Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07770

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07765 and CA264_07770 are separated by 104 nucleotidesCA264_07770 and CA264_07775 are separated by 1 nucleotidesCA264_07775 and CA264_07780 are separated by 128 nucleotidesCA264_07780 and CA264_07785 are separated by 45 nucleotides CA264_07765: CA264_07765 - hypothetical protein, at 1,798,571 to 1,799,407 _07765 CA264_07770: CA264_07770 - hypothetical protein, at 1,799,512 to 1,800,936 _07770 CA264_07775: CA264_07775 - transcriptional regulator, at 1,800,938 to 1,801,303 _07775 CA264_07780: CA264_07780 - hypothetical protein, at 1,801,432 to 1,801,839 _07780 CA264_07785: CA264_07785 - hypothetical protein, at 1,801,885 to 1,802,451 _07785 Position (kb) 1799 1800 1801Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1798.555 kb on - strandat 1798.556 kb on + strandat 1798.590 kb on + strandat 1798.590 kb on + strandat 1798.611 kb on + strandat 1798.650 kb on + strandat 1798.650 kb on + strandat 1798.651 kb on - strandat 1798.692 kb on - strand, within CA264_07765at 1798.700 kb on + strand, within CA264_07765at 1798.735 kb on + strand, within CA264_07765at 1798.814 kb on + strand, within CA264_07765at 1798.814 kb on + strand, within CA264_07765at 1798.815 kb on - strand, within CA264_07765at 1798.874 kb on - strand, within CA264_07765at 1798.874 kb on - strand, within CA264_07765at 1798.928 kb on + strand, within CA264_07765at 1798.957 kb on + strand, within CA264_07765at 1798.983 kb on + strand, within CA264_07765at 1799.015 kb on + strand, within CA264_07765at 1799.117 kb on + strand, within CA264_07765at 1799.165 kb on + strand, within CA264_07765at 1799.239 kb on - strand, within CA264_07765at 1799.263 kb on + strand, within CA264_07765at 1799.264 kb on - strand, within CA264_07765at 1799.399 kb on + strandat 1799.400 kb on - strandat 1799.401 kb on + strandat 1799.438 kb on - strandat 1799.447 kb on - strandat 1799.513 kb on + strandat 1799.566 kb on + strandat 1799.758 kb on - strand, within CA264_07770at 1799.833 kb on + strand, within CA264_07770at 1799.834 kb on - strand, within CA264_07770at 1799.848 kb on + strand, within CA264_07770at 1799.955 kb on - strand, within CA264_07770at 1799.959 kb on + strand, within CA264_07770at 1799.960 kb on - strand, within CA264_07770at 1800.000 kb on + strand, within CA264_07770at 1800.000 kb on + strand, within CA264_07770at 1800.001 kb on - strand, within CA264_07770at 1800.001 kb on - strand, within CA264_07770at 1800.101 kb on - strand, within CA264_07770at 1800.128 kb on + strand, within CA264_07770at 1800.257 kb on + strand, within CA264_07770at 1800.331 kb on - strand, within CA264_07770at 1800.668 kb on + strand, within CA264_07770at 1800.683 kb on - strand, within CA264_07770at 1800.725 kb on - strand, within CA264_07770at 1800.733 kb on + strand, within CA264_07770at 1800.733 kb on + strand, within CA264_07770at 1800.842 kb on + strandat 1800.859 kb on + strandat 1800.872 kb on + strandat 1800.873 kb on - strandat 1800.881 kb on + strandat 1800.881 kb on + strandat 1800.882 kb on - strandat 1800.882 kb on - strandat 1800.887 kb on - strandat 1800.981 kb on - strand, within CA264_07775at 1801.051 kb on - strand, within CA264_07775at 1801.072 kb on + strand, within CA264_07775at 1801.120 kb on - strand, within CA264_07775at 1801.450 kb on + strandat 1801.561 kb on + strand, within CA264_07780at 1801.561 kb on + strand, within CA264_07780at 1801.561 kb on + strand, within CA264_07780at 1801.562 kb on - strand, within CA264_07780at 1801.565 kb on - strand, within CA264_07780at 1801.747 kb on + strand, within CA264_07780at 1801.748 kb on - strand, within CA264_07780at 1801.774 kb on + strand, within CA264_07780at 1801.820 kb on + strandat 1801.820 kb on + strandat 1801.874 kb on - strandat 1801.879 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,798,555 - +0.1
1,798,556 + +0.8
1,798,590 + -1.7
1,798,590 + -0.7
1,798,611 + -0.9
1,798,650 + -0.2
1,798,650 + -0.6
1,798,651 - +0.2
1,798,692 - CA264_07765 0.14 -0.7
1,798,700 + CA264_07765 0.15 +0.1
1,798,735 + CA264_07765 0.20 +0.6
1,798,814 + CA264_07765 0.29 -1.4
1,798,814 + CA264_07765 0.29 -1.0
1,798,815 - CA264_07765 0.29 -0.5
1,798,874 - CA264_07765 0.36 +0.1
1,798,874 - CA264_07765 0.36 +0.0
1,798,928 + CA264_07765 0.43 -3.2
1,798,957 + CA264_07765 0.46 -0.7
1,798,983 + CA264_07765 0.49 +1.3
1,799,015 + CA264_07765 0.53 -0.3
1,799,117 + CA264_07765 0.65 -1.4
1,799,165 + CA264_07765 0.71 -0.8
1,799,239 - CA264_07765 0.80 -1.7
1,799,263 + CA264_07765 0.83 -0.7
1,799,264 - CA264_07765 0.83 -1.7
1,799,399 + +0.8
1,799,400 - -0.5
1,799,401 + -2.3
1,799,438 - +1.2
1,799,447 - -0.9
1,799,513 + +1.0
1,799,566 + -0.3
1,799,758 - CA264_07770 0.17 +0.0
1,799,833 + CA264_07770 0.23 -0.0
1,799,834 - CA264_07770 0.23 -0.9
1,799,848 + CA264_07770 0.24 +0.1
1,799,955 - CA264_07770 0.31 -1.5
1,799,959 + CA264_07770 0.31 +0.1
1,799,960 - CA264_07770 0.31 -1.6
1,800,000 + CA264_07770 0.34 +1.1
1,800,000 + CA264_07770 0.34 +0.3
1,800,001 - CA264_07770 0.34 -0.5
1,800,001 - CA264_07770 0.34 -0.3
1,800,101 - CA264_07770 0.41 -1.4
1,800,128 + CA264_07770 0.43 -0.0
1,800,257 + CA264_07770 0.52 -0.7
1,800,331 - CA264_07770 0.57 -0.6
1,800,668 + CA264_07770 0.81 -1.3
1,800,683 - CA264_07770 0.82 -1.3
1,800,725 - CA264_07770 0.85 +1.0
1,800,733 + CA264_07770 0.86 -0.1
1,800,733 + CA264_07770 0.86 +0.2
1,800,842 + -1.0
1,800,859 + -1.8
1,800,872 + +0.8
1,800,873 - +2.0
1,800,881 + +1.6
1,800,881 + -0.3
1,800,882 - -0.7
1,800,882 - +1.6
1,800,887 - -0.2
1,800,981 - CA264_07775 0.12 -2.0
1,801,051 - CA264_07775 0.31 -2.2
1,801,072 + CA264_07775 0.37 +1.9
1,801,120 - CA264_07775 0.50 +0.2
1,801,450 + -0.8
1,801,561 + CA264_07780 0.32 +0.4
1,801,561 + CA264_07780 0.32 +0.3
1,801,561 + CA264_07780 0.32 +2.3
1,801,562 - CA264_07780 0.32 -1.7
1,801,565 - CA264_07780 0.33 -1.4
1,801,747 + CA264_07780 0.77 -1.7
1,801,748 - CA264_07780 0.77 -0.4
1,801,774 + CA264_07780 0.84 -0.5
1,801,820 + +0.3
1,801,820 + +0.9
1,801,874 - -0.4
1,801,879 + +0.6

Or see this region's nucleotide sequence