Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04200

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04195 and CA264_04200 are separated by 436 nucleotidesCA264_04200 and CA264_04205 are separated by 379 nucleotides CA264_04195: CA264_04195 - peptidase M16, at 968,357 to 969,760 _04195 CA264_04200: CA264_04200 - cation-efflux pump, at 970,197 to 971,090 _04200 CA264_04205: CA264_04205 - hypothetical protein, at 971,470 to 972,045 _04205 Position (kb) 970 971 972Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 969.314 kb on + strand, within CA264_04195at 969.320 kb on + strand, within CA264_04195at 969.320 kb on + strand, within CA264_04195at 969.320 kb on + strand, within CA264_04195at 969.321 kb on - strand, within CA264_04195at 969.321 kb on - strand, within CA264_04195at 969.350 kb on + strand, within CA264_04195at 969.351 kb on - strand, within CA264_04195at 969.488 kb on + strand, within CA264_04195at 969.489 kb on - strand, within CA264_04195at 969.608 kb on + strand, within CA264_04195at 969.609 kb on - strand, within CA264_04195at 969.609 kb on - strand, within CA264_04195at 969.650 kb on + strandat 969.758 kb on + strandat 969.845 kb on - strandat 969.857 kb on - strandat 969.873 kb on + strandat 969.874 kb on - strandat 969.875 kb on + strandat 969.880 kb on - strandat 969.883 kb on + strandat 969.883 kb on + strandat 969.884 kb on - strandat 969.895 kb on - strandat 969.898 kb on + strandat 969.921 kb on - strandat 969.932 kb on + strandat 969.932 kb on + strandat 969.933 kb on - strandat 969.942 kb on - strandat 969.990 kb on - strandat 969.995 kb on + strandat 969.997 kb on + strandat 969.997 kb on + strandat 969.997 kb on + strandat 969.998 kb on - strandat 969.998 kb on - strandat 970.002 kb on - strandat 970.199 kb on - strandat 970.204 kb on - strandat 970.263 kb on + strandat 970.263 kb on + strandat 970.263 kb on + strandat 970.263 kb on + strandat 970.263 kb on + strandat 970.264 kb on - strandat 970.353 kb on + strand, within CA264_04200at 970.383 kb on + strand, within CA264_04200at 970.402 kb on - strand, within CA264_04200at 970.492 kb on + strand, within CA264_04200at 970.508 kb on + strand, within CA264_04200at 970.521 kb on + strand, within CA264_04200at 970.522 kb on - strand, within CA264_04200at 970.588 kb on - strand, within CA264_04200at 970.739 kb on - strand, within CA264_04200at 970.777 kb on - strand, within CA264_04200at 970.777 kb on - strand, within CA264_04200at 970.777 kb on - strand, within CA264_04200at 970.778 kb on + strand, within CA264_04200at 970.794 kb on + strand, within CA264_04200at 970.794 kb on + strand, within CA264_04200at 970.795 kb on - strand, within CA264_04200at 970.795 kb on - strand, within CA264_04200at 970.798 kb on - strand, within CA264_04200at 970.922 kb on + strand, within CA264_04200at 970.923 kb on - strand, within CA264_04200at 970.928 kb on + strand, within CA264_04200at 970.928 kb on + strand, within CA264_04200at 970.944 kb on - strand, within CA264_04200at 971.040 kb on - strandat 971.107 kb on + strandat 971.142 kb on - strandat 971.143 kb on + strandat 971.144 kb on - strandat 971.235 kb on + strandat 971.291 kb on + strandat 971.291 kb on + strandat 971.324 kb on + strandat 971.325 kb on - strandat 971.425 kb on - strandat 971.431 kb on + strandat 971.432 kb on - strandat 971.478 kb on + strandat 971.561 kb on + strand, within CA264_04205at 971.561 kb on + strand, within CA264_04205at 971.561 kb on + strand, within CA264_04205at 971.562 kb on - strand, within CA264_04205at 971.562 kb on - strand, within CA264_04205at 971.562 kb on - strand, within CA264_04205at 971.562 kb on - strand, within CA264_04205at 971.574 kb on + strand, within CA264_04205at 971.590 kb on + strand, within CA264_04205at 971.592 kb on + strand, within CA264_04205at 971.615 kb on + strand, within CA264_04205at 971.658 kb on - strand, within CA264_04205at 971.698 kb on + strand, within CA264_04205at 971.699 kb on - strand, within CA264_04205at 971.712 kb on + strand, within CA264_04205at 971.713 kb on - strand, within CA264_04205at 971.859 kb on + strand, within CA264_04205at 971.860 kb on - strand, within CA264_04205at 971.921 kb on + strand, within CA264_04205at 971.922 kb on - strand, within CA264_04205at 972.050 kb on + strandat 972.050 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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969,314 + CA264_04195 0.68 -0.8
969,320 + CA264_04195 0.69 -1.5
969,320 + CA264_04195 0.69 -1.6
969,320 + CA264_04195 0.69 -1.6
969,321 - CA264_04195 0.69 -0.1
969,321 - CA264_04195 0.69 -0.0
969,350 + CA264_04195 0.71 -2.8
969,351 - CA264_04195 0.71 -0.1
969,488 + CA264_04195 0.81 -1.4
969,489 - CA264_04195 0.81 -1.1
969,608 + CA264_04195 0.89 -2.4
969,609 - CA264_04195 0.89 +0.0
969,609 - CA264_04195 0.89 +0.2
969,650 + -1.2
969,758 + -0.8
969,845 - +0.7
969,857 - +0.9
969,873 + -1.1
969,874 - +0.8
969,875 + -0.9
969,880 - +1.3
969,883 + -1.5
969,883 + -2.3
969,884 - +0.4
969,895 - -0.5
969,898 + -2.8
969,921 - +0.2
969,932 + -1.4
969,932 + -1.6
969,933 - -0.3
969,942 - +0.3
969,990 - -0.4
969,995 + -1.7
969,997 + -1.7
969,997 + -2.3
969,997 + -0.5
969,998 - +1.4
969,998 - -0.8
970,002 - +0.6
970,199 - -0.7
970,204 - -1.5
970,263 + +0.2
970,263 + +0.1
970,263 + -0.8
970,263 + -0.3
970,263 + +0.8
970,264 - -1.7
970,353 + CA264_04200 0.17 +1.1
970,383 + CA264_04200 0.21 -1.0
970,402 - CA264_04200 0.23 -1.3
970,492 + CA264_04200 0.33 -0.1
970,508 + CA264_04200 0.35 -0.6
970,521 + CA264_04200 0.36 -0.1
970,522 - CA264_04200 0.36 -2.7
970,588 - CA264_04200 0.44 -1.7
970,739 - CA264_04200 0.61 -1.7
970,777 - CA264_04200 0.65 -0.3
970,777 - CA264_04200 0.65 +0.7
970,777 - CA264_04200 0.65 -0.5
970,778 + CA264_04200 0.65 -0.5
970,794 + CA264_04200 0.67 -1.1
970,794 + CA264_04200 0.67 -0.4
970,795 - CA264_04200 0.67 -0.0
970,795 - CA264_04200 0.67 -1.3
970,798 - CA264_04200 0.67 -1.4
970,922 + CA264_04200 0.81 +0.4
970,923 - CA264_04200 0.81 +0.4
970,928 + CA264_04200 0.82 -1.3
970,928 + CA264_04200 0.82 -1.1
970,944 - CA264_04200 0.84 +1.4
971,040 - -1.0
971,107 + -0.7
971,142 - +0.5
971,143 + -1.1
971,144 - +0.1
971,235 + -0.1
971,291 + -0.6
971,291 + +1.9
971,324 + -0.3
971,325 - -0.6
971,425 - -0.8
971,431 + -0.5
971,432 - -0.8
971,478 + +0.1
971,561 + CA264_04205 0.16 -0.3
971,561 + CA264_04205 0.16 -2.0
971,561 + CA264_04205 0.16 +0.7
971,562 - CA264_04205 0.16 -0.2
971,562 - CA264_04205 0.16 -0.2
971,562 - CA264_04205 0.16 +0.9
971,562 - CA264_04205 0.16 -0.1
971,574 + CA264_04205 0.18 -0.8
971,590 + CA264_04205 0.21 +0.2
971,592 + CA264_04205 0.21 +0.4
971,615 + CA264_04205 0.25 +0.3
971,658 - CA264_04205 0.33 -0.6
971,698 + CA264_04205 0.40 +0.1
971,699 - CA264_04205 0.40 -0.0
971,712 + CA264_04205 0.42 -0.0
971,713 - CA264_04205 0.42 -1.1
971,859 + CA264_04205 0.68 +0.3
971,860 - CA264_04205 0.68 +1.4
971,921 + CA264_04205 0.78 +0.5
971,922 - CA264_04205 0.78 +0.8
972,050 + +0.3
972,050 + -0.3

Or see this region's nucleotide sequence