Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09255

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09250 and CA264_09255 are separated by 85 nucleotidesCA264_09255 and CA264_09260 are separated by 101 nucleotides CA264_09250: CA264_09250 - hemolysin, at 2,163,575 to 2,164,624 _09250 CA264_09255: CA264_09255 - isocitrate lyase, at 2,164,710 to 2,165,990 _09255 CA264_09260: CA264_09260 - malate synthase A, at 2,166,092 to 2,167,690 _09260 Position (kb) 2164 2165 2166Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2163.724 kb on + strand, within CA264_09250at 2163.725 kb on - strand, within CA264_09250at 2163.736 kb on - strand, within CA264_09250at 2163.736 kb on - strand, within CA264_09250at 2163.757 kb on - strand, within CA264_09250at 2163.760 kb on + strand, within CA264_09250at 2163.760 kb on + strand, within CA264_09250at 2163.769 kb on + strand, within CA264_09250at 2163.836 kb on + strand, within CA264_09250at 2163.941 kb on - strand, within CA264_09250at 2163.941 kb on - strand, within CA264_09250at 2163.968 kb on + strand, within CA264_09250at 2163.969 kb on - strand, within CA264_09250at 2164.097 kb on - strand, within CA264_09250at 2164.133 kb on - strand, within CA264_09250at 2164.299 kb on - strand, within CA264_09250at 2164.300 kb on + strand, within CA264_09250at 2164.377 kb on + strand, within CA264_09250at 2164.378 kb on - strand, within CA264_09250at 2164.378 kb on - strand, within CA264_09250at 2164.610 kb on + strandat 2164.622 kb on + strandat 2164.645 kb on + strandat 2164.645 kb on + strandat 2164.645 kb on + strandat 2164.646 kb on - strandat 2164.646 kb on - strandat 2164.674 kb on - strandat 2164.674 kb on - strandat 2164.678 kb on + strandat 2164.678 kb on + strandat 2164.679 kb on - strandat 2164.692 kb on + strandat 2164.701 kb on + strandat 2164.702 kb on - strandat 2164.702 kb on - strandat 2164.704 kb on + strandat 2164.704 kb on + strandat 2164.711 kb on + strandat 2164.733 kb on + strandat 2164.740 kb on + strandat 2164.741 kb on - strandat 2164.741 kb on - strandat 2165.028 kb on + strand, within CA264_09255at 2165.029 kb on - strand, within CA264_09255at 2165.033 kb on + strand, within CA264_09255at 2165.046 kb on - strand, within CA264_09255at 2165.064 kb on - strand, within CA264_09255at 2165.097 kb on + strand, within CA264_09255at 2165.176 kb on + strand, within CA264_09255at 2165.176 kb on + strand, within CA264_09255at 2165.257 kb on - strand, within CA264_09255at 2165.259 kb on - strand, within CA264_09255at 2165.466 kb on + strand, within CA264_09255at 2165.523 kb on - strand, within CA264_09255at 2165.566 kb on + strand, within CA264_09255at 2165.567 kb on - strand, within CA264_09255at 2165.567 kb on - strand, within CA264_09255at 2165.598 kb on + strand, within CA264_09255at 2165.598 kb on + strand, within CA264_09255at 2165.599 kb on - strand, within CA264_09255at 2165.599 kb on - strand, within CA264_09255at 2165.683 kb on + strand, within CA264_09255at 2165.684 kb on - strand, within CA264_09255at 2165.716 kb on - strand, within CA264_09255at 2165.734 kb on + strand, within CA264_09255at 2165.734 kb on + strand, within CA264_09255at 2165.735 kb on - strand, within CA264_09255at 2165.793 kb on + strand, within CA264_09255at 2165.806 kb on + strand, within CA264_09255at 2165.862 kb on - strand, within CA264_09255at 2165.862 kb on - strand, within CA264_09255at 2165.863 kb on + strandat 2165.868 kb on + strandat 2165.869 kb on - strandat 2165.892 kb on + strandat 2165.893 kb on - strandat 2165.910 kb on - strandat 2165.910 kb on - strandat 2165.910 kb on - strandat 2165.911 kb on + strandat 2165.911 kb on + strandat 2165.912 kb on - strandat 2165.912 kb on - strandat 2165.996 kb on + strandat 2165.996 kb on + strandat 2165.997 kb on - strandat 2165.997 kb on - strandat 2166.000 kb on + strandat 2166.008 kb on - strandat 2166.102 kb on + strandat 2166.102 kb on + strandat 2166.102 kb on + strandat 2166.189 kb on + strandat 2166.189 kb on + strandat 2166.190 kb on - strandat 2166.190 kb on - strandat 2166.224 kb on - strandat 2166.244 kb on + strandat 2166.324 kb on - strand, within CA264_09260at 2166.324 kb on - strand, within CA264_09260at 2166.414 kb on + strand, within CA264_09260at 2166.414 kb on + strand, within CA264_09260at 2166.415 kb on - strand, within CA264_09260at 2166.415 kb on - strand, within CA264_09260at 2166.418 kb on + strand, within CA264_09260at 2166.418 kb on + strand, within CA264_09260at 2166.418 kb on + strand, within CA264_09260at 2166.419 kb on - strand, within CA264_09260at 2166.419 kb on - strand, within CA264_09260at 2166.503 kb on + strand, within CA264_09260at 2166.503 kb on + strand, within CA264_09260at 2166.770 kb on - strand, within CA264_09260at 2166.770 kb on - strand, within CA264_09260at 2166.770 kb on - strand, within CA264_09260at 2166.772 kb on - strand, within CA264_09260at 2166.782 kb on - strand, within CA264_09260at 2166.800 kb on + strand, within CA264_09260at 2166.801 kb on - strand, within CA264_09260at 2166.824 kb on + strand, within CA264_09260at 2166.825 kb on - strand, within CA264_09260at 2166.863 kb on + strand, within CA264_09260at 2166.899 kb on - strand, within CA264_09260

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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2,163,724 + CA264_09250 0.14 +0.1
2,163,725 - CA264_09250 0.14 -0.1
2,163,736 - CA264_09250 0.15 -0.8
2,163,736 - CA264_09250 0.15 -0.2
2,163,757 - CA264_09250 0.17 -1.2
2,163,760 + CA264_09250 0.18 -0.8
2,163,760 + CA264_09250 0.18 +2.4
2,163,769 + CA264_09250 0.18 +0.0
2,163,836 + CA264_09250 0.25 -1.0
2,163,941 - CA264_09250 0.35 -0.6
2,163,941 - CA264_09250 0.35 -0.3
2,163,968 + CA264_09250 0.37 -1.9
2,163,969 - CA264_09250 0.38 +0.6
2,164,097 - CA264_09250 0.50 -1.5
2,164,133 - CA264_09250 0.53 -1.2
2,164,299 - CA264_09250 0.69 +0.7
2,164,300 + CA264_09250 0.69 -0.7
2,164,377 + CA264_09250 0.76 -0.9
2,164,378 - CA264_09250 0.76 +0.1
2,164,378 - CA264_09250 0.76 -0.9
2,164,610 + -1.1
2,164,622 + -1.7
2,164,645 + +0.8
2,164,645 + -1.5
2,164,645 + -1.4
2,164,646 - +0.5
2,164,646 - -1.4
2,164,674 - -0.3
2,164,674 - -0.7
2,164,678 + -0.2
2,164,678 + +0.5
2,164,679 - -0.2
2,164,692 + +0.1
2,164,701 + -0.6
2,164,702 - -1.0
2,164,702 - -0.8
2,164,704 + +0.1
2,164,704 + -0.3
2,164,711 + -0.1
2,164,733 + -1.2
2,164,740 + -1.6
2,164,741 - -0.7
2,164,741 - -1.2
2,165,028 + CA264_09255 0.25 -0.1
2,165,029 - CA264_09255 0.25 -2.0
2,165,033 + CA264_09255 0.25 -0.1
2,165,046 - CA264_09255 0.26 -1.4
2,165,064 - CA264_09255 0.28 -1.1
2,165,097 + CA264_09255 0.30 -0.3
2,165,176 + CA264_09255 0.36 -0.2
2,165,176 + CA264_09255 0.36 -0.1
2,165,257 - CA264_09255 0.43 +0.2
2,165,259 - CA264_09255 0.43 -1.8
2,165,466 + CA264_09255 0.59 -0.4
2,165,523 - CA264_09255 0.63 -1.5
2,165,566 + CA264_09255 0.67 +0.9
2,165,567 - CA264_09255 0.67 -1.1
2,165,567 - CA264_09255 0.67 -1.3
2,165,598 + CA264_09255 0.69 +0.1
2,165,598 + CA264_09255 0.69 +0.1
2,165,599 - CA264_09255 0.69 -2.1
2,165,599 - CA264_09255 0.69 -0.5
2,165,683 + CA264_09255 0.76 +0.1
2,165,684 - CA264_09255 0.76 -2.1
2,165,716 - CA264_09255 0.79 +0.1
2,165,734 + CA264_09255 0.80 +1.8
2,165,734 + CA264_09255 0.80 +0.4
2,165,735 - CA264_09255 0.80 -1.9
2,165,793 + CA264_09255 0.85 +1.1
2,165,806 + CA264_09255 0.86 -0.1
2,165,862 - CA264_09255 0.90 -0.8
2,165,862 - CA264_09255 0.90 -0.9
2,165,863 + -1.7
2,165,868 + +1.0
2,165,869 - -0.9
2,165,892 + -0.2
2,165,893 - -1.7
2,165,910 - -2.2
2,165,910 - -1.6
2,165,910 - -2.3
2,165,911 + +1.2
2,165,911 + +0.3
2,165,912 - -1.8
2,165,912 - -1.5
2,165,996 + +1.4
2,165,996 + -0.2
2,165,997 - -0.3
2,165,997 - -1.7
2,166,000 + -0.9
2,166,008 - -0.5
2,166,102 + +0.5
2,166,102 + +0.6
2,166,102 + +1.8
2,166,189 + +0.6
2,166,189 + +0.6
2,166,190 - -1.4
2,166,190 - -0.8
2,166,224 - +0.3
2,166,244 + +0.6
2,166,324 - CA264_09260 0.15 -0.7
2,166,324 - CA264_09260 0.15 -0.9
2,166,414 + CA264_09260 0.20 -0.0
2,166,414 + CA264_09260 0.20 +0.2
2,166,415 - CA264_09260 0.20 +0.5
2,166,415 - CA264_09260 0.20 -1.2
2,166,418 + CA264_09260 0.20 +0.4
2,166,418 + CA264_09260 0.20 +2.5
2,166,418 + CA264_09260 0.20 +0.1
2,166,419 - CA264_09260 0.20 -1.2
2,166,419 - CA264_09260 0.20 -0.7
2,166,503 + CA264_09260 0.26 +0.1
2,166,503 + CA264_09260 0.26 +1.7
2,166,770 - CA264_09260 0.42 -1.7
2,166,770 - CA264_09260 0.42 +0.8
2,166,770 - CA264_09260 0.42 -2.9
2,166,772 - CA264_09260 0.43 -0.9
2,166,782 - CA264_09260 0.43 -1.3
2,166,800 + CA264_09260 0.44 +0.9
2,166,801 - CA264_09260 0.44 -0.4
2,166,824 + CA264_09260 0.46 +0.5
2,166,825 - CA264_09260 0.46 -0.1
2,166,863 + CA264_09260 0.48 +2.2
2,166,899 - CA264_09260 0.50 -2.9

Or see this region's nucleotide sequence