Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06945

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06940 and CA264_06945 are separated by 481 nucleotidesCA264_06945 and CA264_06950 are separated by 51 nucleotidesCA264_06950 and CA264_06955 are separated by 117 nucleotides CA264_06940: CA264_06940 - branched-chain amino acid aminotransferase, at 1,604,859 to 1,605,743 _06940 CA264_06945: CA264_06945 - short-chain dehydrogenase, at 1,606,225 to 1,607,013 _06945 CA264_06950: CA264_06950 - glutathione peroxidase, at 1,607,065 to 1,607,655 _06950 CA264_06955: CA264_06955 - LLM class flavin-dependent oxidoreductase, at 1,607,773 to 1,608,780 _06955 Position (kb) 1606 1607 1608Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1605.263 kb on + strand, within CA264_06940at 1605.263 kb on + strand, within CA264_06940at 1605.269 kb on - strand, within CA264_06940at 1605.269 kb on - strand, within CA264_06940at 1605.322 kb on + strand, within CA264_06940at 1605.330 kb on + strand, within CA264_06940at 1605.331 kb on - strand, within CA264_06940at 1605.439 kb on + strandat 1605.457 kb on + strand, within CA264_06940at 1605.571 kb on + strand, within CA264_06940at 1605.591 kb on + strand, within CA264_06940at 1605.591 kb on + strand, within CA264_06940at 1605.592 kb on - strand, within CA264_06940at 1605.592 kb on - strand, within CA264_06940at 1605.592 kb on - strand, within CA264_06940at 1605.592 kb on - strand, within CA264_06940at 1605.649 kb on + strand, within CA264_06940at 1605.667 kb on + strandat 1605.734 kb on + strandat 1605.739 kb on + strandat 1605.746 kb on + strandat 1605.746 kb on + strandat 1605.747 kb on - strandat 1605.764 kb on - strandat 1605.764 kb on - strandat 1605.767 kb on + strandat 1605.767 kb on + strandat 1605.768 kb on - strandat 1605.769 kb on + strandat 1605.769 kb on + strandat 1605.769 kb on + strandat 1605.770 kb on - strandat 1605.770 kb on - strandat 1605.770 kb on - strandat 1605.770 kb on - strandat 1605.770 kb on - strandat 1605.773 kb on + strandat 1605.828 kb on + strandat 1605.828 kb on + strandat 1605.829 kb on - strandat 1605.864 kb on - strandat 1605.895 kb on + strandat 1605.896 kb on - strandat 1605.906 kb on + strandat 1605.907 kb on - strandat 1606.058 kb on + strandat 1606.058 kb on + strandat 1606.059 kb on - strandat 1606.059 kb on - strandat 1606.059 kb on - strandat 1606.061 kb on + strandat 1606.062 kb on - strandat 1606.062 kb on - strandat 1606.121 kb on + strandat 1606.121 kb on + strandat 1606.122 kb on - strandat 1606.122 kb on - strandat 1606.127 kb on + strandat 1606.211 kb on - strandat 1606.233 kb on - strandat 1606.314 kb on - strand, within CA264_06945at 1606.322 kb on + strand, within CA264_06945at 1606.540 kb on - strand, within CA264_06945at 1606.540 kb on - strand, within CA264_06945at 1606.605 kb on - strand, within CA264_06945at 1606.654 kb on + strand, within CA264_06945at 1606.654 kb on + strand, within CA264_06945at 1606.681 kb on + strand, within CA264_06945at 1606.791 kb on + strand, within CA264_06945at 1606.886 kb on + strand, within CA264_06945at 1606.886 kb on + strand, within CA264_06945at 1606.886 kb on + strand, within CA264_06945at 1606.947 kb on - strandat 1607.086 kb on + strandat 1607.086 kb on + strandat 1607.156 kb on + strand, within CA264_06950at 1607.156 kb on + strand, within CA264_06950at 1607.225 kb on + strand, within CA264_06950at 1607.296 kb on - strand, within CA264_06950at 1607.432 kb on + strand, within CA264_06950at 1607.465 kb on - strand, within CA264_06950at 1607.465 kb on - strand, within CA264_06950at 1607.532 kb on - strand, within CA264_06950at 1607.658 kb on + strandat 1607.662 kb on + strandat 1607.663 kb on - strandat 1607.663 kb on - strandat 1607.663 kb on - strandat 1607.736 kb on - strandat 1607.736 kb on - strandat 1607.774 kb on + strandat 1607.807 kb on + strandat 1607.834 kb on + strandat 1607.838 kb on + strandat 1607.838 kb on + strandat 1607.838 kb on + strandat 1607.839 kb on - strandat 1607.879 kb on - strand, within CA264_06955at 1607.879 kb on - strand, within CA264_06955at 1607.880 kb on + strand, within CA264_06955at 1607.930 kb on + strand, within CA264_06955at 1607.931 kb on - strand, within CA264_06955

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,605,263 + CA264_06940 0.46 +0.1
1,605,263 + CA264_06940 0.46 +0.2
1,605,269 - CA264_06940 0.46 -0.2
1,605,269 - CA264_06940 0.46 +0.0
1,605,322 + CA264_06940 0.52 -1.1
1,605,330 + CA264_06940 0.53 -0.7
1,605,331 - CA264_06940 0.53 +0.2
1,605,439 + +2.1
1,605,457 + CA264_06940 0.68 -0.1
1,605,571 + CA264_06940 0.80 +0.5
1,605,591 + CA264_06940 0.83 +2.1
1,605,591 + CA264_06940 0.83 -0.8
1,605,592 - CA264_06940 0.83 -1.6
1,605,592 - CA264_06940 0.83 -0.8
1,605,592 - CA264_06940 0.83 -0.2
1,605,592 - CA264_06940 0.83 -0.1
1,605,649 + CA264_06940 0.89 -0.9
1,605,667 + -0.1
1,605,734 + -0.7
1,605,739 + -0.5
1,605,746 + -0.1
1,605,746 + +0.6
1,605,747 - -0.7
1,605,764 - -0.2
1,605,764 - -0.2
1,605,767 + -0.4
1,605,767 + -0.1
1,605,768 - -0.2
1,605,769 + +0.0
1,605,769 + +0.4
1,605,769 + -0.5
1,605,770 - -0.8
1,605,770 - -1.0
1,605,770 - +0.9
1,605,770 - +0.2
1,605,770 - -0.4
1,605,773 + -0.1
1,605,828 + -0.3
1,605,828 + +1.4
1,605,829 - -1.4
1,605,864 - -1.0
1,605,895 + +0.4
1,605,896 - -1.1
1,605,906 + -0.0
1,605,907 - -1.6
1,606,058 + -0.2
1,606,058 + +0.5
1,606,059 - -1.9
1,606,059 - -0.3
1,606,059 - -2.2
1,606,061 + +1.3
1,606,062 - +0.7
1,606,062 - -0.6
1,606,121 + +3.1
1,606,121 + -0.0
1,606,122 - -0.2
1,606,122 - +0.1
1,606,127 + -0.1
1,606,211 - -0.5
1,606,233 - -0.0
1,606,314 - CA264_06945 0.11 -1.5
1,606,322 + CA264_06945 0.12 +0.3
1,606,540 - CA264_06945 0.40 +0.5
1,606,540 - CA264_06945 0.40 +0.9
1,606,605 - CA264_06945 0.48 -0.1
1,606,654 + CA264_06945 0.54 +1.0
1,606,654 + CA264_06945 0.54 +0.3
1,606,681 + CA264_06945 0.58 -1.2
1,606,791 + CA264_06945 0.72 +1.2
1,606,886 + CA264_06945 0.84 +0.0
1,606,886 + CA264_06945 0.84 -1.0
1,606,886 + CA264_06945 0.84 +0.3
1,606,947 - -0.0
1,607,086 + -0.4
1,607,086 + +0.2
1,607,156 + CA264_06950 0.15 -0.2
1,607,156 + CA264_06950 0.15 +0.1
1,607,225 + CA264_06950 0.27 -0.2
1,607,296 - CA264_06950 0.39 +0.3
1,607,432 + CA264_06950 0.62 -0.2
1,607,465 - CA264_06950 0.68 -0.8
1,607,465 - CA264_06950 0.68 -0.3
1,607,532 - CA264_06950 0.79 -0.7
1,607,658 + -1.4
1,607,662 + -3.3
1,607,663 - +0.7
1,607,663 - -0.2
1,607,663 - -0.3
1,607,736 - -1.5
1,607,736 - -1.7
1,607,774 + +0.5
1,607,807 + -0.6
1,607,834 + -0.3
1,607,838 + -1.7
1,607,838 + -0.0
1,607,838 + -0.3
1,607,839 - -1.4
1,607,879 - CA264_06955 0.11 -0.2
1,607,879 - CA264_06955 0.11 -1.9
1,607,880 + CA264_06955 0.11 -1.0
1,607,930 + CA264_06955 0.16 -1.0
1,607,931 - CA264_06955 0.16 -2.1

Or see this region's nucleotide sequence