Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07220

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07215 and CA264_07220 are separated by 201 nucleotidesCA264_07220 and CA264_07225 are separated by 247 nucleotidesCA264_07225 and CA264_07230 are separated by 79 nucleotides CA264_07215: CA264_07215 - peptidase M61, at 1,666,120 to 1,667,823 _07215 CA264_07220: CA264_07220 - hypothetical protein, at 1,668,025 to 1,668,447 _07220 CA264_07225: CA264_07225 - hypothetical protein, at 1,668,695 to 1,669,294 _07225 CA264_07230: CA264_07230 - hypothetical protein, at 1,669,374 to 1,669,754 _07230 Position (kb) 1668 1669Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1667.041 kb on + strand, within CA264_07215at 1667.051 kb on + strand, within CA264_07215at 1667.084 kb on + strand, within CA264_07215at 1667.085 kb on - strand, within CA264_07215at 1667.222 kb on - strand, within CA264_07215at 1667.289 kb on - strand, within CA264_07215at 1667.289 kb on - strand, within CA264_07215at 1667.292 kb on + strand, within CA264_07215at 1667.328 kb on + strand, within CA264_07215at 1667.328 kb on + strand, within CA264_07215at 1667.329 kb on - strand, within CA264_07215at 1667.329 kb on - strand, within CA264_07215at 1667.329 kb on - strand, within CA264_07215at 1667.330 kb on + strand, within CA264_07215at 1667.330 kb on + strand, within CA264_07215at 1667.331 kb on - strand, within CA264_07215at 1667.331 kb on - strand, within CA264_07215at 1667.331 kb on - strand, within CA264_07215at 1667.347 kb on + strand, within CA264_07215at 1667.378 kb on + strand, within CA264_07215at 1667.379 kb on - strand, within CA264_07215at 1667.393 kb on + strand, within CA264_07215at 1667.397 kb on + strand, within CA264_07215at 1667.404 kb on - strand, within CA264_07215at 1667.404 kb on - strand, within CA264_07215at 1667.448 kb on - strand, within CA264_07215at 1667.458 kb on + strand, within CA264_07215at 1667.459 kb on - strand, within CA264_07215at 1667.500 kb on - strand, within CA264_07215at 1667.511 kb on + strand, within CA264_07215at 1667.512 kb on - strand, within CA264_07215at 1667.523 kb on - strand, within CA264_07215at 1667.544 kb on - strand, within CA264_07215at 1667.551 kb on - strand, within CA264_07215at 1667.555 kb on - strand, within CA264_07215at 1667.555 kb on - strand, within CA264_07215at 1667.583 kb on - strand, within CA264_07215at 1667.613 kb on + strand, within CA264_07215at 1667.615 kb on + strand, within CA264_07215at 1667.616 kb on - strand, within CA264_07215at 1667.721 kb on - strandat 1667.737 kb on + strandat 1667.770 kb on - strandat 1667.792 kb on - strandat 1667.834 kb on + strandat 1667.890 kb on + strandat 1667.891 kb on - strandat 1667.893 kb on + strandat 1667.932 kb on + strandat 1667.932 kb on + strandat 1667.932 kb on + strandat 1667.997 kb on + strandat 1667.997 kb on + strandat 1667.997 kb on + strandat 1667.997 kb on + strandat 1667.999 kb on + strandat 1668.001 kb on + strandat 1668.001 kb on + strandat 1668.076 kb on + strand, within CA264_07220at 1668.114 kb on - strand, within CA264_07220at 1668.114 kb on - strand, within CA264_07220at 1668.146 kb on - strand, within CA264_07220at 1668.188 kb on + strand, within CA264_07220at 1668.188 kb on + strand, within CA264_07220at 1668.189 kb on - strand, within CA264_07220at 1668.262 kb on + strand, within CA264_07220at 1668.263 kb on - strand, within CA264_07220at 1668.346 kb on + strandat 1668.410 kb on + strandat 1668.411 kb on - strandat 1668.411 kb on - strandat 1668.437 kb on + strandat 1668.438 kb on - strandat 1668.528 kb on + strandat 1668.539 kb on + strandat 1668.566 kb on + strandat 1668.627 kb on + strandat 1668.649 kb on + strandat 1668.672 kb on + strandat 1668.673 kb on - strandat 1668.673 kb on - strandat 1668.673 kb on - strandat 1668.673 kb on - strandat 1668.709 kb on + strandat 1668.709 kb on + strandat 1668.709 kb on + strandat 1668.727 kb on - strandat 1668.731 kb on + strandat 1668.732 kb on - strandat 1668.932 kb on + strand, within CA264_07225at 1668.933 kb on - strand, within CA264_07225at 1668.965 kb on + strand, within CA264_07225at 1669.028 kb on + strand, within CA264_07225at 1669.029 kb on - strand, within CA264_07225at 1669.144 kb on - strand, within CA264_07225at 1669.161 kb on + strand, within CA264_07225at 1669.161 kb on + strand, within CA264_07225at 1669.161 kb on + strand, within CA264_07225at 1669.161 kb on + strand, within CA264_07225at 1669.161 kb on + strand, within CA264_07225at 1669.161 kb on + strand, within CA264_07225at 1669.162 kb on - strand, within CA264_07225at 1669.162 kb on - strand, within CA264_07225at 1669.166 kb on - strand, within CA264_07225at 1669.304 kb on + strandat 1669.304 kb on + strandat 1669.304 kb on + strandat 1669.340 kb on - strandat 1669.362 kb on + strandat 1669.368 kb on - strandat 1669.368 kb on - strandat 1669.373 kb on + strandat 1669.373 kb on + strandat 1669.375 kb on + strandat 1669.379 kb on + strandat 1669.379 kb on + strandat 1669.379 kb on + strandat 1669.379 kb on + strandat 1669.379 kb on + strandat 1669.380 kb on - strandat 1669.380 kb on - strandat 1669.380 kb on - strandat 1669.380 kb on - strandat 1669.392 kb on + strandat 1669.393 kb on - strandat 1669.393 kb on - strandat 1669.393 kb on - strandat 1669.399 kb on + strandat 1669.410 kb on - strandat 1669.410 kb on - strandat 1669.442 kb on + strand, within CA264_07230at 1669.446 kb on + strand, within CA264_07230

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,667,041 + CA264_07215 0.54 -1.3
1,667,051 + CA264_07215 0.55 -0.0
1,667,084 + CA264_07215 0.57 +0.6
1,667,085 - CA264_07215 0.57 -1.3
1,667,222 - CA264_07215 0.65 -1.9
1,667,289 - CA264_07215 0.69 -1.0
1,667,289 - CA264_07215 0.69 -1.4
1,667,292 + CA264_07215 0.69 +0.2
1,667,328 + CA264_07215 0.71 +0.4
1,667,328 + CA264_07215 0.71 +0.1
1,667,329 - CA264_07215 0.71 -1.0
1,667,329 - CA264_07215 0.71 -2.5
1,667,329 - CA264_07215 0.71 -1.2
1,667,330 + CA264_07215 0.71 +0.0
1,667,330 + CA264_07215 0.71 -0.9
1,667,331 - CA264_07215 0.71 -1.7
1,667,331 - CA264_07215 0.71 -2.4
1,667,331 - CA264_07215 0.71 +0.0
1,667,347 + CA264_07215 0.72 -0.5
1,667,378 + CA264_07215 0.74 +1.8
1,667,379 - CA264_07215 0.74 -0.8
1,667,393 + CA264_07215 0.75 +2.2
1,667,397 + CA264_07215 0.75 -1.1
1,667,404 - CA264_07215 0.75 -1.4
1,667,404 - CA264_07215 0.75 -0.7
1,667,448 - CA264_07215 0.78 +1.6
1,667,458 + CA264_07215 0.79 +1.4
1,667,459 - CA264_07215 0.79 +0.1
1,667,500 - CA264_07215 0.81 -0.7
1,667,511 + CA264_07215 0.82 +0.3
1,667,512 - CA264_07215 0.82 +0.1
1,667,523 - CA264_07215 0.82 -1.5
1,667,544 - CA264_07215 0.84 -1.9
1,667,551 - CA264_07215 0.84 -0.9
1,667,555 - CA264_07215 0.84 +0.2
1,667,555 - CA264_07215 0.84 -1.3
1,667,583 - CA264_07215 0.86 -1.5
1,667,613 + CA264_07215 0.88 +3.6
1,667,615 + CA264_07215 0.88 +0.5
1,667,616 - CA264_07215 0.88 -0.9
1,667,721 - +0.4
1,667,737 + +0.5
1,667,770 - +0.5
1,667,792 - -0.3
1,667,834 + -1.0
1,667,890 + -0.3
1,667,891 - -0.7
1,667,893 + +1.2
1,667,932 + +0.7
1,667,932 + -0.2
1,667,932 + +0.0
1,667,997 + +0.8
1,667,997 + +0.5
1,667,997 + +2.2
1,667,997 + -0.1
1,667,999 + +1.0
1,668,001 + -0.5
1,668,001 + +0.5
1,668,076 + CA264_07220 0.12 +0.2
1,668,114 - CA264_07220 0.21 -0.4
1,668,114 - CA264_07220 0.21 +0.1
1,668,146 - CA264_07220 0.29 -1.7
1,668,188 + CA264_07220 0.39 +0.2
1,668,188 + CA264_07220 0.39 +1.3
1,668,189 - CA264_07220 0.39 -0.3
1,668,262 + CA264_07220 0.56 -0.0
1,668,263 - CA264_07220 0.56 -0.5
1,668,346 + +0.2
1,668,410 + +0.6
1,668,411 - +0.6
1,668,411 - -0.6
1,668,437 + -0.2
1,668,438 - +0.6
1,668,528 + -0.1
1,668,539 + -0.1
1,668,566 + -0.3
1,668,627 + +0.3
1,668,649 + -0.2
1,668,672 + -0.2
1,668,673 - +1.0
1,668,673 - +0.2
1,668,673 - -0.6
1,668,673 - -0.3
1,668,709 + +0.2
1,668,709 + +0.4
1,668,709 + +0.5
1,668,727 - +0.1
1,668,731 + +0.5
1,668,732 - -1.2
1,668,932 + CA264_07225 0.40 -0.2
1,668,933 - CA264_07225 0.40 -0.8
1,668,965 + CA264_07225 0.45 -1.3
1,669,028 + CA264_07225 0.56 +0.1
1,669,029 - CA264_07225 0.56 +0.9
1,669,144 - CA264_07225 0.75 +0.6
1,669,161 + CA264_07225 0.78 -0.2
1,669,161 + CA264_07225 0.78 +0.2
1,669,161 + CA264_07225 0.78 +0.1
1,669,161 + CA264_07225 0.78 -0.2
1,669,161 + CA264_07225 0.78 -0.3
1,669,161 + CA264_07225 0.78 -0.4
1,669,162 - CA264_07225 0.78 +1.8
1,669,162 - CA264_07225 0.78 -0.4
1,669,166 - CA264_07225 0.79 +0.0
1,669,304 + -0.5
1,669,304 + -0.5
1,669,304 + -2.7
1,669,340 - +0.4
1,669,362 + -1.0
1,669,368 - -0.4
1,669,368 - -0.7
1,669,373 + +1.1
1,669,373 + +0.2
1,669,375 + +0.1
1,669,379 + +0.1
1,669,379 + +0.3
1,669,379 + -0.4
1,669,379 + -0.7
1,669,379 + +0.2
1,669,380 - -1.2
1,669,380 - +0.4
1,669,380 - +0.0
1,669,380 - +0.4
1,669,392 + +0.7
1,669,393 - +0.3
1,669,393 - +0.2
1,669,393 - +0.4
1,669,399 + +0.2
1,669,410 - -0.1
1,669,410 - -0.0
1,669,442 + CA264_07230 0.18 +0.4
1,669,446 + CA264_07230 0.19 -0.9

Or see this region's nucleotide sequence