Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00170

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_00160 and CA264_00165 are separated by 9 nucleotidesCA264_00165 and CA264_00170 overlap by 1 nucleotidesCA264_00170 and CA264_00175 are separated by 57 nucleotides CA264_00160: CA264_00160 - hypothetical protein, at 38,911 to 41,952 _00160 CA264_00165: CA264_00165 - macrolide ABC transporter ATP-binding protein, at 41,962 to 42,690 _00165 CA264_00170: CA264_00170 - ATP:cob(I)alamin adenosyltransferase, at 42,690 to 43,244 _00170 CA264_00175: CA264_00175 - branched chain amino acid aminotransferase, at 43,302 to 44,375 _00175 Position (kb) 42 43 44Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 41.707 kb on + strandat 41.708 kb on - strandat 41.708 kb on - strandat 41.710 kb on - strandat 41.732 kb on - strandat 41.754 kb on + strandat 41.758 kb on + strandat 41.759 kb on - strandat 41.782 kb on + strandat 41.792 kb on - strandat 41.878 kb on + strandat 41.879 kb on - strandat 41.879 kb on - strandat 41.879 kb on - strandat 41.988 kb on + strandat 42.034 kb on - strandat 42.112 kb on - strand, within CA264_00165at 42.246 kb on + strand, within CA264_00165at 42.247 kb on - strand, within CA264_00165at 42.439 kb on - strand, within CA264_00165at 42.481 kb on - strand, within CA264_00165at 42.502 kb on + strand, within CA264_00165at 42.502 kb on + strand, within CA264_00165at 42.503 kb on - strand, within CA264_00165at 42.586 kb on + strand, within CA264_00165at 42.587 kb on - strand, within CA264_00165at 42.704 kb on + strandat 42.734 kb on + strandat 42.736 kb on + strandat 42.736 kb on + strandat 42.737 kb on - strandat 42.737 kb on - strandat 42.737 kb on - strandat 42.766 kb on + strand, within CA264_00170at 42.767 kb on - strand, within CA264_00170at 42.780 kb on + strand, within CA264_00170at 42.868 kb on + strand, within CA264_00170at 42.869 kb on - strand, within CA264_00170at 42.869 kb on - strand, within CA264_00170at 42.980 kb on - strand, within CA264_00170at 42.986 kb on + strand, within CA264_00170at 42.987 kb on - strand, within CA264_00170at 43.257 kb on + strandat 43.270 kb on - strandat 43.270 kb on - strandat 43.270 kb on - strandat 43.288 kb on - strandat 43.299 kb on - strandat 43.299 kb on - strandat 43.301 kb on + strandat 43.302 kb on - strandat 43.302 kb on - strandat 43.310 kb on - strandat 43.313 kb on + strandat 43.322 kb on + strandat 43.322 kb on + strandat 43.323 kb on - strandat 43.324 kb on + strandat 43.422 kb on + strand, within CA264_00175at 43.453 kb on + strand, within CA264_00175at 43.454 kb on - strand, within CA264_00175at 43.454 kb on - strand, within CA264_00175at 43.487 kb on + strand, within CA264_00175at 43.488 kb on - strand, within CA264_00175at 43.536 kb on + strand, within CA264_00175at 43.537 kb on - strand, within CA264_00175at 43.537 kb on - strand, within CA264_00175at 43.716 kb on + strand, within CA264_00175at 43.716 kb on + strand, within CA264_00175at 43.716 kb on + strand, within CA264_00175at 43.717 kb on - strand, within CA264_00175at 43.717 kb on - strand, within CA264_00175at 43.717 kb on - strand, within CA264_00175at 43.730 kb on + strand, within CA264_00175at 43.815 kb on + strand, within CA264_00175at 43.816 kb on - strand, within CA264_00175at 43.840 kb on + strand, within CA264_00175at 43.986 kb on + strand, within CA264_00175at 44.015 kb on - strand, within CA264_00175at 44.015 kb on - strand, within CA264_00175at 44.015 kb on - strand, within CA264_00175at 44.043 kb on - strand, within CA264_00175at 44.043 kb on - strand, within CA264_00175at 44.043 kb on - strand, within CA264_00175at 44.092 kb on + strand, within CA264_00175at 44.093 kb on - strand, within CA264_00175at 44.126 kb on - strand, within CA264_00175at 44.126 kb on - strand, within CA264_00175at 44.141 kb on - strand, within CA264_00175at 44.228 kb on - strand, within CA264_00175at 44.228 kb on - strand, within CA264_00175at 44.241 kb on + strand, within CA264_00175at 44.242 kb on - strand, within CA264_00175

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
remove
41,707 + -3.4
41,708 - -2.7
41,708 - -1.8
41,710 - -1.0
41,732 - -1.6
41,754 + -3.3
41,758 + -2.6
41,759 - -2.2
41,782 + +0.3
41,792 - -0.1
41,878 + -4.1
41,879 - -2.2
41,879 - -1.6
41,879 - -1.6
41,988 + -2.0
42,034 - +0.8
42,112 - CA264_00165 0.21 +0.7
42,246 + CA264_00165 0.39 -0.4
42,247 - CA264_00165 0.39 +2.3
42,439 - CA264_00165 0.65 -0.7
42,481 - CA264_00165 0.71 +0.2
42,502 + CA264_00165 0.74 -0.2
42,502 + CA264_00165 0.74 +1.7
42,503 - CA264_00165 0.74 +0.4
42,586 + CA264_00165 0.86 +0.2
42,587 - CA264_00165 0.86 -0.6
42,704 + -0.1
42,734 + -1.3
42,736 + -0.8
42,736 + -1.2
42,737 - +0.4
42,737 - +1.1
42,737 - +0.7
42,766 + CA264_00170 0.14 +0.7
42,767 - CA264_00170 0.14 +0.5
42,780 + CA264_00170 0.16 -3.4
42,868 + CA264_00170 0.32 -0.4
42,869 - CA264_00170 0.32 -0.1
42,869 - CA264_00170 0.32 +0.9
42,980 - CA264_00170 0.52 +0.1
42,986 + CA264_00170 0.53 -0.6
42,987 - CA264_00170 0.54 +0.1
43,257 + -0.0
43,270 - +2.4
43,270 - +1.1
43,270 - +0.2
43,288 - +1.9
43,299 - -0.5
43,299 - +0.3
43,301 + -2.5
43,302 - +0.9
43,302 - +1.1
43,310 - -0.2
43,313 + -0.4
43,322 + -1.2
43,322 + -0.8
43,323 - +3.0
43,324 + +1.3
43,422 + CA264_00175 0.11 -0.5
43,453 + CA264_00175 0.14 -1.1
43,454 - CA264_00175 0.14 +0.7
43,454 - CA264_00175 0.14 +1.1
43,487 + CA264_00175 0.17 -2.3
43,488 - CA264_00175 0.17 +1.0
43,536 + CA264_00175 0.22 -1.1
43,537 - CA264_00175 0.22 +1.9
43,537 - CA264_00175 0.22 +0.1
43,716 + CA264_00175 0.39 -2.0
43,716 + CA264_00175 0.39 -2.6
43,716 + CA264_00175 0.39 -0.7
43,717 - CA264_00175 0.39 +0.4
43,717 - CA264_00175 0.39 +0.8
43,717 - CA264_00175 0.39 +1.0
43,730 + CA264_00175 0.40 -1.1
43,815 + CA264_00175 0.48 -1.1
43,816 - CA264_00175 0.48 +1.3
43,840 + CA264_00175 0.50 -0.4
43,986 + CA264_00175 0.64 -1.6
44,015 - CA264_00175 0.66 +1.0
44,015 - CA264_00175 0.66 -0.9
44,015 - CA264_00175 0.66 +0.6
44,043 - CA264_00175 0.69 +0.5
44,043 - CA264_00175 0.69 +0.9
44,043 - CA264_00175 0.69 +0.1
44,092 + CA264_00175 0.74 -1.8
44,093 - CA264_00175 0.74 +0.5
44,126 - CA264_00175 0.77 +0.4
44,126 - CA264_00175 0.77 +0.8
44,141 - CA264_00175 0.78 +0.9
44,228 - CA264_00175 0.86 +1.0
44,228 - CA264_00175 0.86 +0.3
44,241 + CA264_00175 0.87 -2.3
44,242 - CA264_00175 0.88 +0.2

Or see this region's nucleotide sequence