Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04835

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_04830 and CA264_04835 are separated by 361 nucleotidesCA264_04835 and CA264_04840 are separated by 183 nucleotides CA264_04830: CA264_04830 - hypothetical protein, at 1,119,267 to 1,119,818 _04830 CA264_04835: CA264_04835 - ABC transporter ATP-binding protein, at 1,120,180 to 1,122,105 _04835 CA264_04840: CA264_04840 - hypothetical protein, at 1,122,289 to 1,123,134 _04840 Position (kb) 1120 1121 1122 1123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1119.268 kb on + strandat 1119.360 kb on + strand, within CA264_04830at 1119.361 kb on - strand, within CA264_04830at 1119.371 kb on + strand, within CA264_04830at 1119.371 kb on + strand, within CA264_04830at 1119.372 kb on - strand, within CA264_04830at 1119.380 kb on - strand, within CA264_04830at 1119.444 kb on - strandat 1119.444 kb on - strand, within CA264_04830at 1119.472 kb on + strand, within CA264_04830at 1119.473 kb on - strand, within CA264_04830at 1119.475 kb on + strand, within CA264_04830at 1119.475 kb on + strand, within CA264_04830at 1119.476 kb on - strand, within CA264_04830at 1119.565 kb on + strand, within CA264_04830at 1119.565 kb on + strand, within CA264_04830at 1119.652 kb on + strand, within CA264_04830at 1119.661 kb on - strand, within CA264_04830at 1119.795 kb on + strandat 1119.818 kb on + strandat 1119.818 kb on + strandat 1119.819 kb on - strandat 1119.819 kb on - strandat 1119.820 kb on + strandat 1119.823 kb on + strandat 1119.824 kb on - strandat 1119.836 kb on - strandat 1119.853 kb on + strandat 1119.858 kb on - strandat 1119.874 kb on + strandat 1119.874 kb on + strandat 1119.879 kb on + strandat 1119.908 kb on + strandat 1119.954 kb on - strandat 1119.954 kb on - strandat 1120.005 kb on + strandat 1120.005 kb on + strandat 1120.005 kb on + strandat 1120.006 kb on - strandat 1120.006 kb on - strandat 1120.121 kb on + strandat 1120.167 kb on + strandat 1120.191 kb on + strandat 1120.228 kb on + strandat 1120.229 kb on - strandat 1120.249 kb on - strandat 1120.249 kb on - strandat 1120.250 kb on + strandat 1120.251 kb on - strandat 1120.263 kb on + strandat 1120.264 kb on - strandat 1120.296 kb on + strandat 1120.297 kb on - strandat 1120.406 kb on - strand, within CA264_04835at 1120.478 kb on + strand, within CA264_04835at 1120.487 kb on + strand, within CA264_04835at 1120.506 kb on + strand, within CA264_04835at 1120.526 kb on + strand, within CA264_04835at 1120.527 kb on - strand, within CA264_04835at 1120.575 kb on + strand, within CA264_04835at 1120.761 kb on + strand, within CA264_04835at 1120.777 kb on + strand, within CA264_04835at 1120.777 kb on + strand, within CA264_04835at 1120.781 kb on + strand, within CA264_04835at 1120.781 kb on + strand, within CA264_04835at 1120.782 kb on - strand, within CA264_04835at 1120.782 kb on - strand, within CA264_04835at 1120.782 kb on - strand, within CA264_04835at 1120.812 kb on - strand, within CA264_04835at 1120.883 kb on + strand, within CA264_04835at 1120.883 kb on + strand, within CA264_04835at 1120.884 kb on - strand, within CA264_04835at 1120.886 kb on - strand, within CA264_04835at 1120.893 kb on + strand, within CA264_04835at 1120.894 kb on - strand, within CA264_04835at 1120.897 kb on + strand, within CA264_04835at 1120.898 kb on - strand, within CA264_04835at 1120.899 kb on + strand, within CA264_04835at 1120.899 kb on + strand, within CA264_04835at 1120.899 kb on + strand, within CA264_04835at 1120.906 kb on + strand, within CA264_04835at 1120.907 kb on - strand, within CA264_04835at 1120.952 kb on - strand, within CA264_04835at 1120.973 kb on + strand, within CA264_04835at 1121.005 kb on - strand, within CA264_04835at 1121.103 kb on + strand, within CA264_04835at 1121.110 kb on - strand, within CA264_04835at 1121.115 kb on + strand, within CA264_04835at 1121.188 kb on - strand, within CA264_04835at 1121.188 kb on - strand, within CA264_04835at 1121.226 kb on + strand, within CA264_04835at 1121.260 kb on - strand, within CA264_04835at 1121.281 kb on - strand, within CA264_04835at 1121.332 kb on - strand, within CA264_04835at 1121.345 kb on - strand, within CA264_04835at 1121.479 kb on + strand, within CA264_04835at 1121.479 kb on + strand, within CA264_04835at 1121.479 kb on + strand, within CA264_04835at 1121.480 kb on - strand, within CA264_04835at 1121.632 kb on + strand, within CA264_04835at 1121.701 kb on + strand, within CA264_04835at 1121.701 kb on + strand, within CA264_04835at 1121.702 kb on - strand, within CA264_04835at 1121.703 kb on + strand, within CA264_04835at 1121.737 kb on - strand, within CA264_04835at 1121.741 kb on - strand, within CA264_04835at 1122.037 kb on - strandat 1122.037 kb on - strandat 1122.037 kb on - strandat 1122.130 kb on + strandat 1122.137 kb on - strandat 1122.205 kb on + strandat 1122.215 kb on + strandat 1122.288 kb on + strandat 1122.400 kb on + strand, within CA264_04840at 1122.401 kb on - strand, within CA264_04840at 1122.401 kb on - strand, within CA264_04840at 1122.437 kb on + strand, within CA264_04840at 1122.437 kb on + strand, within CA264_04840at 1122.437 kb on + strand, within CA264_04840at 1122.438 kb on - strand, within CA264_04840at 1122.454 kb on + strand, within CA264_04840at 1122.454 kb on + strand, within CA264_04840at 1122.456 kb on + strand, within CA264_04840at 1122.487 kb on - strand, within CA264_04840at 1122.648 kb on - strand, within CA264_04840at 1122.648 kb on - strand, within CA264_04840at 1122.691 kb on - strand, within CA264_04840at 1122.726 kb on + strand, within CA264_04840at 1122.726 kb on + strand, within CA264_04840at 1122.726 kb on + strand, within CA264_04840at 1122.726 kb on + strand, within CA264_04840at 1122.727 kb on - strand, within CA264_04840at 1122.727 kb on - strand, within CA264_04840at 1122.727 kb on - strand, within CA264_04840at 1122.727 kb on - strand, within CA264_04840at 1122.728 kb on + strand, within CA264_04840at 1122.728 kb on + strand, within CA264_04840at 1122.733 kb on + strand, within CA264_04840at 1122.767 kb on + strand, within CA264_04840at 1122.767 kb on + strand, within CA264_04840at 1122.768 kb on - strand, within CA264_04840at 1122.768 kb on - strand, within CA264_04840at 1122.768 kb on - strand, within CA264_04840at 1122.784 kb on + strand, within CA264_04840at 1122.784 kb on + strand, within CA264_04840at 1122.785 kb on - strand, within CA264_04840at 1122.785 kb on - strand, within CA264_04840at 1122.787 kb on + strand, within CA264_04840at 1122.787 kb on + strand, within CA264_04840at 1122.787 kb on + strand, within CA264_04840at 1122.788 kb on - strand, within CA264_04840at 1122.788 kb on - strand, within CA264_04840at 1122.809 kb on + strand, within CA264_04840at 1122.854 kb on - strand, within CA264_04840at 1122.876 kb on - strand, within CA264_04840at 1122.896 kb on - strand, within CA264_04840at 1122.915 kb on - strand, within CA264_04840at 1122.936 kb on + strand, within CA264_04840at 1122.997 kb on + strand, within CA264_04840at 1123.000 kb on - strand, within CA264_04840at 1123.009 kb on - strand, within CA264_04840at 1123.028 kb on + strand, within CA264_04840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
remove
1,119,268 + -0.1
1,119,360 + CA264_04830 0.17 -2.7
1,119,361 - CA264_04830 0.17 -1.6
1,119,371 + CA264_04830 0.19 -0.5
1,119,371 + CA264_04830 0.19 -0.1
1,119,372 - CA264_04830 0.19 -1.1
1,119,380 - CA264_04830 0.20 -1.6
1,119,444 - +0.9
1,119,444 - CA264_04830 0.32 -2.1
1,119,472 + CA264_04830 0.37 -0.1
1,119,473 - CA264_04830 0.37 -0.5
1,119,475 + CA264_04830 0.38 -0.8
1,119,475 + CA264_04830 0.38 -1.4
1,119,476 - CA264_04830 0.38 -1.0
1,119,565 + CA264_04830 0.54 -0.9
1,119,565 + CA264_04830 0.54 -1.8
1,119,652 + CA264_04830 0.70 +0.1
1,119,661 - CA264_04830 0.71 -3.1
1,119,795 + -2.7
1,119,818 + -1.9
1,119,818 + +0.3
1,119,819 - +1.0
1,119,819 - +0.3
1,119,820 + -0.1
1,119,823 + +0.7
1,119,824 - +1.0
1,119,836 - +4.2
1,119,853 + +0.4
1,119,858 - +2.8
1,119,874 + +1.0
1,119,874 + -0.7
1,119,879 + -1.9
1,119,908 + -0.8
1,119,954 - +2.3
1,119,954 - +1.8
1,120,005 + -2.0
1,120,005 + +0.5
1,120,005 + -1.2
1,120,006 - +2.6
1,120,006 - +0.6
1,120,121 + -0.4
1,120,167 + -0.0
1,120,191 + -0.5
1,120,228 + +0.4
1,120,229 - +1.7
1,120,249 - +1.8
1,120,249 - +2.9
1,120,250 + -0.4
1,120,251 - -0.6
1,120,263 + +0.4
1,120,264 - +1.7
1,120,296 + -0.1
1,120,297 - +2.7
1,120,406 - CA264_04835 0.12 +1.0
1,120,478 + CA264_04835 0.15 +0.4
1,120,487 + CA264_04835 0.16 -1.7
1,120,506 + CA264_04835 0.17 +0.0
1,120,526 + CA264_04835 0.18 +0.3
1,120,527 - CA264_04835 0.18 +1.2
1,120,575 + CA264_04835 0.21 -1.3
1,120,761 + CA264_04835 0.30 -0.4
1,120,777 + CA264_04835 0.31 +0.1
1,120,777 + CA264_04835 0.31 -0.7
1,120,781 + CA264_04835 0.31 -0.3
1,120,781 + CA264_04835 0.31 +0.7
1,120,782 - CA264_04835 0.31 +0.2
1,120,782 - CA264_04835 0.31 +1.8
1,120,782 - CA264_04835 0.31 +0.4
1,120,812 - CA264_04835 0.33 +0.4
1,120,883 + CA264_04835 0.37 -0.2
1,120,883 + CA264_04835 0.37 -0.6
1,120,884 - CA264_04835 0.37 -1.5
1,120,886 - CA264_04835 0.37 +1.3
1,120,893 + CA264_04835 0.37 -0.3
1,120,894 - CA264_04835 0.37 +1.2
1,120,897 + CA264_04835 0.37 -1.0
1,120,898 - CA264_04835 0.37 -1.9
1,120,899 + CA264_04835 0.37 +0.8
1,120,899 + CA264_04835 0.37 +0.0
1,120,899 + CA264_04835 0.37 +0.1
1,120,906 + CA264_04835 0.38 +0.4
1,120,907 - CA264_04835 0.38 +0.8
1,120,952 - CA264_04835 0.40 +4.1
1,120,973 + CA264_04835 0.41 +0.0
1,121,005 - CA264_04835 0.43 +1.0
1,121,103 + CA264_04835 0.48 -0.6
1,121,110 - CA264_04835 0.48 -0.6
1,121,115 + CA264_04835 0.49 +0.4
1,121,188 - CA264_04835 0.52 +1.3
1,121,188 - CA264_04835 0.52 +1.5
1,121,226 + CA264_04835 0.54 -0.0
1,121,260 - CA264_04835 0.56 +0.5
1,121,281 - CA264_04835 0.57 +0.8
1,121,332 - CA264_04835 0.60 +0.9
1,121,345 - CA264_04835 0.60 +0.5
1,121,479 + CA264_04835 0.67 +0.9
1,121,479 + CA264_04835 0.67 +0.2
1,121,479 + CA264_04835 0.67 -0.6
1,121,480 - CA264_04835 0.67 +0.4
1,121,632 + CA264_04835 0.75 +0.4
1,121,701 + CA264_04835 0.79 -1.8
1,121,701 + CA264_04835 0.79 +0.6
1,121,702 - CA264_04835 0.79 +0.4
1,121,703 + CA264_04835 0.79 -1.4
1,121,737 - CA264_04835 0.81 +1.2
1,121,741 - CA264_04835 0.81 +0.4
1,122,037 - +1.7
1,122,037 - +1.1
1,122,037 - +0.6
1,122,130 + -2.5
1,122,137 - -0.7
1,122,205 + -0.3
1,122,215 + +0.4
1,122,288 + -0.9
1,122,400 + CA264_04840 0.13 -0.6
1,122,401 - CA264_04840 0.13 -1.6
1,122,401 - CA264_04840 0.13 -1.7
1,122,437 + CA264_04840 0.17 -1.1
1,122,437 + CA264_04840 0.17 +0.3
1,122,437 + CA264_04840 0.17 +1.1
1,122,438 - CA264_04840 0.18 -2.9
1,122,454 + CA264_04840 0.20 -0.8
1,122,454 + CA264_04840 0.20 -1.1
1,122,456 + CA264_04840 0.20 -0.5
1,122,487 - CA264_04840 0.23 +0.1
1,122,648 - CA264_04840 0.42 -0.3
1,122,648 - CA264_04840 0.42 -0.4
1,122,691 - CA264_04840 0.48 -0.8
1,122,726 + CA264_04840 0.52 -1.1
1,122,726 + CA264_04840 0.52 +0.1
1,122,726 + CA264_04840 0.52 +0.4
1,122,726 + CA264_04840 0.52 -0.2
1,122,727 - CA264_04840 0.52 -1.3
1,122,727 - CA264_04840 0.52 -1.1
1,122,727 - CA264_04840 0.52 -0.3
1,122,727 - CA264_04840 0.52 +0.3
1,122,728 + CA264_04840 0.52 -0.8
1,122,728 + CA264_04840 0.52 +0.4
1,122,733 + CA264_04840 0.52 -1.4
1,122,767 + CA264_04840 0.57 +0.9
1,122,767 + CA264_04840 0.57 +0.1
1,122,768 - CA264_04840 0.57 +0.6
1,122,768 - CA264_04840 0.57 -0.1
1,122,768 - CA264_04840 0.57 +0.4
1,122,784 + CA264_04840 0.59 -1.8
1,122,784 + CA264_04840 0.59 +0.3
1,122,785 - CA264_04840 0.59 -1.4
1,122,785 - CA264_04840 0.59 -0.2
1,122,787 + CA264_04840 0.59 -0.7
1,122,787 + CA264_04840 0.59 -0.6
1,122,787 + CA264_04840 0.59 -0.5
1,122,788 - CA264_04840 0.59 -0.8
1,122,788 - CA264_04840 0.59 -0.5
1,122,809 + CA264_04840 0.61 -0.1
1,122,854 - CA264_04840 0.67 -0.3
1,122,876 - CA264_04840 0.69 -1.5
1,122,896 - CA264_04840 0.72 -1.2
1,122,915 - CA264_04840 0.74 -0.4
1,122,936 + CA264_04840 0.76 +1.4
1,122,997 + CA264_04840 0.84 -0.4
1,123,000 - CA264_04840 0.84 -0.4
1,123,009 - CA264_04840 0.85 -0.4
1,123,028 + CA264_04840 0.87 -0.2

Or see this region's nucleotide sequence