Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02290

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02280 and CA264_02285 are separated by 158 nucleotidesCA264_02285 and CA264_02290 are separated by 295 nucleotidesCA264_02290 and CA264_02295 are separated by 0 nucleotidesCA264_02295 and CA264_02300 overlap by 4 nucleotides CA264_02280: CA264_02280 - ATP-binding protein, at 529,087 to 530,442 _02280 CA264_02285: CA264_02285 - thiol reductase thioredoxin, at 530,601 to 530,906 _02285 CA264_02290: CA264_02290 - hypothetical protein, at 531,202 to 531,528 _02290 CA264_02295: CA264_02295 - hypothetical protein, at 531,529 to 532,191 _02295 CA264_02300: CA264_02300 - hypothetical protein, at 532,188 to 533,063 _02300 Position (kb) 531 532Strain fitness (log2 ratio) -2 -1 0 1at 530.349 kb on - strandat 530.379 kb on + strandat 530.380 kb on - strandat 530.380 kb on - strandat 530.408 kb on + strandat 530.455 kb on + strandat 530.455 kb on + strandat 530.492 kb on - strandat 530.504 kb on + strandat 530.551 kb on + strandat 530.588 kb on + strandat 530.588 kb on + strandat 530.589 kb on - strandat 530.589 kb on - strandat 530.594 kb on + strandat 530.595 kb on - strandat 530.595 kb on - strandat 530.714 kb on + strand, within CA264_02285at 530.745 kb on + strand, within CA264_02285at 530.745 kb on + strand, within CA264_02285at 530.745 kb on + strand, within CA264_02285at 530.745 kb on + strand, within CA264_02285at 530.745 kb on + strand, within CA264_02285at 530.752 kb on - strand, within CA264_02285at 530.766 kb on + strand, within CA264_02285at 530.766 kb on + strand, within CA264_02285at 530.767 kb on - strand, within CA264_02285at 530.791 kb on - strand, within CA264_02285at 530.842 kb on + strand, within CA264_02285at 530.909 kb on + strandat 530.909 kb on + strandat 530.910 kb on - strandat 530.929 kb on + strandat 530.930 kb on - strandat 530.935 kb on + strandat 530.955 kb on + strandat 530.955 kb on + strandat 530.955 kb on + strandat 530.955 kb on + strandat 530.955 kb on + strandat 530.955 kb on + strandat 530.956 kb on - strandat 530.956 kb on - strandat 530.956 kb on - strandat 530.997 kb on - strandat 531.016 kb on - strandat 531.043 kb on - strandat 531.131 kb on - strandat 531.131 kb on - strandat 531.201 kb on + strandat 531.235 kb on - strand, within CA264_02290at 531.237 kb on - strand, within CA264_02290at 531.242 kb on + strand, within CA264_02290at 531.243 kb on - strand, within CA264_02290at 531.243 kb on - strand, within CA264_02290at 531.280 kb on - strand, within CA264_02290at 531.386 kb on - strand, within CA264_02290at 531.389 kb on - strand, within CA264_02290at 531.389 kb on - strand, within CA264_02290at 531.519 kb on - strandat 531.581 kb on - strandat 531.631 kb on - strand, within CA264_02295at 531.631 kb on - strand, within CA264_02295at 531.631 kb on - strand, within CA264_02295at 531.653 kb on + strand, within CA264_02295at 531.659 kb on + strand, within CA264_02295at 531.660 kb on - strand, within CA264_02295at 531.660 kb on - strand, within CA264_02295at 531.660 kb on - strand, within CA264_02295at 531.660 kb on - strand, within CA264_02295at 531.661 kb on + strand, within CA264_02295at 531.662 kb on - strand, within CA264_02295at 531.662 kb on - strand, within CA264_02295at 531.723 kb on + strand, within CA264_02295at 531.723 kb on + strand, within CA264_02295at 531.724 kb on - strand, within CA264_02295at 531.724 kb on - strand, within CA264_02295at 531.744 kb on + strand, within CA264_02295at 531.744 kb on + strand, within CA264_02295at 531.744 kb on + strand, within CA264_02295at 531.744 kb on + strand, within CA264_02295at 531.748 kb on + strand, within CA264_02295at 531.748 kb on + strand, within CA264_02295at 531.749 kb on - strand, within CA264_02295at 531.749 kb on - strand, within CA264_02295at 531.749 kb on - strand, within CA264_02295at 531.784 kb on + strand, within CA264_02295at 531.785 kb on - strand, within CA264_02295at 531.798 kb on + strand, within CA264_02295at 531.812 kb on + strand, within CA264_02295at 531.865 kb on + strand, within CA264_02295at 531.866 kb on - strand, within CA264_02295at 531.918 kb on - strand, within CA264_02295at 531.953 kb on - strand, within CA264_02295at 531.989 kb on - strand, within CA264_02295at 532.012 kb on - strand, within CA264_02295at 532.014 kb on - strand, within CA264_02295at 532.014 kb on - strand, within CA264_02295at 532.014 kb on - strand, within CA264_02295at 532.017 kb on + strand, within CA264_02295at 532.017 kb on + strand, within CA264_02295at 532.017 kb on + strand, within CA264_02295at 532.029 kb on + strand, within CA264_02295at 532.030 kb on - strand, within CA264_02295at 532.030 kb on - strand, within CA264_02295at 532.063 kb on - strand, within CA264_02295at 532.063 kb on - strand, within CA264_02295at 532.071 kb on + strand, within CA264_02295at 532.093 kb on + strand, within CA264_02295at 532.093 kb on + strand, within CA264_02295at 532.093 kb on + strand, within CA264_02295at 532.139 kb on + strandat 532.139 kb on + strandat 532.144 kb on + strandat 532.210 kb on + strandat 532.210 kb on + strandat 532.210 kb on + strandat 532.211 kb on - strandat 532.352 kb on + strand, within CA264_02300at 532.353 kb on - strand, within CA264_02300at 532.432 kb on + strand, within CA264_02300at 532.465 kb on + strand, within CA264_02300at 532.523 kb on - strand, within CA264_02300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
remove
530,349 - +1.2
530,379 + +0.1
530,380 - -0.2
530,380 - -0.4
530,408 + +0.4
530,455 + -1.1
530,455 + -0.4
530,492 - +0.2
530,504 + -1.8
530,551 + -0.7
530,588 + +0.3
530,588 + -0.3
530,589 - +0.4
530,589 - +0.8
530,594 + +0.6
530,595 - +0.8
530,595 - -0.3
530,714 + CA264_02285 0.37 +1.5
530,745 + CA264_02285 0.47 -0.9
530,745 + CA264_02285 0.47 -0.4
530,745 + CA264_02285 0.47 -0.8
530,745 + CA264_02285 0.47 -1.1
530,745 + CA264_02285 0.47 -2.2
530,752 - CA264_02285 0.49 -0.5
530,766 + CA264_02285 0.54 -0.5
530,766 + CA264_02285 0.54 -0.7
530,767 - CA264_02285 0.54 +0.3
530,791 - CA264_02285 0.62 -1.2
530,842 + CA264_02285 0.79 -2.0
530,909 + +0.1
530,909 + -0.9
530,910 - -0.2
530,929 + +1.3
530,930 - +0.8
530,935 + +1.0
530,955 + -1.0
530,955 + -0.3
530,955 + -0.4
530,955 + -1.9
530,955 + -0.6
530,955 + -2.6
530,956 - +0.2
530,956 - +0.9
530,956 - +0.6
530,997 - +0.6
531,016 - +0.5
531,043 - +0.0
531,131 - +0.5
531,131 - +1.7
531,201 + -0.2
531,235 - CA264_02290 0.10 +0.6
531,237 - CA264_02290 0.11 +0.2
531,242 + CA264_02290 0.12 -0.3
531,243 - CA264_02290 0.13 -0.1
531,243 - CA264_02290 0.13 +0.6
531,280 - CA264_02290 0.24 +0.4
531,386 - CA264_02290 0.56 +0.6
531,389 - CA264_02290 0.57 +1.3
531,389 - CA264_02290 0.57 -0.1
531,519 - +0.5
531,581 - -0.3
531,631 - CA264_02295 0.15 -0.6
531,631 - CA264_02295 0.15 +0.5
531,631 - CA264_02295 0.15 +0.2
531,653 + CA264_02295 0.19 +0.2
531,659 + CA264_02295 0.20 -0.3
531,660 - CA264_02295 0.20 -1.3
531,660 - CA264_02295 0.20 -0.9
531,660 - CA264_02295 0.20 +0.7
531,660 - CA264_02295 0.20 -1.7
531,661 + CA264_02295 0.20 -1.0
531,662 - CA264_02295 0.20 -1.0
531,662 - CA264_02295 0.20 -2.1
531,723 + CA264_02295 0.29 -0.3
531,723 + CA264_02295 0.29 +0.3
531,724 - CA264_02295 0.29 -0.6
531,724 - CA264_02295 0.29 -0.9
531,744 + CA264_02295 0.32 -1.8
531,744 + CA264_02295 0.32 -0.6
531,744 + CA264_02295 0.32 +0.5
531,744 + CA264_02295 0.32 -1.5
531,748 + CA264_02295 0.33 -1.6
531,748 + CA264_02295 0.33 -0.1
531,749 - CA264_02295 0.33 -1.3
531,749 - CA264_02295 0.33 -0.5
531,749 - CA264_02295 0.33 -1.3
531,784 + CA264_02295 0.38 +0.3
531,785 - CA264_02295 0.39 -1.4
531,798 + CA264_02295 0.41 -1.3
531,812 + CA264_02295 0.43 +0.0
531,865 + CA264_02295 0.51 -0.3
531,866 - CA264_02295 0.51 -1.6
531,918 - CA264_02295 0.59 +0.7
531,953 - CA264_02295 0.64 -0.6
531,989 - CA264_02295 0.69 +0.6
532,012 - CA264_02295 0.73 -1.2
532,014 - CA264_02295 0.73 -1.4
532,014 - CA264_02295 0.73 -1.3
532,014 - CA264_02295 0.73 +1.5
532,017 + CA264_02295 0.74 -0.5
532,017 + CA264_02295 0.74 -0.2
532,017 + CA264_02295 0.74 +0.2
532,029 + CA264_02295 0.75 -0.5
532,030 - CA264_02295 0.76 -1.8
532,030 - CA264_02295 0.76 -1.0
532,063 - CA264_02295 0.81 -1.0
532,063 - CA264_02295 0.81 +0.7
532,071 + CA264_02295 0.82 -0.2
532,093 + CA264_02295 0.85 -1.0
532,093 + CA264_02295 0.85 -0.3
532,093 + CA264_02295 0.85 -1.1
532,139 + +0.6
532,139 + -1.2
532,144 + -0.3
532,210 + -0.4
532,210 + -0.4
532,210 + -0.3
532,211 - -0.5
532,352 + CA264_02300 0.19 -1.3
532,353 - CA264_02300 0.19 -1.2
532,432 + CA264_02300 0.28 -0.3
532,465 + CA264_02300 0.32 -1.5
532,523 - CA264_02300 0.38 +1.1

Or see this region's nucleotide sequence