Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08520

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08515 and CA264_08520 are separated by 67 nucleotidesCA264_08520 and CA264_08525 overlap by 17 nucleotides CA264_08515: CA264_08515 - long-chain fatty acid--CoA ligase, at 1,978,552 to 1,980,351 _08515 CA264_08520: CA264_08520 - amino acid aminotransferase, at 1,980,419 to 1,981,279 _08520 CA264_08525: CA264_08525 - aminopeptidase, at 1,981,263 to 1,982,420 _08525 Position (kb) 1980 1981 1982Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1979.433 kb on + strand, within CA264_08515at 1979.485 kb on - strand, within CA264_08515at 1979.507 kb on - strand, within CA264_08515at 1979.513 kb on + strand, within CA264_08515at 1979.514 kb on - strand, within CA264_08515at 1979.577 kb on - strand, within CA264_08515at 1979.622 kb on - strand, within CA264_08515at 1979.662 kb on + strand, within CA264_08515at 1979.662 kb on + strand, within CA264_08515at 1979.818 kb on + strand, within CA264_08515at 1979.821 kb on + strand, within CA264_08515at 1979.821 kb on + strand, within CA264_08515at 1979.822 kb on - strand, within CA264_08515at 1979.850 kb on - strand, within CA264_08515at 1979.959 kb on + strand, within CA264_08515at 1979.960 kb on - strand, within CA264_08515at 1979.960 kb on - strand, within CA264_08515at 1980.019 kb on - strand, within CA264_08515at 1980.134 kb on + strand, within CA264_08515at 1980.135 kb on - strand, within CA264_08515at 1980.181 kb on + strandat 1980.181 kb on + strandat 1980.184 kb on - strandat 1980.184 kb on - strandat 1980.204 kb on - strandat 1980.204 kb on - strandat 1980.235 kb on + strandat 1980.236 kb on - strandat 1980.309 kb on + strandat 1980.353 kb on + strandat 1980.354 kb on - strandat 1980.354 kb on - strandat 1980.354 kb on - strandat 1980.354 kb on - strandat 1980.355 kb on + strandat 1980.365 kb on + strandat 1980.366 kb on - strandat 1980.368 kb on - strandat 1980.392 kb on + strandat 1980.404 kb on + strandat 1980.405 kb on - strandat 1980.408 kb on + strandat 1980.408 kb on + strandat 1980.409 kb on - strandat 1980.444 kb on + strandat 1980.465 kb on - strandat 1980.512 kb on + strand, within CA264_08520at 1980.560 kb on - strand, within CA264_08520at 1980.589 kb on - strand, within CA264_08520at 1980.591 kb on - strand, within CA264_08520at 1980.591 kb on - strand, within CA264_08520at 1980.591 kb on - strand, within CA264_08520at 1980.591 kb on - strand, within CA264_08520at 1980.591 kb on - strand, within CA264_08520at 1980.591 kb on - strand, within CA264_08520at 1980.620 kb on + strand, within CA264_08520at 1980.665 kb on + strand, within CA264_08520at 1980.829 kb on - strand, within CA264_08520at 1980.829 kb on - strand, within CA264_08520at 1981.041 kb on + strand, within CA264_08520at 1981.042 kb on - strand, within CA264_08520at 1981.063 kb on + strand, within CA264_08520at 1981.159 kb on + strand, within CA264_08520at 1981.164 kb on + strand, within CA264_08520at 1981.179 kb on + strand, within CA264_08520at 1981.252 kb on - strandat 1981.476 kb on - strand, within CA264_08525at 1981.608 kb on + strand, within CA264_08525at 1981.609 kb on - strand, within CA264_08525at 1981.609 kb on - strand, within CA264_08525at 1981.629 kb on + strand, within CA264_08525at 1981.629 kb on + strand, within CA264_08525at 1981.638 kb on - strand, within CA264_08525at 1981.679 kb on - strand, within CA264_08525at 1981.765 kb on + strand, within CA264_08525at 1981.817 kb on + strand, within CA264_08525at 1981.902 kb on + strand, within CA264_08525at 1981.902 kb on + strand, within CA264_08525at 1981.903 kb on - strand, within CA264_08525at 1981.903 kb on - strand, within CA264_08525at 1981.903 kb on - strand, within CA264_08525at 1981.935 kb on - strand, within CA264_08525at 1982.067 kb on + strand, within CA264_08525at 1982.139 kb on + strand, within CA264_08525at 1982.140 kb on - strand, within CA264_08525at 1982.143 kb on + strand, within CA264_08525at 1982.144 kb on - strand, within CA264_08525at 1982.144 kb on - strand, within CA264_08525at 1982.144 kb on - strand, within CA264_08525at 1982.279 kb on + strand, within CA264_08525

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,979,433 + CA264_08515 0.49 -1.2
1,979,485 - CA264_08515 0.52 -0.2
1,979,507 - CA264_08515 0.53 +0.1
1,979,513 + CA264_08515 0.53 -0.9
1,979,514 - CA264_08515 0.53 -1.1
1,979,577 - CA264_08515 0.57 +1.2
1,979,622 - CA264_08515 0.59 -1.2
1,979,662 + CA264_08515 0.62 -1.7
1,979,662 + CA264_08515 0.62 +0.4
1,979,818 + CA264_08515 0.70 +0.1
1,979,821 + CA264_08515 0.70 -1.2
1,979,821 + CA264_08515 0.70 -0.8
1,979,822 - CA264_08515 0.71 -0.1
1,979,850 - CA264_08515 0.72 +2.1
1,979,959 + CA264_08515 0.78 -3.0
1,979,960 - CA264_08515 0.78 +0.8
1,979,960 - CA264_08515 0.78 +0.3
1,980,019 - CA264_08515 0.81 -1.3
1,980,134 + CA264_08515 0.88 +0.5
1,980,135 - CA264_08515 0.88 +0.6
1,980,181 + -0.9
1,980,181 + -2.7
1,980,184 - +0.5
1,980,184 - +0.3
1,980,204 - +0.3
1,980,204 - +0.7
1,980,235 + -1.8
1,980,236 - -1.3
1,980,309 + -0.2
1,980,353 + -0.7
1,980,354 - -0.2
1,980,354 - +0.1
1,980,354 - +0.3
1,980,354 - -0.1
1,980,355 + -1.8
1,980,365 + -0.6
1,980,366 - -0.3
1,980,368 - -1.3
1,980,392 + +0.9
1,980,404 + -1.3
1,980,405 - -0.3
1,980,408 + +0.5
1,980,408 + +0.9
1,980,409 - -1.2
1,980,444 + +1.1
1,980,465 - +0.5
1,980,512 + CA264_08520 0.11 -2.0
1,980,560 - CA264_08520 0.16 -2.6
1,980,589 - CA264_08520 0.20 +0.5
1,980,591 - CA264_08520 0.20 -3.1
1,980,591 - CA264_08520 0.20 -1.0
1,980,591 - CA264_08520 0.20 +0.6
1,980,591 - CA264_08520 0.20 -0.8
1,980,591 - CA264_08520 0.20 +0.9
1,980,591 - CA264_08520 0.20 -0.2
1,980,620 + CA264_08520 0.23 +0.0
1,980,665 + CA264_08520 0.29 -0.0
1,980,829 - CA264_08520 0.48 -0.2
1,980,829 - CA264_08520 0.48 -2.9
1,981,041 + CA264_08520 0.72 +1.4
1,981,042 - CA264_08520 0.72 -2.0
1,981,063 + CA264_08520 0.75 +0.7
1,981,159 + CA264_08520 0.86 -1.3
1,981,164 + CA264_08520 0.87 +0.5
1,981,179 + CA264_08520 0.88 +0.1
1,981,252 - -1.8
1,981,476 - CA264_08525 0.18 +0.0
1,981,608 + CA264_08525 0.30 +0.6
1,981,609 - CA264_08525 0.30 -1.2
1,981,609 - CA264_08525 0.30 +1.2
1,981,629 + CA264_08525 0.32 +0.5
1,981,629 + CA264_08525 0.32 +2.0
1,981,638 - CA264_08525 0.32 +0.7
1,981,679 - CA264_08525 0.36 -0.0
1,981,765 + CA264_08525 0.43 +0.4
1,981,817 + CA264_08525 0.48 +0.1
1,981,902 + CA264_08525 0.55 -1.6
1,981,902 + CA264_08525 0.55 +1.6
1,981,903 - CA264_08525 0.55 +0.2
1,981,903 - CA264_08525 0.55 -0.9
1,981,903 - CA264_08525 0.55 -0.5
1,981,935 - CA264_08525 0.58 +0.1
1,982,067 + CA264_08525 0.69 +0.4
1,982,139 + CA264_08525 0.76 +0.6
1,982,140 - CA264_08525 0.76 -3.9
1,982,143 + CA264_08525 0.76 +0.3
1,982,144 - CA264_08525 0.76 +0.3
1,982,144 - CA264_08525 0.76 -1.5
1,982,144 - CA264_08525 0.76 -0.4
1,982,279 + CA264_08525 0.88 -0.4

Or see this region's nucleotide sequence