Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05060

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05055 and CA264_05060 are separated by 1 nucleotidesCA264_05060 and CA264_05065 are separated by 91 nucleotides CA264_05055: CA264_05055 - anthranilate synthase component I, at 1,171,186 to 1,172,598 _05055 CA264_05060: CA264_05060 - glutamine amidotransferase, at 1,172,600 to 1,173,163 _05060 CA264_05065: CA264_05065 - anthranilate phosphoribosyltransferase, at 1,173,255 to 1,174,262 _05065 Position (kb) 1172 1173 1174Strain fitness (log2 ratio) -2 -1 0 1 2at 1171.610 kb on + strand, within CA264_05055at 1171.611 kb on - strand, within CA264_05055at 1171.611 kb on - strand, within CA264_05055at 1171.611 kb on - strand, within CA264_05055at 1171.612 kb on + strand, within CA264_05055at 1171.613 kb on - strand, within CA264_05055at 1171.615 kb on + strand, within CA264_05055at 1171.616 kb on - strand, within CA264_05055at 1171.624 kb on + strand, within CA264_05055at 1171.635 kb on + strand, within CA264_05055at 1171.636 kb on - strand, within CA264_05055at 1171.666 kb on + strand, within CA264_05055at 1171.667 kb on - strand, within CA264_05055at 1171.669 kb on - strand, within CA264_05055at 1171.669 kb on - strand, within CA264_05055at 1171.684 kb on + strand, within CA264_05055at 1171.755 kb on + strand, within CA264_05055at 1171.818 kb on - strand, within CA264_05055at 1171.909 kb on - strand, within CA264_05055at 1171.933 kb on - strand, within CA264_05055at 1171.948 kb on + strand, within CA264_05055at 1171.949 kb on - strand, within CA264_05055at 1171.957 kb on + strand, within CA264_05055at 1171.967 kb on - strand, within CA264_05055at 1171.977 kb on + strand, within CA264_05055at 1172.477 kb on + strandat 1172.478 kb on - strandat 1172.478 kb on - strandat 1172.479 kb on + strandat 1172.480 kb on - strandat 1172.625 kb on - strandat 1172.626 kb on - strandat 1172.642 kb on - strandat 1172.679 kb on + strand, within CA264_05060at 1172.759 kb on - strand, within CA264_05060at 1172.802 kb on - strand, within CA264_05060at 1172.835 kb on + strand, within CA264_05060at 1172.859 kb on + strand, within CA264_05060at 1172.860 kb on - strand, within CA264_05060at 1173.050 kb on + strand, within CA264_05060at 1173.053 kb on - strand, within CA264_05060at 1173.162 kb on - strandat 1173.201 kb on + strandat 1173.234 kb on + strandat 1173.240 kb on + strandat 1173.241 kb on - strandat 1173.277 kb on + strandat 1173.468 kb on + strand, within CA264_05065at 1173.469 kb on - strand, within CA264_05065at 1173.471 kb on - strand, within CA264_05065at 1173.513 kb on - strand, within CA264_05065at 1173.524 kb on - strand, within CA264_05065at 1173.524 kb on - strand, within CA264_05065at 1173.528 kb on - strand, within CA264_05065at 1173.528 kb on - strand, within CA264_05065at 1173.532 kb on + strand, within CA264_05065at 1173.563 kb on - strand, within CA264_05065at 1173.585 kb on + strand, within CA264_05065at 1173.675 kb on - strand, within CA264_05065at 1173.675 kb on - strand, within CA264_05065at 1173.677 kb on - strand, within CA264_05065at 1173.677 kb on - strand, within CA264_05065at 1173.684 kb on + strand, within CA264_05065at 1173.684 kb on + strand, within CA264_05065at 1173.685 kb on - strand, within CA264_05065at 1173.685 kb on - strand, within CA264_05065at 1173.687 kb on - strand, within CA264_05065at 1173.687 kb on - strand, within CA264_05065at 1173.690 kb on - strand, within CA264_05065at 1173.690 kb on - strand, within CA264_05065at 1173.859 kb on - strand, within CA264_05065at 1173.859 kb on - strand, within CA264_05065at 1173.859 kb on - strand, within CA264_05065at 1173.859 kb on - strand, within CA264_05065at 1173.870 kb on + strand, within CA264_05065at 1173.893 kb on + strand, within CA264_05065at 1173.897 kb on - strand, within CA264_05065at 1173.898 kb on + strand, within CA264_05065at 1173.899 kb on - strand, within CA264_05065at 1173.899 kb on - strand, within CA264_05065at 1173.905 kb on + strand, within CA264_05065at 1173.906 kb on - strand, within CA264_05065at 1173.953 kb on - strand, within CA264_05065at 1174.026 kb on - strand, within CA264_05065

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,171,610 + CA264_05055 0.30 -0.0
1,171,611 - CA264_05055 0.30 -0.9
1,171,611 - CA264_05055 0.30 -1.0
1,171,611 - CA264_05055 0.30 -0.9
1,171,612 + CA264_05055 0.30 +0.6
1,171,613 - CA264_05055 0.30 -1.3
1,171,615 + CA264_05055 0.30 -0.0
1,171,616 - CA264_05055 0.30 -0.5
1,171,624 + CA264_05055 0.31 +1.1
1,171,635 + CA264_05055 0.32 +0.2
1,171,636 - CA264_05055 0.32 -0.2
1,171,666 + CA264_05055 0.34 -1.8
1,171,667 - CA264_05055 0.34 -0.1
1,171,669 - CA264_05055 0.34 -1.2
1,171,669 - CA264_05055 0.34 -1.9
1,171,684 + CA264_05055 0.35 -0.9
1,171,755 + CA264_05055 0.40 -1.0
1,171,818 - CA264_05055 0.45 +0.8
1,171,909 - CA264_05055 0.51 -1.1
1,171,933 - CA264_05055 0.53 -0.4
1,171,948 + CA264_05055 0.54 -1.3
1,171,949 - CA264_05055 0.54 +1.1
1,171,957 + CA264_05055 0.55 -0.9
1,171,967 - CA264_05055 0.55 -1.0
1,171,977 + CA264_05055 0.56 -2.4
1,172,477 + -1.5
1,172,478 - -0.1
1,172,478 - -0.3
1,172,479 + -0.3
1,172,480 - +0.8
1,172,625 - +0.4
1,172,626 - +1.2
1,172,642 - +0.5
1,172,679 + CA264_05060 0.14 -1.3
1,172,759 - CA264_05060 0.28 -0.4
1,172,802 - CA264_05060 0.36 -0.4
1,172,835 + CA264_05060 0.42 -0.2
1,172,859 + CA264_05060 0.46 +0.2
1,172,860 - CA264_05060 0.46 +0.5
1,173,050 + CA264_05060 0.80 -2.3
1,173,053 - CA264_05060 0.80 +0.6
1,173,162 - -0.1
1,173,201 + -1.7
1,173,234 + -2.2
1,173,240 + -0.5
1,173,241 - +1.6
1,173,277 + +1.7
1,173,468 + CA264_05065 0.21 -0.5
1,173,469 - CA264_05065 0.21 +1.1
1,173,471 - CA264_05065 0.21 +1.2
1,173,513 - CA264_05065 0.26 +0.7
1,173,524 - CA264_05065 0.27 +0.9
1,173,524 - CA264_05065 0.27 +0.4
1,173,528 - CA264_05065 0.27 +0.3
1,173,528 - CA264_05065 0.27 -0.9
1,173,532 + CA264_05065 0.27 -0.8
1,173,563 - CA264_05065 0.31 -0.6
1,173,585 + CA264_05065 0.33 +0.4
1,173,675 - CA264_05065 0.42 +2.2
1,173,675 - CA264_05065 0.42 +0.4
1,173,677 - CA264_05065 0.42 +0.2
1,173,677 - CA264_05065 0.42 -0.6
1,173,684 + CA264_05065 0.43 -1.6
1,173,684 + CA264_05065 0.43 -0.7
1,173,685 - CA264_05065 0.43 +0.1
1,173,685 - CA264_05065 0.43 +1.2
1,173,687 - CA264_05065 0.43 +0.2
1,173,687 - CA264_05065 0.43 +0.6
1,173,690 - CA264_05065 0.43 +2.7
1,173,690 - CA264_05065 0.43 +0.4
1,173,859 - CA264_05065 0.60 +1.0
1,173,859 - CA264_05065 0.60 +0.2
1,173,859 - CA264_05065 0.60 +0.5
1,173,859 - CA264_05065 0.60 +1.8
1,173,870 + CA264_05065 0.61 -0.5
1,173,893 + CA264_05065 0.63 -0.8
1,173,897 - CA264_05065 0.64 +0.5
1,173,898 + CA264_05065 0.64 -0.7
1,173,899 - CA264_05065 0.64 +0.7
1,173,899 - CA264_05065 0.64 -0.3
1,173,905 + CA264_05065 0.64 -0.7
1,173,906 - CA264_05065 0.65 +0.2
1,173,953 - CA264_05065 0.69 +0.5
1,174,026 - CA264_05065 0.76 +0.9

Or see this region's nucleotide sequence