Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07115

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07105 and CA264_07110 are separated by 283 nucleotidesCA264_07110 and CA264_07115 are separated by 4 nucleotidesCA264_07115 and CA264_07120 are separated by 324 nucleotides CA264_07105: CA264_07105 - phosphohydrolase, at 1,638,463 to 1,639,722 _07105 CA264_07110: CA264_07110 - hypothetical protein, at 1,640,006 to 1,640,308 _07110 CA264_07115: CA264_07115 - hypothetical protein, at 1,640,313 to 1,640,813 _07115 CA264_07120: CA264_07120 - citrate (Si)-synthase, at 1,641,138 to 1,642,424 _07120 Position (kb) 1640 1641Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1639.459 kb on - strand, within CA264_07105at 1639.548 kb on - strand, within CA264_07105at 1639.604 kb on + strandat 1639.604 kb on + strandat 1639.670 kb on + strandat 1639.671 kb on - strandat 1639.706 kb on - strandat 1639.706 kb on - strandat 1639.711 kb on - strandat 1639.727 kb on + strandat 1639.727 kb on + strandat 1639.727 kb on + strandat 1639.763 kb on + strandat 1639.766 kb on - strandat 1639.794 kb on + strandat 1639.794 kb on + strandat 1639.808 kb on - strandat 1639.886 kb on + strandat 1639.894 kb on + strandat 1639.894 kb on + strandat 1639.909 kb on + strandat 1639.909 kb on + strandat 1639.909 kb on + strandat 1639.931 kb on + strandat 1639.931 kb on + strandat 1639.936 kb on - strandat 1639.937 kb on + strandat 1639.937 kb on + strandat 1639.943 kb on + strandat 1639.984 kb on + strandat 1639.987 kb on + strandat 1639.992 kb on + strandat 1639.993 kb on - strandat 1640.005 kb on + strandat 1640.005 kb on + strandat 1640.005 kb on + strandat 1640.005 kb on + strandat 1640.005 kb on + strandat 1640.006 kb on - strandat 1640.006 kb on - strandat 1640.006 kb on - strandat 1640.036 kb on + strandat 1640.037 kb on - strand, within CA264_07110at 1640.037 kb on - strand, within CA264_07110at 1640.038 kb on + strand, within CA264_07110at 1640.038 kb on + strand, within CA264_07110at 1640.039 kb on - strand, within CA264_07110at 1640.039 kb on - strand, within CA264_07110at 1640.046 kb on + strand, within CA264_07110at 1640.125 kb on + strand, within CA264_07110at 1640.125 kb on + strand, within CA264_07110at 1640.131 kb on - strand, within CA264_07110at 1640.278 kb on + strandat 1640.279 kb on - strandat 1640.279 kb on - strandat 1640.306 kb on + strandat 1640.314 kb on + strandat 1640.314 kb on + strandat 1640.352 kb on - strandat 1640.352 kb on - strandat 1640.352 kb on - strandat 1640.411 kb on + strand, within CA264_07115at 1640.416 kb on - strand, within CA264_07115at 1640.430 kb on + strand, within CA264_07115at 1640.440 kb on + strand, within CA264_07115at 1640.441 kb on - strand, within CA264_07115at 1640.444 kb on + strand, within CA264_07115at 1640.445 kb on - strand, within CA264_07115at 1640.477 kb on + strand, within CA264_07115at 1640.528 kb on + strand, within CA264_07115at 1640.528 kb on + strand, within CA264_07115at 1640.624 kb on + strand, within CA264_07115at 1640.624 kb on + strand, within CA264_07115at 1640.625 kb on - strand, within CA264_07115at 1640.632 kb on + strand, within CA264_07115at 1640.632 kb on + strand, within CA264_07115at 1640.633 kb on - strand, within CA264_07115at 1640.656 kb on + strand, within CA264_07115at 1640.657 kb on - strand, within CA264_07115at 1640.707 kb on + strand, within CA264_07115at 1640.708 kb on - strand, within CA264_07115at 1640.762 kb on + strand, within CA264_07115at 1640.763 kb on - strand, within CA264_07115at 1640.764 kb on + strandat 1640.764 kb on + strandat 1640.764 kb on + strandat 1640.764 kb on + strandat 1640.764 kb on + strandat 1640.764 kb on + strandat 1640.765 kb on - strandat 1640.765 kb on - strandat 1640.765 kb on - strandat 1640.765 kb on - strandat 1640.765 kb on - strandat 1640.854 kb on + strandat 1640.854 kb on + strandat 1640.855 kb on - strandat 1640.855 kb on - strandat 1640.858 kb on + strandat 1640.859 kb on - strandat 1640.865 kb on + strandat 1640.866 kb on - strandat 1640.958 kb on + strandat 1640.959 kb on - strandat 1640.959 kb on - strandat 1640.971 kb on - strandat 1640.971 kb on - strandat 1640.976 kb on - strandat 1640.998 kb on + strandat 1641.039 kb on - strandat 1641.048 kb on + strandat 1641.048 kb on + strandat 1641.049 kb on - strandat 1641.049 kb on - strandat 1641.049 kb on - strandat 1641.050 kb on + strandat 1641.050 kb on + strandat 1641.051 kb on - strandat 1641.102 kb on + strandat 1641.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,639,459 - CA264_07105 0.79 +1.1
1,639,548 - CA264_07105 0.86 +0.5
1,639,604 + -0.3
1,639,604 + +0.2
1,639,670 + -0.4
1,639,671 - -0.7
1,639,706 - -1.3
1,639,706 - +0.5
1,639,711 - +0.4
1,639,727 + -1.2
1,639,727 + -0.5
1,639,727 + +0.1
1,639,763 + +0.0
1,639,766 - -0.0
1,639,794 + -0.3
1,639,794 + -0.4
1,639,808 - +0.5
1,639,886 + -1.1
1,639,894 + -2.0
1,639,894 + -0.9
1,639,909 + +2.1
1,639,909 + -1.0
1,639,909 + -1.9
1,639,931 + -0.0
1,639,931 + -2.8
1,639,936 - -0.1
1,639,937 + -0.8
1,639,937 + -1.2
1,639,943 + -2.6
1,639,984 + -0.3
1,639,987 + +0.9
1,639,992 + -1.0
1,639,993 - -1.3
1,640,005 + -0.6
1,640,005 + -0.5
1,640,005 + -1.0
1,640,005 + -1.8
1,640,005 + -1.4
1,640,006 - +0.7
1,640,006 - +0.5
1,640,006 - -0.7
1,640,036 + +0.2
1,640,037 - CA264_07110 0.10 +0.4
1,640,037 - CA264_07110 0.10 +0.4
1,640,038 + CA264_07110 0.11 +0.3
1,640,038 + CA264_07110 0.11 -1.3
1,640,039 - CA264_07110 0.11 +1.0
1,640,039 - CA264_07110 0.11 +0.3
1,640,046 + CA264_07110 0.13 -2.0
1,640,125 + CA264_07110 0.39 +0.1
1,640,125 + CA264_07110 0.39 -1.3
1,640,131 - CA264_07110 0.41 +0.0
1,640,278 + -1.2
1,640,279 - +0.1
1,640,279 - +0.0
1,640,306 + +0.4
1,640,314 + -0.6
1,640,314 + +0.4
1,640,352 - +1.1
1,640,352 - -0.2
1,640,352 - +0.4
1,640,411 + CA264_07115 0.20 -0.4
1,640,416 - CA264_07115 0.21 -2.7
1,640,430 + CA264_07115 0.23 -2.9
1,640,440 + CA264_07115 0.25 -1.4
1,640,441 - CA264_07115 0.26 +1.5
1,640,444 + CA264_07115 0.26 +0.1
1,640,445 - CA264_07115 0.26 +0.8
1,640,477 + CA264_07115 0.33 -0.6
1,640,528 + CA264_07115 0.43 -1.1
1,640,528 + CA264_07115 0.43 -0.5
1,640,624 + CA264_07115 0.62 -0.9
1,640,624 + CA264_07115 0.62 -1.3
1,640,625 - CA264_07115 0.62 +2.1
1,640,632 + CA264_07115 0.64 -1.4
1,640,632 + CA264_07115 0.64 -0.4
1,640,633 - CA264_07115 0.64 -1.5
1,640,656 + CA264_07115 0.68 -0.9
1,640,657 - CA264_07115 0.69 -1.0
1,640,707 + CA264_07115 0.79 -1.9
1,640,708 - CA264_07115 0.79 -0.8
1,640,762 + CA264_07115 0.90 -2.1
1,640,763 - CA264_07115 0.90 -0.2
1,640,764 + -2.3
1,640,764 + -0.2
1,640,764 + -0.5
1,640,764 + -0.4
1,640,764 + -1.1
1,640,764 + -1.0
1,640,765 - +0.4
1,640,765 - -0.5
1,640,765 - -0.1
1,640,765 - -0.5
1,640,765 - +0.7
1,640,854 + -1.2
1,640,854 + -1.0
1,640,855 - +0.8
1,640,855 - +0.2
1,640,858 + -0.4
1,640,859 - -0.4
1,640,865 + -1.7
1,640,866 - -0.5
1,640,958 + -1.4
1,640,959 - +0.2
1,640,959 - -0.1
1,640,971 - +0.4
1,640,971 - +0.8
1,640,976 - -2.4
1,640,998 + -0.5
1,641,039 - -1.2
1,641,048 + -0.1
1,641,048 + -0.5
1,641,049 - +0.7
1,641,049 - +0.9
1,641,049 - +1.1
1,641,050 + -2.1
1,641,050 + -1.0
1,641,051 - +0.1
1,641,102 + -1.5
1,641,124 - +1.6

Or see this region's nucleotide sequence