.2
2,224,275 + CA264_09520 0.88 +1.2
2,224,374 - +0.7
2,224,374 - -0.3
2,224,378 + -1.3
2,224,378 + -0.2
2,224,443 - -0.7
2,224,445 - +0.2
2,224,453 + -1.5
2,224,454 - +1.1
2,224,457 + -0.6
2,224,457 + -1.6
2,224,458 - +0.6
2,224,458 - +0.8
2,224,530 + -0.3
2,224,531 - -0.8
2,224,534 + +1.5
2,224,535 - -1.6
2,224,543 - -0.1
2,224,567 + +0.6
2,224,577 + +0.2
2,224,577 + -1.1
2,224,577 + -0.3
2,224,593 + +0.4
2,224,679 + CA264_09525 0.12 +0.1
2,224,679 + CA264_09525 0.12 +0.4
2,224,680 - CA264_09525 0.12 -2.2
2,224,680 - CA264_09525 0.12 -1.6
2,224,763 + CA264_09525 0.23 -1.8
2,224,768 + CA264_09525 0.24 +0.1
2,224,769 - CA264_09525 0.24 -3.4
2,224,792 - CA264_09525 0.27 -0.6
2,224,809 + CA264_09525 0.29 +0.3
2,224,810 - CA264_09525 0.30 -0.8
2,224,863 + CA264_09525 0.37 -0.2
2,224,864 - CA264_09525 0.37 -0.8
2,224,905 - CA264_09525 0.42 -1.3
2,224,917 - CA264_09525 0.44 -1.1
2,224,917 - CA264_09525 0.44 -1.1
2,224,917 - CA264_09525 0.44 -1.2
2,225,046 + CA264_09525 0.62 +0.5
2,225,047 - CA264_09525 0.62 -1.4
2,225,077 + CA264_09525 0.66 +0.2
2,225,077 + CA264_09525 0.66 +0.5
2,225,078 - CA264_09525 0.66 -1.8
2,225,078 - CA264_09525 0.66 -1.4
2,225,081 - CA264_09525 0.66 -1.1
2,225,150 + CA264_09525 0.76 +1.3
2,225,151 - CA264_09525 0.76 -1.3
2,225,311 + -0.9
2,225,311 + +0.6
2,225,315 + -0.5
2,225,344 - -2.2
2,225,353 - -1.9
2,225,353 - -2.9
2,225,427 - -1.2
2,225,456 + +0.3
2,225,461 - -1.2
2,225,470 + CA264_09530 0.11 -2.3
2,225,472 + CA264_09530 0.11 -0.9
2,225,472 + CA264_09530 0.11 -1.2
2,225,473 - CA264_09530 0.11 -0.6
2,225,473 - CA264_09530 0.11 -0.8
2,225,477 + CA264_09530 0.12 -0.0
2,225,495 - CA264_09530 0.15 -1.2
2,225,523 - CA264_09530 0.20 -0.4
2,225,527 - CA264_09530 0.21 -1.2
2,225,533 + CA264_09530 0.22 -0.8
2,225,622 - CA264_09530 0.38 -1.4
2,225,674 + CA264_09530 0.47 +0.2
2,225,693 + CA264_09530 0.50 -0.6
2,225,693 + CA264_09530 0.50 +0.4
2,225,693 + CA264_09530 0.50 +0.7
2,225,694 - CA264_09530 0.50 +0.4
2,225,717 - CA264_09530 0.54 -0.1
2,225,717 - CA264_09530 0.54 -0.6
2,225,734 - CA264_09530 0.57 -1.2
2,225,744 + CA264_09530 0.59 -0.8
2,225,796 + CA264_09530 0.68 +0.8
2,225,796 + CA264_09530 0.68 +0.4
2,225,796 + CA264_09530 0.68 +0.2
2,225,796 + CA264_09530 0.68 +0.5
2,225,797 - CA264_09530 0.69 -0.4
2,225,800 - CA264_09530 0.69 +0.5
2,225,849 - CA264_09530 0.78 -1.1
2,225,869 - CA264_09530 0.81 -0.8
2,225,955 + +1.3
2,225,955 + -0.7
2,225,955 + +0.3
2,225,956 - +0.1
2,225,960 + -0.3
2,225,960 + +0.6
2,225,961 - -0.1
2,225,961 - -0.3
2,225,980 + +2.0
2,225,981 - -0.0
2,226,010 + +1.1
2,226,010 + -1.2
2,226,011 - -0.6
2,226,011 - -0.8
2,226,021 - -0.9
2,226,028 - +0.4
2,226,039 - -0.2
2,226,100 - -0.1
2,226,100 - +0.9
2,226,154 - -0.5
2,226,248 + +1.1
2,226,250 + +0.4
2,226,251 - -0.3
2,226,251 - -0.4

Or see this region's nucleotide sequence