Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07795

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07790 and CA264_07795 are separated by 309 nucleotidesCA264_07795 and CA264_07800 are separated by 173 nucleotidesCA264_07800 and CA264_07805 are separated by 3 nucleotides CA264_07790: CA264_07790 - ankryin, at 1,802,651 to 1,804,297 _07790 CA264_07795: CA264_07795 - ATP-dependent DNA helicase, at 1,804,607 to 1,806,844 _07795 CA264_07800: CA264_07800 - hypothetical protein, at 1,807,018 to 1,807,677 _07800 CA264_07805: CA264_07805 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,807,681 to 1,808,985 _07805 Position (kb) 1804 1805 1806 1807Strain fitness (log2 ratio) -1 0 1 2 3 4at 1803.627 kb on + strand, within CA264_07790at 1803.672 kb on + strand, within CA264_07790at 1803.672 kb on + strand, within CA264_07790at 1803.672 kb on + strand, within CA264_07790at 1803.675 kb on + strand, within CA264_07790at 1803.675 kb on + strand, within CA264_07790at 1803.675 kb on + strand, within CA264_07790at 1803.675 kb on + strand, within CA264_07790at 1803.676 kb on - strand, within CA264_07790at 1803.676 kb on - strand, within CA264_07790at 1803.676 kb on - strand, within CA264_07790at 1803.676 kb on - strand, within CA264_07790at 1803.676 kb on - strand, within CA264_07790at 1803.855 kb on + strand, within CA264_07790at 1803.856 kb on - strand, within CA264_07790at 1803.856 kb on - strand, within CA264_07790at 1803.926 kb on + strand, within CA264_07790at 1803.943 kb on - strand, within CA264_07790at 1803.985 kb on - strand, within CA264_07790at 1804.054 kb on + strand, within CA264_07790at 1804.055 kb on - strand, within CA264_07790at 1804.059 kb on + strand, within CA264_07790at 1804.059 kb on + strand, within CA264_07790at 1804.059 kb on + strand, within CA264_07790at 1804.059 kb on + strand, within CA264_07790at 1804.060 kb on - strand, within CA264_07790at 1804.062 kb on + strand, within CA264_07790at 1804.062 kb on + strand, within CA264_07790at 1804.062 kb on + strand, within CA264_07790at 1804.062 kb on + strand, within CA264_07790at 1804.062 kb on + strand, within CA264_07790at 1804.063 kb on - strand, within CA264_07790at 1804.063 kb on - strand, within CA264_07790at 1804.063 kb on - strand, within CA264_07790at 1804.321 kb on + strandat 1804.323 kb on + strandat 1804.324 kb on - strandat 1804.345 kb on + strandat 1804.345 kb on + strandat 1804.428 kb on + strandat 1804.429 kb on - strandat 1804.433 kb on + strandat 1804.440 kb on + strandat 1804.442 kb on + strandat 1804.443 kb on - strandat 1804.618 kb on - strandat 1804.618 kb on - strandat 1806.834 kb on + strandat 1806.843 kb on - strandat 1806.854 kb on - strandat 1806.867 kb on + strandat 1806.875 kb on - strandat 1806.909 kb on + strandat 1806.910 kb on - strandat 1806.910 kb on - strandat 1806.958 kb on - strandat 1806.959 kb on + strandat 1806.960 kb on - strandat 1806.971 kb on - strandat 1807.026 kb on + strandat 1807.026 kb on + strandat 1807.026 kb on + strandat 1807.026 kb on + strandat 1807.027 kb on - strandat 1807.027 kb on - strandat 1807.038 kb on + strandat 1807.064 kb on - strandat 1807.093 kb on + strand, within CA264_07800at 1807.093 kb on + strand, within CA264_07800at 1807.093 kb on + strand, within CA264_07800at 1807.095 kb on + strand, within CA264_07800at 1807.283 kb on - strand, within CA264_07800at 1807.283 kb on - strand, within CA264_07800at 1807.336 kb on - strand, within CA264_07800at 1807.448 kb on - strand, within CA264_07800at 1807.473 kb on + strand, within CA264_07800at 1807.540 kb on + strand, within CA264_07800at 1807.540 kb on + strand, within CA264_07800at 1807.541 kb on - strand, within CA264_07800

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,803,627 + CA264_07790 0.59 +0.9
1,803,672 + CA264_07790 0.62 +0.7
1,803,672 + CA264_07790 0.62 +0.3
1,803,672 + CA264_07790 0.62 +0.2
1,803,675 + CA264_07790 0.62 -0.2
1,803,675 + CA264_07790 0.62 +2.3
1,803,675 + CA264_07790 0.62 +0.4
1,803,675 + CA264_07790 0.62 +0.9
1,803,676 - CA264_07790 0.62 -0.8
1,803,676 - CA264_07790 0.62 -0.3
1,803,676 - CA264_07790 0.62 -0.5
1,803,676 - CA264_07790 0.62 -0.7
1,803,676 - CA264_07790 0.62 +1.3
1,803,855 + CA264_07790 0.73 -0.0
1,803,856 - CA264_07790 0.73 +1.0
1,803,856 - CA264_07790 0.73 +3.9
1,803,926 + CA264_07790 0.77 -0.0
1,803,943 - CA264_07790 0.78 +0.2
1,803,985 - CA264_07790 0.81 -1.6
1,804,054 + CA264_07790 0.85 +0.6
1,804,055 - CA264_07790 0.85 -0.5
1,804,059 + CA264_07790 0.85 +0.7
1,804,059 + CA264_07790 0.85 -0.7
1,804,059 + CA264_07790 0.85 -0.4
1,804,059 + CA264_07790 0.85 +0.6
1,804,060 - CA264_07790 0.86 -0.4
1,804,062 + CA264_07790 0.86 +0.7
1,804,062 + CA264_07790 0.86 +1.2
1,804,062 + CA264_07790 0.86 +0.6
1,804,062 + CA264_07790 0.86 +0.5
1,804,062 + CA264_07790 0.86 +0.5
1,804,063 - CA264_07790 0.86 -0.2
1,804,063 - CA264_07790 0.86 -0.0
1,804,063 - CA264_07790 0.86 -0.6
1,804,321 + +0.3
1,804,323 + +0.7
1,804,324 - -0.7
1,804,345 + +0.3
1,804,345 + +1.8
1,804,428 + +0.5
1,804,429 - -0.5
1,804,433 + -1.5
1,804,440 + -0.2
1,804,442 + +1.6
1,804,443 - -0.7
1,804,618 - -0.8
1,804,618 - +0.1
1,806,834 + +1.0
1,806,843 - +0.7
1,806,854 - +0.1
1,806,867 + +0.6
1,806,875 - +0.7
1,806,909 + +2.8
1,806,910 - +0.5
1,806,910 - +1.0
1,806,958 - +0.1
1,806,959 + +1.2
1,806,960 - +0.7
1,806,971 - -1.1
1,807,026 + +1.0
1,807,026 + +1.2
1,807,026 + +0.5
1,807,026 + +0.5
1,807,027 - +0.3
1,807,027 - +1.3
1,807,038 + +1.5
1,807,064 - +0.7
1,807,093 + CA264_07800 0.11 +1.0
1,807,093 + CA264_07800 0.11 +1.2
1,807,093 + CA264_07800 0.11 +0.2
1,807,095 + CA264_07800 0.12 +1.0
1,807,283 - CA264_07800 0.40 +2.5
1,807,283 - CA264_07800 0.40 -0.5
1,807,336 - CA264_07800 0.48 +1.2
1,807,448 - CA264_07800 0.65 +2.3
1,807,473 + CA264_07800 0.69 +0.3
1,807,540 + CA264_07800 0.79 +1.3
1,807,540 + CA264_07800 0.79 +0.3
1,807,541 - CA264_07800 0.79 +0.7

Or see this region's nucleotide sequence