Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07815

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07805 and CA264_07810 are separated by 231 nucleotidesCA264_07810 and CA264_07815 are separated by 159 nucleotidesCA264_07815 and CA264_07820 are separated by 127 nucleotides CA264_07805: CA264_07805 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,807,681 to 1,808,985 _07805 CA264_07810: CA264_07810 - hypothetical protein, at 1,809,217 to 1,809,714 _07810 CA264_07815: CA264_07815 - hypothetical protein, at 1,809,874 to 1,810,335 _07815 CA264_07820: CA264_07820 - hypothetical protein, at 1,810,463 to 1,811,539 _07820 Position (kb) 1809 1810 1811Strain fitness (log2 ratio) -3 -2 -1 0 1at 1808.983 kb on + strandat 1809.138 kb on - strandat 1809.138 kb on - strandat 1809.264 kb on + strandat 1809.264 kb on + strandat 1809.265 kb on - strandat 1809.270 kb on + strand, within CA264_07810at 1809.270 kb on + strand, within CA264_07810at 1809.270 kb on + strand, within CA264_07810at 1809.270 kb on + strand, within CA264_07810at 1809.270 kb on + strand, within CA264_07810at 1809.331 kb on + strand, within CA264_07810at 1809.331 kb on + strand, within CA264_07810at 1809.332 kb on - strand, within CA264_07810at 1809.461 kb on + strand, within CA264_07810at 1809.469 kb on + strand, within CA264_07810at 1809.472 kb on - strand, within CA264_07810at 1809.490 kb on + strand, within CA264_07810at 1809.490 kb on + strand, within CA264_07810at 1809.491 kb on - strand, within CA264_07810at 1809.504 kb on - strand, within CA264_07810at 1809.525 kb on + strand, within CA264_07810at 1809.534 kb on - strand, within CA264_07810at 1809.627 kb on + strand, within CA264_07810at 1809.628 kb on - strand, within CA264_07810at 1809.630 kb on + strand, within CA264_07810at 1809.630 kb on + strand, within CA264_07810at 1809.651 kb on + strand, within CA264_07810at 1809.652 kb on - strand, within CA264_07810at 1809.652 kb on - strand, within CA264_07810at 1809.735 kb on + strandat 1809.762 kb on - strandat 1809.793 kb on + strandat 1809.823 kb on - strandat 1809.828 kb on - strandat 1809.830 kb on - strandat 1809.830 kb on - strandat 1809.859 kb on - strandat 1809.859 kb on - strandat 1809.859 kb on - strandat 1809.866 kb on - strandat 1809.866 kb on - strandat 1809.867 kb on + strandat 1809.902 kb on + strandat 1809.903 kb on - strandat 1809.919 kb on - strandat 1810.016 kb on - strand, within CA264_07815at 1810.083 kb on + strand, within CA264_07815at 1810.087 kb on + strand, within CA264_07815at 1810.088 kb on - strand, within CA264_07815at 1810.096 kb on - strand, within CA264_07815at 1810.107 kb on + strand, within CA264_07815at 1810.107 kb on + strand, within CA264_07815at 1810.117 kb on + strand, within CA264_07815at 1810.117 kb on + strand, within CA264_07815at 1810.141 kb on - strand, within CA264_07815at 1810.253 kb on + strand, within CA264_07815at 1810.269 kb on - strand, within CA264_07815at 1810.269 kb on - strand, within CA264_07815at 1810.275 kb on - strand, within CA264_07815at 1810.329 kb on + strandat 1810.329 kb on + strandat 1810.330 kb on - strandat 1810.330 kb on - strandat 1810.396 kb on + strandat 1810.396 kb on + strandat 1810.397 kb on - strandat 1810.402 kb on - strandat 1810.405 kb on + strandat 1810.406 kb on - strandat 1810.406 kb on - strandat 1810.431 kb on - strandat 1810.453 kb on - strandat 1810.474 kb on + strandat 1810.474 kb on + strandat 1810.483 kb on - strandat 1810.494 kb on + strandat 1810.511 kb on + strandat 1810.537 kb on + strandat 1810.539 kb on + strandat 1810.551 kb on - strandat 1810.585 kb on + strand, within CA264_07820at 1810.588 kb on - strand, within CA264_07820at 1810.588 kb on - strand, within CA264_07820at 1810.741 kb on - strand, within CA264_07820at 1810.767 kb on - strand, within CA264_07820at 1810.806 kb on + strand, within CA264_07820at 1810.809 kb on + strand, within CA264_07820at 1810.810 kb on - strand, within CA264_07820at 1810.810 kb on - strand, within CA264_07820at 1810.815 kb on + strand, within CA264_07820at 1810.816 kb on - strand, within CA264_07820at 1810.816 kb on - strand, within CA264_07820at 1810.816 kb on - strand, within CA264_07820at 1810.819 kb on + strand, within CA264_07820at 1810.859 kb on + strand, within CA264_07820at 1810.860 kb on - strand, within CA264_07820at 1810.860 kb on - strand, within CA264_07820at 1810.876 kb on + strand, within CA264_07820at 1810.886 kb on + strand, within CA264_07820at 1810.902 kb on + strand, within CA264_07820at 1810.902 kb on + strand, within CA264_07820at 1810.903 kb on - strand, within CA264_07820at 1810.940 kb on + strand, within CA264_07820at 1810.941 kb on - strand, within CA264_07820at 1810.955 kb on + strand, within CA264_07820at 1811.058 kb on + strand, within CA264_07820at 1811.058 kb on + strand, within CA264_07820at 1811.059 kb on - strand, within CA264_07820at 1811.061 kb on + strand, within CA264_07820at 1811.078 kb on - strand, within CA264_07820at 1811.088 kb on + strand, within CA264_07820at 1811.093 kb on + strand, within CA264_07820at 1811.093 kb on + strand, within CA264_07820at 1811.093 kb on + strand, within CA264_07820at 1811.094 kb on - strand, within CA264_07820at 1811.094 kb on - strand, within CA264_07820at 1811.108 kb on + strand, within CA264_07820at 1811.110 kb on + strand, within CA264_07820at 1811.111 kb on - strand, within CA264_07820at 1811.144 kb on + strand, within CA264_07820at 1811.145 kb on - strand, within CA264_07820at 1811.163 kb on - strand, within CA264_07820at 1811.167 kb on - strand, within CA264_07820at 1811.174 kb on + strand, within CA264_07820at 1811.176 kb on + strand, within CA264_07820at 1811.266 kb on + strand, within CA264_07820at 1811.266 kb on + strand, within CA264_07820

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,808,983 + -2.6
1,809,138 - -0.5
1,809,138 - -0.1
1,809,264 + +0.8
1,809,264 + -2.7
1,809,265 - -0.3
1,809,270 + CA264_07810 0.11 -0.2
1,809,270 + CA264_07810 0.11 -3.2
1,809,270 + CA264_07810 0.11 -0.7
1,809,270 + CA264_07810 0.11 -0.7
1,809,270 + CA264_07810 0.11 -0.1
1,809,331 + CA264_07810 0.23 -1.9
1,809,331 + CA264_07810 0.23 -1.6
1,809,332 - CA264_07810 0.23 -0.6
1,809,461 + CA264_07810 0.49 +0.5
1,809,469 + CA264_07810 0.51 +1.0
1,809,472 - CA264_07810 0.51 -1.0
1,809,490 + CA264_07810 0.55 -0.7
1,809,490 + CA264_07810 0.55 -0.1
1,809,491 - CA264_07810 0.55 +0.2
1,809,504 - CA264_07810 0.58 +1.3
1,809,525 + CA264_07810 0.62 +0.1
1,809,534 - CA264_07810 0.64 -1.3
1,809,627 + CA264_07810 0.82 +0.1
1,809,628 - CA264_07810 0.83 -0.0
1,809,630 + CA264_07810 0.83 +0.9
1,809,630 + CA264_07810 0.83 -0.8
1,809,651 + CA264_07810 0.87 -1.2
1,809,652 - CA264_07810 0.87 -0.6
1,809,652 - CA264_07810 0.87 -1.0
1,809,735 + +0.1
1,809,762 - +0.3
1,809,793 + +0.4
1,809,823 - -1.9
1,809,828 - +0.0
1,809,830 - -0.3
1,809,830 - -1.5
1,809,859 - +1.1
1,809,859 - -1.1
1,809,859 - -0.7
1,809,866 - -1.0
1,809,866 - -0.3
1,809,867 + +0.3
1,809,902 + +0.1
1,809,903 - -1.3
1,809,919 - -0.7
1,810,016 - CA264_07815 0.31 -0.2
1,810,083 + CA264_07815 0.45 -1.7
1,810,087 + CA264_07815 0.46 +0.0
1,810,088 - CA264_07815 0.46 -1.6
1,810,096 - CA264_07815 0.48 -0.4
1,810,107 + CA264_07815 0.50 +0.8
1,810,107 + CA264_07815 0.50 +0.2
1,810,117 + CA264_07815 0.53 +0.4
1,810,117 + CA264_07815 0.53 +0.1
1,810,141 - CA264_07815 0.58 +0.5
1,810,253 + CA264_07815 0.82 +0.5
1,810,269 - CA264_07815 0.85 -0.1
1,810,269 - CA264_07815 0.85 +0.2
1,810,275 - CA264_07815 0.87 -0.7
1,810,329 + +0.8
1,810,329 + -0.5
1,810,330 - +1.2
1,810,330 - -0.5
1,810,396 + +0.3
1,810,396 + -2.0
1,810,397 - -0.0
1,810,402 - -2.4
1,810,405 + +0.2
1,810,406 - +0.0
1,810,406 - +0.1
1,810,431 - -0.6
1,810,453 - -1.8
1,810,474 + +0.5
1,810,474 + +0.9
1,810,483 - +0.9
1,810,494 + +0.8
1,810,511 + -0.2
1,810,537 + +0.8
1,810,539 + +1.6
1,810,551 - -0.5
1,810,585 + CA264_07820 0.11 +1.1
1,810,588 - CA264_07820 0.12 +0.1
1,810,588 - CA264_07820 0.12 +0.4
1,810,741 - CA264_07820 0.26 -0.6
1,810,767 - CA264_07820 0.28 +0.1
1,810,806 + CA264_07820 0.32 +0.9
1,810,809 + CA264_07820 0.32 +0.5
1,810,810 - CA264_07820 0.32 -0.1
1,810,810 - CA264_07820 0.32 +1.3
1,810,815 + CA264_07820 0.33 +0.5
1,810,816 - CA264_07820 0.33 +0.4
1,810,816 - CA264_07820 0.33 +0.2
1,810,816 - CA264_07820 0.33 -0.5
1,810,819 + CA264_07820 0.33 +0.1
1,810,859 + CA264_07820 0.37 +0.2
1,810,860 - CA264_07820 0.37 +0.5
1,810,860 - CA264_07820 0.37 -0.1
1,810,876 + CA264_07820 0.38 +0.7
1,810,886 + CA264_07820 0.39 +0.6
1,810,902 + CA264_07820 0.41 +0.8
1,810,902 + CA264_07820 0.41 +0.2
1,810,903 - CA264_07820 0.41 -1.3
1,810,940 + CA264_07820 0.44 -0.3
1,810,941 - CA264_07820 0.44 +0.8
1,810,955 + CA264_07820 0.46 -0.5
1,811,058 + CA264_07820 0.55 -0.4
1,811,058 + CA264_07820 0.55 +1.4
1,811,059 - CA264_07820 0.55 +0.3
1,811,061 + CA264_07820 0.56 +0.6
1,811,078 - CA264_07820 0.57 +0.5
1,811,088 + CA264_07820 0.58 +1.1
1,811,093 + CA264_07820 0.58 -1.1
1,811,093 + CA264_07820 0.58 +0.0
1,811,093 + CA264_07820 0.58 +0.8
1,811,094 - CA264_07820 0.59 +0.0
1,811,094 - CA264_07820 0.59 -0.1
1,811,108 + CA264_07820 0.60 +1.2
1,811,110 + CA264_07820 0.60 +0.2
1,811,111 - CA264_07820 0.60 -1.7
1,811,144 + CA264_07820 0.63 -0.0
1,811,145 - CA264_07820 0.63 +0.2
1,811,163 - CA264_07820 0.65 +0.4
1,811,167 - CA264_07820 0.65 +0.7
1,811,174 + CA264_07820 0.66 -0.3
1,811,176 + CA264_07820 0.66 +0.1
1,811,266 + CA264_07820 0.75 +0.5
1,811,266 + CA264_07820 0.75 +0.0

Or see this region's nucleotide sequence