Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07360

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07350 and CA264_07355 are separated by 136 nucleotidesCA264_07355 and CA264_07360 are separated by 65 nucleotidesCA264_07360 and CA264_07365 are separated by 142 nucleotidesCA264_07365 and CA264_07370 are separated by 541 nucleotides CA264_07350: CA264_07350 - hypothetical protein, at 1,696,241 to 1,696,936 _07350 CA264_07355: CA264_07355 - hypothetical protein, at 1,697,073 to 1,697,798 _07355 CA264_07360: CA264_07360 - hypothetical protein, at 1,697,864 to 1,698,100 _07360 CA264_07365: CA264_07365 - hypothetical protein, at 1,698,243 to 1,698,488 _07365 CA264_07370: CA264_07370 - TetR family transcriptional regulator, at 1,699,030 to 1,699,650 _07370 Position (kb) 1697 1698 1699Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1696.911 kb on + strandat 1696.912 kb on - strandat 1696.912 kb on - strandat 1696.915 kb on + strandat 1696.915 kb on + strandat 1696.916 kb on - strandat 1696.943 kb on - strandat 1696.948 kb on - strandat 1696.955 kb on + strandat 1696.955 kb on + strandat 1696.981 kb on - strandat 1697.072 kb on + strandat 1697.073 kb on - strandat 1697.102 kb on + strandat 1697.102 kb on + strandat 1697.103 kb on - strandat 1697.103 kb on - strandat 1697.107 kb on - strandat 1697.107 kb on - strandat 1697.266 kb on - strand, within CA264_07355at 1697.268 kb on - strand, within CA264_07355at 1697.291 kb on + strand, within CA264_07355at 1697.291 kb on + strand, within CA264_07355at 1697.292 kb on - strand, within CA264_07355at 1697.292 kb on - strand, within CA264_07355at 1697.292 kb on - strand, within CA264_07355at 1697.301 kb on + strand, within CA264_07355at 1697.302 kb on - strand, within CA264_07355at 1697.313 kb on + strand, within CA264_07355at 1697.314 kb on - strand, within CA264_07355at 1697.355 kb on + strand, within CA264_07355at 1697.355 kb on + strand, within CA264_07355at 1697.385 kb on + strand, within CA264_07355at 1697.509 kb on + strand, within CA264_07355at 1697.510 kb on - strand, within CA264_07355at 1697.569 kb on - strand, within CA264_07355at 1697.593 kb on - strand, within CA264_07355at 1697.640 kb on - strand, within CA264_07355at 1697.644 kb on - strand, within CA264_07355at 1697.668 kb on - strand, within CA264_07355at 1697.697 kb on + strand, within CA264_07355at 1697.709 kb on + strand, within CA264_07355at 1697.709 kb on + strand, within CA264_07355at 1697.712 kb on - strand, within CA264_07355at 1697.791 kb on - strandat 1697.796 kb on + strandat 1697.796 kb on + strandat 1697.850 kb on + strandat 1697.851 kb on - strandat 1697.968 kb on + strand, within CA264_07360at 1698.068 kb on - strand, within CA264_07360at 1698.073 kb on + strand, within CA264_07360at 1698.104 kb on + strandat 1698.104 kb on + strandat 1698.105 kb on - strandat 1698.105 kb on - strandat 1698.109 kb on + strandat 1698.109 kb on + strandat 1698.116 kb on - strandat 1698.116 kb on - strandat 1698.188 kb on + strandat 1698.189 kb on - strandat 1698.189 kb on - strandat 1698.189 kb on - strandat 1698.218 kb on + strandat 1698.219 kb on - strandat 1698.232 kb on - strandat 1698.268 kb on + strand, within CA264_07365at 1698.417 kb on - strand, within CA264_07365at 1698.419 kb on + strand, within CA264_07365at 1698.420 kb on - strand, within CA264_07365at 1698.420 kb on - strand, within CA264_07365at 1698.441 kb on - strand, within CA264_07365at 1698.473 kb on + strandat 1698.527 kb on - strandat 1698.527 kb on - strandat 1698.547 kb on + strandat 1698.597 kb on + strandat 1698.689 kb on + strandat 1698.689 kb on + strandat 1698.690 kb on - strandat 1698.690 kb on - strandat 1698.691 kb on + strandat 1698.691 kb on + strandat 1698.691 kb on + strandat 1698.692 kb on - strandat 1698.692 kb on - strandat 1698.695 kb on + strandat 1698.695 kb on + strandat 1698.709 kb on + strandat 1698.787 kb on + strandat 1698.840 kb on + strandat 1698.844 kb on + strandat 1698.918 kb on - strandat 1698.928 kb on + strandat 1698.929 kb on - strandat 1698.991 kb on + strandat 1698.997 kb on + strandat 1698.999 kb on + strandat 1699.003 kb on + strandat 1699.028 kb on + strandat 1699.099 kb on + strand, within CA264_07370at 1699.100 kb on - strand, within CA264_07370

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,696,911 + -0.6
1,696,912 - -0.3
1,696,912 - -1.3
1,696,915 + -1.7
1,696,915 + -1.9
1,696,916 - -2.3
1,696,943 - -0.9
1,696,948 - -1.5
1,696,955 + -1.5
1,696,955 + -2.6
1,696,981 - -0.1
1,697,072 + -2.0
1,697,073 - -1.0
1,697,102 + -3.9
1,697,102 + -2.8
1,697,103 - -1.8
1,697,103 - -0.0
1,697,107 - -2.0
1,697,107 - -0.9
1,697,266 - CA264_07355 0.27 -0.9
1,697,268 - CA264_07355 0.27 -1.9
1,697,291 + CA264_07355 0.30 -3.3
1,697,291 + CA264_07355 0.30 -1.9
1,697,292 - CA264_07355 0.30 -0.6
1,697,292 - CA264_07355 0.30 -0.9
1,697,292 - CA264_07355 0.30 -0.3
1,697,301 + CA264_07355 0.31 -1.0
1,697,302 - CA264_07355 0.32 -2.7
1,697,313 + CA264_07355 0.33 -1.6
1,697,314 - CA264_07355 0.33 -0.4
1,697,355 + CA264_07355 0.39 -1.6
1,697,355 + CA264_07355 0.39 -1.6
1,697,385 + CA264_07355 0.43 +0.1
1,697,509 + CA264_07355 0.60 -0.3
1,697,510 - CA264_07355 0.60 +1.3
1,697,569 - CA264_07355 0.68 -0.3
1,697,593 - CA264_07355 0.72 +0.6
1,697,640 - CA264_07355 0.78 -0.9
1,697,644 - CA264_07355 0.79 -2.1
1,697,668 - CA264_07355 0.82 -1.1
1,697,697 + CA264_07355 0.86 -0.7
1,697,709 + CA264_07355 0.88 -1.2
1,697,709 + CA264_07355 0.88 +1.0
1,697,712 - CA264_07355 0.88 -2.0
1,697,791 - -2.4
1,697,796 + +0.6
1,697,796 + -3.0
1,697,850 + -0.5
1,697,851 - -1.5
1,697,968 + CA264_07360 0.44 -1.9
1,698,068 - CA264_07360 0.86 -0.9
1,698,073 + CA264_07360 0.88 -1.5
1,698,104 + -2.0
1,698,104 + -1.9
1,698,105 - -2.1
1,698,105 - -1.3
1,698,109 + -1.8
1,698,109 + -1.4
1,698,116 - +2.7
1,698,116 - -1.8
1,698,188 + +1.1
1,698,189 - -0.9
1,698,189 - -0.5
1,698,189 - -1.7
1,698,218 + +0.4
1,698,219 - -2.2
1,698,232 - -0.8
1,698,268 + CA264_07365 0.10 +0.2
1,698,417 - CA264_07365 0.71 -3.3
1,698,419 + CA264_07365 0.72 +0.5
1,698,420 - CA264_07365 0.72 -0.7
1,698,420 - CA264_07365 0.72 -1.6
1,698,441 - CA264_07365 0.80 -0.0
1,698,473 + +0.4
1,698,527 - -1.9
1,698,527 - -1.3
1,698,547 + +1.1
1,698,597 + +1.8
1,698,689 + -0.2
1,698,689 + -0.5
1,698,690 - -2.2
1,698,690 - -1.4
1,698,691 + +1.3
1,698,691 + +0.6
1,698,691 + +0.3
1,698,692 - -1.7
1,698,692 - -1.8
1,698,695 + -0.1
1,698,695 + +0.7
1,698,709 + +0.6
1,698,787 + -1.4
1,698,840 + -0.1
1,698,844 + -0.0
1,698,918 - -0.7
1,698,928 + -0.5
1,698,929 - +0.7
1,698,991 + -0.8
1,698,997 + +1.2
1,698,999 + +0.1
1,699,003 + -1.0
1,699,028 + -2.3
1,699,099 + CA264_07370 0.11 -0.4
1,699,100 - CA264_07370 0.11 -2.9

Or see this region's nucleotide sequence