Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08705

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_08700 and CA264_08705 are separated by 13 nucleotidesCA264_08705 and CA264_08710 are separated by 555 nucleotides CA264_08700: CA264_08700 - SusC/RagA family TonB-linked outer membrane protein, at 2,019,652 to 2,022,876 _08700 CA264_08705: CA264_08705 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 2,022,890 to 2,024,308 _08705 CA264_08710: CA264_08710 - sugar kinase, at 2,024,864 to 2,026,114 _08710 Position (kb) 2022 2023 2024 2025Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2021.981 kb on - strand, within CA264_08700at 2022.016 kb on - strand, within CA264_08700at 2022.065 kb on + strand, within CA264_08700at 2022.066 kb on - strand, within CA264_08700at 2022.102 kb on + strand, within CA264_08700at 2022.127 kb on + strand, within CA264_08700at 2022.127 kb on + strand, within CA264_08700at 2022.127 kb on + strand, within CA264_08700at 2022.128 kb on - strand, within CA264_08700at 2022.128 kb on - strand, within CA264_08700at 2022.150 kb on - strand, within CA264_08700at 2022.173 kb on - strand, within CA264_08700at 2022.173 kb on - strand, within CA264_08700at 2022.173 kb on - strand, within CA264_08700at 2022.196 kb on + strand, within CA264_08700at 2022.197 kb on - strand, within CA264_08700at 2022.199 kb on - strand, within CA264_08700at 2022.199 kb on - strand, within CA264_08700at 2022.253 kb on + strand, within CA264_08700at 2022.253 kb on + strand, within CA264_08700at 2022.295 kb on - strand, within CA264_08700at 2022.306 kb on + strand, within CA264_08700at 2022.306 kb on + strand, within CA264_08700at 2022.378 kb on + strand, within CA264_08700at 2022.491 kb on + strand, within CA264_08700at 2022.499 kb on - strand, within CA264_08700at 2022.503 kb on - strand, within CA264_08700at 2022.551 kb on + strand, within CA264_08700at 2022.559 kb on + strandat 2022.559 kb on + strandat 2022.559 kb on + strandat 2022.560 kb on - strandat 2022.560 kb on - strandat 2022.607 kb on + strandat 2022.874 kb on + strandat 2022.875 kb on - strandat 2022.875 kb on - strandat 2022.875 kb on - strandat 2022.878 kb on + strandat 2022.879 kb on - strandat 2022.879 kb on - strandat 2022.916 kb on - strandat 2022.941 kb on - strandat 2022.941 kb on - strandat 2022.960 kb on + strandat 2022.961 kb on - strandat 2022.961 kb on - strandat 2023.091 kb on + strand, within CA264_08705at 2023.092 kb on - strand, within CA264_08705at 2023.110 kb on - strand, within CA264_08705at 2023.111 kb on + strand, within CA264_08705at 2023.112 kb on - strand, within CA264_08705at 2023.121 kb on + strand, within CA264_08705at 2023.133 kb on + strand, within CA264_08705at 2023.133 kb on + strand, within CA264_08705at 2023.134 kb on - strand, within CA264_08705at 2023.136 kb on - strand, within CA264_08705at 2023.139 kb on + strand, within CA264_08705at 2023.139 kb on + strand, within CA264_08705at 2023.140 kb on - strand, within CA264_08705at 2023.140 kb on - strand, within CA264_08705at 2023.142 kb on + strand, within CA264_08705at 2023.142 kb on + strand, within CA264_08705at 2023.142 kb on + strand, within CA264_08705at 2023.143 kb on - strand, within CA264_08705at 2023.143 kb on - strand, within CA264_08705at 2023.144 kb on + strand, within CA264_08705at 2023.145 kb on - strand, within CA264_08705at 2023.213 kb on - strand, within CA264_08705at 2023.250 kb on + strand, within CA264_08705at 2023.293 kb on - strand, within CA264_08705at 2023.334 kb on + strand, within CA264_08705at 2023.334 kb on + strand, within CA264_08705at 2023.335 kb on - strand, within CA264_08705at 2023.335 kb on - strand, within CA264_08705at 2023.335 kb on - strand, within CA264_08705at 2023.355 kb on + strand, within CA264_08705at 2023.356 kb on - strand, within CA264_08705at 2023.356 kb on - strand, within CA264_08705at 2023.426 kb on + strand, within CA264_08705at 2023.427 kb on - strand, within CA264_08705at 2023.427 kb on - strand, within CA264_08705at 2023.447 kb on + strand, within CA264_08705at 2023.448 kb on - strand, within CA264_08705at 2023.468 kb on + strand, within CA264_08705at 2023.469 kb on - strand, within CA264_08705at 2023.568 kb on - strand, within CA264_08705at 2023.620 kb on - strand, within CA264_08705at 2023.658 kb on + strand, within CA264_08705at 2023.685 kb on + strand, within CA264_08705at 2023.686 kb on - strand, within CA264_08705at 2023.732 kb on + strand, within CA264_08705at 2023.749 kb on - strand, within CA264_08705at 2023.804 kb on + strand, within CA264_08705at 2023.819 kb on + strand, within CA264_08705at 2023.819 kb on + strand, within CA264_08705at 2023.820 kb on - strand, within CA264_08705at 2023.949 kb on + strand, within CA264_08705at 2023.952 kb on + strand, within CA264_08705at 2023.952 kb on + strand, within CA264_08705at 2023.953 kb on - strand, within CA264_08705at 2024.042 kb on + strand, within CA264_08705at 2024.043 kb on - strand, within CA264_08705at 2024.318 kb on - strandat 2024.342 kb on - strandat 2024.348 kb on + strandat 2024.349 kb on - strandat 2024.376 kb on - strandat 2024.379 kb on - strandat 2024.404 kb on - strandat 2024.404 kb on - strandat 2024.463 kb on - strandat 2024.498 kb on - strandat 2024.656 kb on - strandat 2024.656 kb on - strandat 2024.721 kb on + strandat 2024.859 kb on - strandat 2024.946 kb on + strandat 2024.965 kb on - strandat 2025.037 kb on - strand, within CA264_08710at 2025.127 kb on + strand, within CA264_08710at 2025.166 kb on + strand, within CA264_08710at 2025.167 kb on - strand, within CA264_08710at 2025.225 kb on - strand, within CA264_08710at 2025.230 kb on + strand, within CA264_08710at 2025.231 kb on - strand, within CA264_08710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
remove
2,021,981 - CA264_08700 0.72 +1.2
2,022,016 - CA264_08700 0.73 -1.0
2,022,065 + CA264_08700 0.75 -1.0
2,022,066 - CA264_08700 0.75 -0.5
2,022,102 + CA264_08700 0.76 -2.9
2,022,127 + CA264_08700 0.77 -1.8
2,022,127 + CA264_08700 0.77 +0.0
2,022,127 + CA264_08700 0.77 -3.2
2,022,128 - CA264_08700 0.77 -3.5
2,022,128 - CA264_08700 0.77 -1.2
2,022,150 - CA264_08700 0.77 -2.7
2,022,173 - CA264_08700 0.78 -2.3
2,022,173 - CA264_08700 0.78 -1.7
2,022,173 - CA264_08700 0.78 -1.5
2,022,196 + CA264_08700 0.79 -1.8
2,022,197 - CA264_08700 0.79 -2.9
2,022,199 - CA264_08700 0.79 -1.3
2,022,199 - CA264_08700 0.79 -1.8
2,022,253 + CA264_08700 0.81 -2.2
2,022,253 + CA264_08700 0.81 -0.9
2,022,295 - CA264_08700 0.82 -0.5
2,022,306 + CA264_08700 0.82 -0.9
2,022,306 + CA264_08700 0.82 -0.5
2,022,378 + CA264_08700 0.85 -1.3
2,022,491 + CA264_08700 0.88 -2.1
2,022,499 - CA264_08700 0.88 -1.0
2,022,503 - CA264_08700 0.88 +0.5
2,022,551 + CA264_08700 0.90 -1.9
2,022,559 + -2.5
2,022,559 + -0.1
2,022,559 + -0.1
2,022,560 - -2.6
2,022,560 - -1.5
2,022,607 + -1.0
2,022,874 + +0.1
2,022,875 - +1.8
2,022,875 - -2.0
2,022,875 - -0.1
2,022,878 + -0.4
2,022,879 - -1.3
2,022,879 - -0.7
2,022,916 - +0.5
2,022,941 - -0.9
2,022,941 - -2.2
2,022,960 + -2.1
2,022,961 - -2.1
2,022,961 - -1.1
2,023,091 + CA264_08705 0.14 -1.0
2,023,092 - CA264_08705 0.14 -0.4
2,023,110 - CA264_08705 0.16 -1.1
2,023,111 + CA264_08705 0.16 -1.5
2,023,112 - CA264_08705 0.16 -0.5
2,023,121 + CA264_08705 0.16 +0.3
2,023,133 + CA264_08705 0.17 -2.8
2,023,133 + CA264_08705 0.17 +1.2
2,023,134 - CA264_08705 0.17 -0.5
2,023,136 - CA264_08705 0.17 -2.1
2,023,139 + CA264_08705 0.18 +1.7
2,023,139 + CA264_08705 0.18 -2.6
2,023,140 - CA264_08705 0.18 -1.6
2,023,140 - CA264_08705 0.18 +0.9
2,023,142 + CA264_08705 0.18 -1.6
2,023,142 + CA264_08705 0.18 -2.1
2,023,142 + CA264_08705 0.18 -0.0
2,023,143 - CA264_08705 0.18 -0.3
2,023,143 - CA264_08705 0.18 -0.1
2,023,144 + CA264_08705 0.18 -2.9
2,023,145 - CA264_08705 0.18 +0.5
2,023,213 - CA264_08705 0.23 -1.1
2,023,250 + CA264_08705 0.25 -1.2
2,023,293 - CA264_08705 0.28 -1.1
2,023,334 + CA264_08705 0.31 -2.8
2,023,334 + CA264_08705 0.31 -0.5
2,023,335 - CA264_08705 0.31 -1.1
2,023,335 - CA264_08705 0.31 -0.1
2,023,335 - CA264_08705 0.31 -1.1
2,023,355 + CA264_08705 0.33 -1.5
2,023,356 - CA264_08705 0.33 -0.6
2,023,356 - CA264_08705 0.33 -0.6
2,023,426 + CA264_08705 0.38 -0.9
2,023,427 - CA264_08705 0.38 -0.5
2,023,427 - CA264_08705 0.38 -0.6
2,023,447 + CA264_08705 0.39 -2.2
2,023,448 - CA264_08705 0.39 -0.5
2,023,468 + CA264_08705 0.41 +0.5
2,023,469 - CA264_08705 0.41 -1.4
2,023,568 - CA264_08705 0.48 -1.9
2,023,620 - CA264_08705 0.51 -0.4
2,023,658 + CA264_08705 0.54 -1.1
2,023,685 + CA264_08705 0.56 -1.9
2,023,686 - CA264_08705 0.56 +0.7
2,023,732 + CA264_08705 0.59 -2.1
2,023,749 - CA264_08705 0.61 -0.5
2,023,804 + CA264_08705 0.64 -0.4
2,023,819 + CA264_08705 0.65 -2.2
2,023,819 + CA264_08705 0.65 -1.8
2,023,820 - CA264_08705 0.66 -0.7
2,023,949 + CA264_08705 0.75 -1.5
2,023,952 + CA264_08705 0.75 -1.9
2,023,952 + CA264_08705 0.75 +0.9
2,023,953 - CA264_08705 0.75 -0.4
2,024,042 + CA264_08705 0.81 -2.2
2,024,043 - CA264_08705 0.81 +0.1
2,024,318 - +0.4
2,024,342 - -1.6
2,024,348 + -3.0
2,024,349 - -0.3
2,024,376 - -0.4
2,024,379 - -2.1
2,024,404 - -1.4
2,024,404 - -1.5
2,024,463 - -2.9
2,024,498 - -1.4
2,024,656 - -3.0
2,024,656 - -1.6
2,024,721 + +0.3
2,024,859 - -0.9
2,024,946 + -2.2
2,024,965 - -2.6
2,025,037 - CA264_08710 0.14 -1.5
2,025,127 + CA264_08710 0.21 -2.4
2,025,166 + CA264_08710 0.24 -1.0
2,025,167 - CA264_08710 0.24 -2.1
2,025,225 - CA264_08710 0.29 -2.7
2,025,230 + CA264_08710 0.29 -2.4
2,025,231 - CA264_08710 0.29 -1.9

Or see this region's nucleotide sequence