Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01480

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01475 and CA264_01480 are separated by 1 nucleotidesCA264_01480 and CA264_01485 are separated by 90 nucleotidesCA264_01485 and CA264_01490 are separated by 29 nucleotides CA264_01475: CA264_01475 - hypothetical protein, at 349,636 to 351,642 _01475 CA264_01480: CA264_01480 - dihydroorotase, at 351,644 to 352,909 _01480 CA264_01485: CA264_01485 - hypothetical protein, at 353,000 to 353,479 _01485 CA264_01490: CA264_01490 - DUF4199 domain-containing protein, at 353,509 to 354,027 _01490 Position (kb) 351 352 353Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 350.671 kb on + strand, within CA264_01475at 350.672 kb on - strand, within CA264_01475at 350.679 kb on + strand, within CA264_01475at 350.687 kb on + strand, within CA264_01475at 350.692 kb on + strand, within CA264_01475at 350.693 kb on - strand, within CA264_01475at 350.724 kb on - strand, within CA264_01475at 350.735 kb on + strand, within CA264_01475at 350.736 kb on - strand, within CA264_01475at 350.836 kb on + strand, within CA264_01475at 350.837 kb on - strand, within CA264_01475at 350.907 kb on + strand, within CA264_01475at 350.929 kb on - strand, within CA264_01475at 351.000 kb on + strand, within CA264_01475at 351.000 kb on + strand, within CA264_01475at 351.000 kb on + strand, within CA264_01475at 351.037 kb on + strand, within CA264_01475at 351.038 kb on - strand, within CA264_01475at 351.039 kb on + strand, within CA264_01475at 351.040 kb on - strand, within CA264_01475at 351.184 kb on + strand, within CA264_01475at 351.185 kb on - strand, within CA264_01475at 351.209 kb on - strand, within CA264_01475at 351.225 kb on + strand, within CA264_01475at 351.225 kb on + strand, within CA264_01475at 351.226 kb on - strand, within CA264_01475at 351.271 kb on + strand, within CA264_01475at 351.271 kb on + strand, within CA264_01475at 351.272 kb on - strand, within CA264_01475at 351.272 kb on - strand, within CA264_01475at 351.332 kb on + strand, within CA264_01475at 351.332 kb on + strand, within CA264_01475at 351.339 kb on + strand, within CA264_01475at 351.402 kb on - strand, within CA264_01475at 351.421 kb on + strand, within CA264_01475at 351.451 kb on + strandat 351.452 kb on - strandat 351.452 kb on - strandat 351.453 kb on + strandat 351.508 kb on + strandat 351.509 kb on - strandat 351.580 kb on + strandat 351.580 kb on + strandat 351.591 kb on - strandat 351.651 kb on + strandat 351.651 kb on + strandat 351.670 kb on + strandat 351.670 kb on + strandat 351.731 kb on - strandat 351.744 kb on + strandat 351.958 kb on + strand, within CA264_01480at 351.959 kb on - strand, within CA264_01480at 351.963 kb on - strand, within CA264_01480at 352.470 kb on + strand, within CA264_01480at 352.470 kb on + strand, within CA264_01480at 352.511 kb on - strand, within CA264_01480at 352.821 kb on - strandat 352.910 kb on + strandat 352.913 kb on - strandat 352.913 kb on - strandat 352.916 kb on + strandat 352.916 kb on + strandat 352.918 kb on + strandat 352.918 kb on + strandat 352.919 kb on - strandat 352.969 kb on + strandat 352.969 kb on + strandat 352.970 kb on - strandat 353.002 kb on - strandat 353.041 kb on - strandat 353.067 kb on - strand, within CA264_01485at 353.100 kb on - strand, within CA264_01485at 353.141 kb on + strand, within CA264_01485at 353.143 kb on + strand, within CA264_01485at 353.150 kb on + strand, within CA264_01485at 353.250 kb on + strand, within CA264_01485at 353.273 kb on - strand, within CA264_01485at 353.331 kb on + strand, within CA264_01485at 353.395 kb on + strand, within CA264_01485at 353.395 kb on + strand, within CA264_01485at 353.396 kb on - strand, within CA264_01485at 353.464 kb on - strandat 353.477 kb on + strandat 353.477 kb on + strandat 353.540 kb on + strandat 353.541 kb on - strandat 353.547 kb on - strandat 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.593 kb on - strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.701 kb on + strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.707 kb on + strand, within CA264_01490at 353.708 kb on - strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.710 kb on - strand, within CA264_01490at 353.710 kb on - strand, within CA264_01490at 353.782 kb on - strand, within CA264_01490at 353.782 kb on - strand, within CA264_01490at 353.815 kb on + strand, within CA264_01490

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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350,671 + CA264_01475 0.52 +0.3
350,672 - CA264_01475 0.52 -0.3
350,679 + CA264_01475 0.52 -3.2
350,687 + CA264_01475 0.52 +1.1
350,692 + CA264_01475 0.53 -1.5
350,693 - CA264_01475 0.53 -1.1
350,724 - CA264_01475 0.54 -0.7
350,735 + CA264_01475 0.55 -1.4
350,736 - CA264_01475 0.55 -1.1
350,836 + CA264_01475 0.60 -1.4
350,837 - CA264_01475 0.60 -1.4
350,907 + CA264_01475 0.63 -2.4
350,929 - CA264_01475 0.64 -3.0
351,000 + CA264_01475 0.68 -1.6
351,000 + CA264_01475 0.68 -2.5
351,000 + CA264_01475 0.68 -1.6
351,037 + CA264_01475 0.70 -0.2
351,038 - CA264_01475 0.70 -0.4
351,039 + CA264_01475 0.70 -0.1
351,040 - CA264_01475 0.70 -1.2
351,184 + CA264_01475 0.77 -1.9
351,185 - CA264_01475 0.77 -0.9
351,209 - CA264_01475 0.78 +0.8
351,225 + CA264_01475 0.79 -1.3
351,225 + CA264_01475 0.79 -1.4
351,226 - CA264_01475 0.79 -0.6
351,271 + CA264_01475 0.81 -2.2
351,271 + CA264_01475 0.81 -1.5
351,272 - CA264_01475 0.82 -1.9
351,272 - CA264_01475 0.82 -1.9
351,332 + CA264_01475 0.85 -1.6
351,332 + CA264_01475 0.85 -2.2
351,339 + CA264_01475 0.85 +0.1
351,402 - CA264_01475 0.88 -0.5
351,421 + CA264_01475 0.89 -0.7
351,451 + -1.1
351,452 - -1.2
351,452 - -0.5
351,453 + -1.8
351,508 + -2.8
351,509 - +1.9
351,580 + -2.0
351,580 + -2.4
351,591 - -1.0
351,651 + -1.5
351,651 + -0.9
351,670 + -0.3
351,670 + -1.4
351,731 - +1.1
351,744 + -0.8
351,958 + CA264_01480 0.25 -1.9
351,959 - CA264_01480 0.25 -0.4
351,963 - CA264_01480 0.25 -2.1
352,470 + CA264_01480 0.65 -2.3
352,470 + CA264_01480 0.65 -3.1
352,511 - CA264_01480 0.68 +1.6
352,821 - -1.3
352,910 + -2.5
352,913 - -1.1
352,913 - -2.3
352,916 + -3.0
352,916 + -3.0
352,918 + -2.4
352,918 + -1.7
352,919 - -1.8
352,969 + -1.2
352,969 + -0.3
352,970 - -0.0
353,002 - -1.7
353,041 - -0.2
353,067 - CA264_01485 0.14 -0.5
353,100 - CA264_01485 0.21 -0.8
353,141 + CA264_01485 0.29 -1.6
353,143 + CA264_01485 0.30 -0.2
353,150 + CA264_01485 0.31 -3.6
353,250 + CA264_01485 0.52 -1.7
353,273 - CA264_01485 0.57 -0.9
353,331 + CA264_01485 0.69 +0.1
353,395 + CA264_01485 0.82 -1.8
353,395 + CA264_01485 0.82 -1.2
353,396 - CA264_01485 0.82 -2.1
353,464 - -2.1
353,477 + -2.5
353,477 + -2.7
353,540 + -2.0
353,541 - +0.9
353,547 - -0.7
353,592 + CA264_01490 0.16 -2.9
353,592 + CA264_01490 0.16 -2.5
353,592 + CA264_01490 0.16 -1.6
353,592 + CA264_01490 0.16 -0.7
353,593 - CA264_01490 0.16 +0.2
353,594 + CA264_01490 0.16 -0.3
353,594 + CA264_01490 0.16 +0.9
353,594 + CA264_01490 0.16 -1.8
353,701 + CA264_01490 0.37 -4.4
353,702 - CA264_01490 0.37 -1.1
353,702 - CA264_01490 0.37 -1.9
353,702 - CA264_01490 0.37 -0.1
353,707 + CA264_01490 0.38 -2.4
353,708 - CA264_01490 0.38 -1.4
353,709 + CA264_01490 0.39 -1.2
353,709 + CA264_01490 0.39 -3.6
353,709 + CA264_01490 0.39 -1.9
353,709 + CA264_01490 0.39 -4.9
353,709 + CA264_01490 0.39 -2.1
353,710 - CA264_01490 0.39 -0.9
353,710 - CA264_01490 0.39 -1.4
353,782 - CA264_01490 0.53 -0.5
353,782 - CA264_01490 0.53 +0.9
353,815 + CA264_01490 0.59 -3.0

Or see this region's nucleotide sequence