Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09120

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09115 and CA264_09120 are separated by 105 nucleotidesCA264_09120 and CA264_09125 are separated by 239 nucleotides CA264_09115: CA264_09115 - hypothetical protein, at 2,134,830 to 2,135,507 _09115 CA264_09120: CA264_09120 - galactose-1-epimerase, at 2,135,613 to 2,136,797 _09120 CA264_09125: CA264_09125 - glucose/galactose MFS transporter, at 2,137,037 to 2,138,455 _09125 Position (kb) 2135 2136 2137Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2134.727 kb on + strandat 2134.815 kb on + strandat 2134.843 kb on + strandat 2134.863 kb on - strandat 2134.871 kb on + strandat 2134.872 kb on - strandat 2134.896 kb on + strandat 2134.896 kb on + strandat 2134.897 kb on - strandat 2134.905 kb on + strand, within CA264_09115at 2135.041 kb on - strand, within CA264_09115at 2135.194 kb on + strand, within CA264_09115at 2135.195 kb on - strand, within CA264_09115at 2135.195 kb on - strand, within CA264_09115at 2135.195 kb on - strand, within CA264_09115at 2135.253 kb on + strand, within CA264_09115at 2135.254 kb on - strand, within CA264_09115at 2135.313 kb on + strand, within CA264_09115at 2135.511 kb on + strandat 2135.515 kb on + strandat 2135.516 kb on - strandat 2135.516 kb on - strandat 2135.571 kb on + strandat 2135.576 kb on + strandat 2135.595 kb on - strandat 2135.612 kb on + strandat 2135.674 kb on + strandat 2135.723 kb on + strandat 2135.742 kb on - strand, within CA264_09120at 2135.805 kb on + strand, within CA264_09120at 2135.806 kb on - strand, within CA264_09120at 2135.844 kb on - strand, within CA264_09120at 2135.844 kb on - strand, within CA264_09120at 2135.850 kb on + strand, within CA264_09120at 2135.937 kb on + strand, within CA264_09120at 2136.029 kb on + strand, within CA264_09120at 2136.030 kb on - strand, within CA264_09120at 2136.030 kb on - strand, within CA264_09120at 2136.030 kb on - strand, within CA264_09120at 2136.030 kb on - strand, within CA264_09120at 2136.030 kb on - strand, within CA264_09120at 2136.071 kb on + strand, within CA264_09120at 2136.141 kb on + strand, within CA264_09120at 2136.141 kb on + strand, within CA264_09120at 2136.141 kb on + strand, within CA264_09120at 2136.142 kb on - strand, within CA264_09120at 2136.234 kb on + strand, within CA264_09120at 2136.285 kb on + strand, within CA264_09120at 2136.291 kb on - strand, within CA264_09120at 2136.354 kb on + strand, within CA264_09120at 2136.354 kb on + strand, within CA264_09120at 2136.354 kb on + strand, within CA264_09120at 2136.354 kb on + strand, within CA264_09120at 2136.355 kb on - strand, within CA264_09120at 2136.355 kb on - strand, within CA264_09120at 2136.355 kb on - strand, within CA264_09120at 2136.355 kb on - strand, within CA264_09120at 2136.356 kb on + strand, within CA264_09120at 2136.357 kb on - strand, within CA264_09120at 2136.357 kb on - strand, within CA264_09120at 2136.403 kb on + strand, within CA264_09120at 2136.477 kb on + strand, within CA264_09120at 2136.486 kb on - strand, within CA264_09120at 2136.537 kb on + strand, within CA264_09120at 2136.537 kb on + strand, within CA264_09120at 2136.597 kb on + strand, within CA264_09120at 2136.648 kb on + strand, within CA264_09120at 2136.722 kb on + strandat 2136.766 kb on - strandat 2137.009 kb on - strandat 2137.011 kb on + strandat 2137.011 kb on + strandat 2137.019 kb on + strandat 2137.100 kb on - strandat 2137.183 kb on - strand, within CA264_09125at 2137.231 kb on - strand, within CA264_09125at 2137.257 kb on - strand, within CA264_09125at 2137.277 kb on + strand, within CA264_09125at 2137.278 kb on - strand, within CA264_09125at 2137.327 kb on + strand, within CA264_09125at 2137.328 kb on - strand, within CA264_09125at 2137.402 kb on + strand, within CA264_09125at 2137.402 kb on + strand, within CA264_09125at 2137.402 kb on + strand, within CA264_09125at 2137.403 kb on - strand, within CA264_09125at 2137.403 kb on - strand, within CA264_09125at 2137.406 kb on + strand, within CA264_09125at 2137.407 kb on - strand, within CA264_09125at 2137.433 kb on - strand, within CA264_09125at 2137.433 kb on - strand, within CA264_09125at 2137.434 kb on + strand, within CA264_09125at 2137.478 kb on + strand, within CA264_09125at 2137.479 kb on - strand, within CA264_09125at 2137.479 kb on - strand, within CA264_09125at 2137.482 kb on + strand, within CA264_09125at 2137.483 kb on - strand, within CA264_09125at 2137.553 kb on - strand, within CA264_09125at 2137.640 kb on + strand, within CA264_09125at 2137.684 kb on + strand, within CA264_09125at 2137.780 kb on + strand, within CA264_09125at 2137.780 kb on + strand, within CA264_09125

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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2,134,727 + -0.6
2,134,815 + -2.6
2,134,843 + -3.3
2,134,863 - -2.4
2,134,871 + -1.5
2,134,872 - -0.8
2,134,896 + -3.9
2,134,896 + -1.9
2,134,897 - +1.3
2,134,905 + CA264_09115 0.11 -2.0
2,135,041 - CA264_09115 0.31 +0.9
2,135,194 + CA264_09115 0.54 -0.9
2,135,195 - CA264_09115 0.54 -2.0
2,135,195 - CA264_09115 0.54 -1.0
2,135,195 - CA264_09115 0.54 -0.9
2,135,253 + CA264_09115 0.62 -2.1
2,135,254 - CA264_09115 0.63 -1.4
2,135,313 + CA264_09115 0.71 -1.0
2,135,511 + -2.7
2,135,515 + -2.3
2,135,516 - -2.1
2,135,516 - -2.7
2,135,571 + -1.6
2,135,576 + -2.6
2,135,595 - -1.8
2,135,612 + -1.9
2,135,674 + -1.5
2,135,723 + -0.1
2,135,742 - CA264_09120 0.11 -0.2
2,135,805 + CA264_09120 0.16 -1.4
2,135,806 - CA264_09120 0.16 -2.6
2,135,844 - CA264_09120 0.19 -0.7
2,135,844 - CA264_09120 0.19 -0.1
2,135,850 + CA264_09120 0.20 -0.6
2,135,937 + CA264_09120 0.27 +0.7
2,136,029 + CA264_09120 0.35 -1.9
2,136,030 - CA264_09120 0.35 +0.6
2,136,030 - CA264_09120 0.35 +0.0
2,136,030 - CA264_09120 0.35 +0.4
2,136,030 - CA264_09120 0.35 -1.8
2,136,030 - CA264_09120 0.35 +1.0
2,136,071 + CA264_09120 0.39 -1.5
2,136,141 + CA264_09120 0.45 -1.5
2,136,141 + CA264_09120 0.45 -0.4
2,136,141 + CA264_09120 0.45 -1.6
2,136,142 - CA264_09120 0.45 +0.4
2,136,234 + CA264_09120 0.52 -1.6
2,136,285 + CA264_09120 0.57 -1.1
2,136,291 - CA264_09120 0.57 -0.1
2,136,354 + CA264_09120 0.63 -1.3
2,136,354 + CA264_09120 0.63 -0.0
2,136,354 + CA264_09120 0.63 +1.3
2,136,354 + CA264_09120 0.63 -1.2
2,136,355 - CA264_09120 0.63 -0.8
2,136,355 - CA264_09120 0.63 -0.1
2,136,355 - CA264_09120 0.63 -0.1
2,136,355 - CA264_09120 0.63 -0.2
2,136,356 + CA264_09120 0.63 -2.3
2,136,357 - CA264_09120 0.63 -1.6
2,136,357 - CA264_09120 0.63 +0.1
2,136,403 + CA264_09120 0.67 +0.1
2,136,477 + CA264_09120 0.73 +0.9
2,136,486 - CA264_09120 0.74 +0.2
2,136,537 + CA264_09120 0.78 -2.0
2,136,537 + CA264_09120 0.78 -0.8
2,136,597 + CA264_09120 0.83 -1.4
2,136,648 + CA264_09120 0.87 -0.9
2,136,722 + -1.9
2,136,766 - -0.7
2,137,009 - -0.4
2,137,011 + -2.6
2,137,011 + -2.5
2,137,019 + -0.2
2,137,100 - -1.7
2,137,183 - CA264_09125 0.10 +0.6
2,137,231 - CA264_09125 0.14 -0.4
2,137,257 - CA264_09125 0.16 -0.9
2,137,277 + CA264_09125 0.17 -0.2
2,137,278 - CA264_09125 0.17 -1.5
2,137,327 + CA264_09125 0.20 +1.0
2,137,328 - CA264_09125 0.21 -0.5
2,137,402 + CA264_09125 0.26 -0.1
2,137,402 + CA264_09125 0.26 -0.8
2,137,402 + CA264_09125 0.26 -1.0
2,137,403 - CA264_09125 0.26 -0.6
2,137,403 - CA264_09125 0.26 -0.6
2,137,406 + CA264_09125 0.26 +0.2
2,137,407 - CA264_09125 0.26 -0.1
2,137,433 - CA264_09125 0.28 -0.8
2,137,433 - CA264_09125 0.28 +0.3
2,137,434 + CA264_09125 0.28 -0.4
2,137,478 + CA264_09125 0.31 -0.1
2,137,479 - CA264_09125 0.31 -0.6
2,137,479 - CA264_09125 0.31 +0.9
2,137,482 + CA264_09125 0.31 -0.3
2,137,483 - CA264_09125 0.31 -0.4
2,137,553 - CA264_09125 0.36 -0.9
2,137,640 + CA264_09125 0.42 -1.8
2,137,684 + CA264_09125 0.46 -3.0
2,137,780 + CA264_09125 0.52 -1.3
2,137,780 + CA264_09125 0.52 -0.5

Or see this region's nucleotide sequence