Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09535

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS09530 and ABIE41_RS09535 are separated by 57 nucleotidesABIE41_RS09535 and ABIE41_RS09540 are separated by 84 nucleotides ABIE41_RS09530: ABIE41_RS09530 - Tol-Pal system beta propeller repeat protein TolB, at 1,968,077 to 1,969,333 _RS09530 ABIE41_RS09535: ABIE41_RS09535 - rhodanese-like domain-containing protein, at 1,969,391 to 1,969,810 _RS09535 ABIE41_RS09540: ABIE41_RS09540 - transcriptional regulator FtrA, at 1,969,895 to 1,970,950 _RS09540 Position (kb) 1969 1970Strain fitness (log2 ratio) -1 0 1at 1969.536 kb on + strand, within ABIE41_RS09535at 1969.537 kb on - strand, within ABIE41_RS09535at 1969.537 kb on - strand, within ABIE41_RS09535at 1969.537 kb on - strand, within ABIE41_RS09535at 1969.537 kb on - strand, within ABIE41_RS09535at 1969.537 kb on - strand, within ABIE41_RS09535at 1969.883 kb on + strandat 1969.934 kb on + strandat 1969.935 kb on - strandat 1969.935 kb on - strandat 1970.366 kb on - strand, within ABIE41_RS09540at 1970.366 kb on - strand, within ABIE41_RS09540

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,969,536 + ABIE41_RS09535 0.35 -0.0
1,969,537 - ABIE41_RS09535 0.35 +0.2
1,969,537 - ABIE41_RS09535 0.35 +0.4
1,969,537 - ABIE41_RS09535 0.35 -0.6
1,969,537 - ABIE41_RS09535 0.35 +1.7
1,969,537 - ABIE41_RS09535 0.35 +0.3
1,969,883 + +0.0
1,969,934 + +0.0
1,969,935 - +0.3
1,969,935 - -1.4
1,970,366 - ABIE41_RS09540 0.45 -1.6
1,970,366 - ABIE41_RS09540 0.45 +0.2

Or see this region's nucleotide sequence