Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09375

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09370 and CA264_09375 are separated by 90 nucleotidesCA264_09375 and CA264_09380 are separated by 7 nucleotidesCA264_09380 and CA264_09385 are separated by 208 nucleotides CA264_09370: CA264_09370 - amidase, at 2,190,457 to 2,192,037 _09370 CA264_09375: CA264_09375 - transcriptional regulator, at 2,192,128 to 2,192,328 _09375 CA264_09380: CA264_09380 - hypothetical protein, at 2,192,336 to 2,192,737 _09380 CA264_09385: CA264_09385 - zinc-dependent metalloprotease, at 2,192,946 to 2,195,435 _09385 Position (kb) 2192 2193Strain fitness (log2 ratio) -3 -2 -1 0 1at 2191.312 kb on + strand, within CA264_09370at 2191.313 kb on - strand, within CA264_09370at 2191.458 kb on - strand, within CA264_09370at 2191.472 kb on + strand, within CA264_09370at 2191.675 kb on - strand, within CA264_09370at 2191.743 kb on + strand, within CA264_09370at 2191.755 kb on - strand, within CA264_09370at 2191.852 kb on - strand, within CA264_09370at 2191.878 kb on + strand, within CA264_09370at 2191.888 kb on - strandat 2191.888 kb on - strandat 2191.888 kb on - strandat 2191.888 kb on - strandat 2191.891 kb on + strandat 2191.891 kb on + strandat 2191.891 kb on + strandat 2191.892 kb on - strandat 2191.892 kb on - strandat 2191.892 kb on - strandat 2191.933 kb on + strandat 2191.934 kb on - strandat 2191.950 kb on + strandat 2191.958 kb on - strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2192.035 kb on + strandat 2192.129 kb on + strandat 2192.168 kb on - strand, within CA264_09375at 2192.168 kb on - strand, within CA264_09375at 2192.308 kb on + strand, within CA264_09375at 2192.315 kb on - strandat 2192.342 kb on + strandat 2192.343 kb on - strandat 2192.415 kb on + strand, within CA264_09380at 2192.415 kb on + strand, within CA264_09380at 2192.444 kb on + strand, within CA264_09380at 2192.451 kb on + strand, within CA264_09380at 2192.464 kb on + strand, within CA264_09380at 2192.465 kb on - strand, within CA264_09380at 2192.532 kb on + strand, within CA264_09380at 2192.557 kb on - strand, within CA264_09380at 2192.634 kb on + strand, within CA264_09380at 2192.709 kb on - strandat 2192.713 kb on - strandat 2192.713 kb on - strandat 2192.716 kb on - strandat 2192.716 kb on - strandat 2192.724 kb on - strandat 2192.834 kb on + strandat 2192.834 kb on + strandat 2192.839 kb on - strandat 2192.865 kb on - strandat 2192.899 kb on + strandat 2192.900 kb on - strandat 2192.900 kb on - strandat 2192.947 kb on + strandat 2192.948 kb on - strandat 2192.948 kb on - strandat 2192.972 kb on + strandat 2192.999 kb on + strandat 2193.000 kb on - strandat 2193.160 kb on + strandat 2193.202 kb on + strand, within CA264_09385at 2193.203 kb on - strand, within CA264_09385at 2193.228 kb on + strand, within CA264_09385at 2193.228 kb on + strand, within CA264_09385at 2193.228 kb on + strand, within CA264_09385at 2193.229 kb on - strand, within CA264_09385at 2193.278 kb on + strand, within CA264_09385at 2193.279 kb on - strand, within CA264_09385at 2193.280 kb on + strand, within CA264_09385at 2193.281 kb on - strand, within CA264_09385at 2193.285 kb on + strand, within CA264_09385

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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2,191,312 + CA264_09370 0.54 -0.7
2,191,313 - CA264_09370 0.54 -0.9
2,191,458 - CA264_09370 0.63 -0.9
2,191,472 + CA264_09370 0.64 -1.2
2,191,675 - CA264_09370 0.77 -1.3
2,191,743 + CA264_09370 0.81 -1.1
2,191,755 - CA264_09370 0.82 -1.3
2,191,852 - CA264_09370 0.88 -1.4
2,191,878 + CA264_09370 0.90 -2.4
2,191,888 - -3.3
2,191,888 - -0.7
2,191,888 - -2.9
2,191,888 - +1.4
2,191,891 + -2.7
2,191,891 + -1.5
2,191,891 + -2.1
2,191,892 - -1.4
2,191,892 - -1.5
2,191,892 - -1.0
2,191,933 + -0.4
2,191,934 - -0.4
2,191,950 + -1.4
2,191,958 - -2.1
2,191,963 + -1.4
2,191,963 + -0.4
2,191,963 + -0.9
2,191,963 + -1.0
2,191,963 + -1.3
2,191,963 + -1.1
2,191,963 + -1.5
2,191,963 + -1.3
2,191,964 - -1.6
2,191,964 - +0.4
2,191,964 - -1.1
2,191,964 - -1.9
2,191,964 - -2.0
2,191,964 - -2.0
2,191,964 - -0.6
2,191,964 - -0.4
2,191,964 - -1.5
2,192,035 + -2.2
2,192,129 + +0.1
2,192,168 - CA264_09375 0.20 -2.8
2,192,168 - CA264_09375 0.20 -1.2
2,192,308 + CA264_09375 0.90 +0.1
2,192,315 - -0.8
2,192,342 + -0.8
2,192,343 - -1.3
2,192,415 + CA264_09380 0.20 +0.6
2,192,415 + CA264_09380 0.20 -1.5
2,192,444 + CA264_09380 0.27 -1.6
2,192,451 + CA264_09380 0.29 +0.3
2,192,464 + CA264_09380 0.32 -0.5
2,192,465 - CA264_09380 0.32 -1.2
2,192,532 + CA264_09380 0.49 -0.8
2,192,557 - CA264_09380 0.55 -2.1
2,192,634 + CA264_09380 0.74 -0.0
2,192,709 - -0.9
2,192,713 - -1.5
2,192,713 - -0.8
2,192,716 - -1.3
2,192,716 - -2.1
2,192,724 - -1.1
2,192,834 + -0.9
2,192,834 + -1.6
2,192,839 - -1.7
2,192,865 - -1.7
2,192,899 + -2.6
2,192,900 - -1.4
2,192,900 - -0.3
2,192,947 + -0.4
2,192,948 - +1.4
2,192,948 - -2.3
2,192,972 + -0.5
2,192,999 + -0.8
2,193,000 - -1.8
2,193,160 + +1.5
2,193,202 + CA264_09385 0.10 +0.1
2,193,203 - CA264_09385 0.10 -0.6
2,193,228 + CA264_09385 0.11 +0.2
2,193,228 + CA264_09385 0.11 -0.2
2,193,228 + CA264_09385 0.11 +1.6
2,193,229 - CA264_09385 0.11 -1.9
2,193,278 + CA264_09385 0.13 +0.3
2,193,279 - CA264_09385 0.13 -1.9
2,193,280 + CA264_09385 0.13 +0.7
2,193,281 - CA264_09385 0.13 -2.2
2,193,285 + CA264_09385 0.14 -0.8

Or see this region's nucleotide sequence