Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25815

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS25810 and ABIE40_RS25815 are separated by 4 nucleotidesABIE40_RS25815 and ABIE40_RS25820 are separated by 63 nucleotides ABIE40_RS25810: ABIE40_RS25810 - TRAP transporter large permease, at 1,343,090 to 1,344,496 _RS25810 ABIE40_RS25815: ABIE40_RS25815 - TRAP transporter small permease, at 1,344,501 to 1,345,073 _RS25815 ABIE40_RS25820: ABIE40_RS25820 - sialic acid TRAP transporter substrate-binding protein SiaP, at 1,345,137 to 1,346,111 _RS25820 Position (kb) 1344 1345 1346Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1343.566 kb on + strand, within ABIE40_RS25810at 1343.746 kb on - strand, within ABIE40_RS25810at 1343.765 kb on + strand, within ABIE40_RS25810at 1343.765 kb on + strand, within ABIE40_RS25810at 1343.765 kb on + strand, within ABIE40_RS25810at 1343.766 kb on - strand, within ABIE40_RS25810at 1343.766 kb on - strand, within ABIE40_RS25810at 1343.766 kb on - strand, within ABIE40_RS25810at 1343.823 kb on + strand, within ABIE40_RS25810at 1343.823 kb on + strand, within ABIE40_RS25810at 1343.823 kb on + strand, within ABIE40_RS25810at 1343.823 kb on + strand, within ABIE40_RS25810at 1343.824 kb on - strand, within ABIE40_RS25810at 1343.824 kb on - strand, within ABIE40_RS25810at 1343.824 kb on - strand, within ABIE40_RS25810at 1343.824 kb on - strand, within ABIE40_RS25810at 1343.824 kb on - strand, within ABIE40_RS25810at 1343.826 kb on - strand, within ABIE40_RS25810at 1343.826 kb on - strand, within ABIE40_RS25810at 1343.846 kb on + strand, within ABIE40_RS25810at 1343.846 kb on + strand, within ABIE40_RS25810at 1344.027 kb on + strand, within ABIE40_RS25810at 1344.028 kb on - strand, within ABIE40_RS25810at 1344.209 kb on - strand, within ABIE40_RS25810at 1344.211 kb on + strand, within ABIE40_RS25810at 1344.211 kb on + strand, within ABIE40_RS25810at 1344.211 kb on + strand, within ABIE40_RS25810at 1344.211 kb on + strand, within ABIE40_RS25810at 1344.211 kb on + strand, within ABIE40_RS25810at 1344.212 kb on - strand, within ABIE40_RS25810at 1344.212 kb on - strand, within ABIE40_RS25810at 1344.268 kb on - strand, within ABIE40_RS25810at 1344.268 kb on - strand, within ABIE40_RS25810at 1344.268 kb on - strand, within ABIE40_RS25810at 1344.268 kb on - strand, within ABIE40_RS25810at 1344.399 kb on + strandat 1344.399 kb on + strandat 1344.411 kb on + strandat 1344.411 kb on + strandat 1344.411 kb on + strandat 1344.411 kb on + strandat 1344.411 kb on + strandat 1344.412 kb on - strandat 1344.412 kb on - strandat 1344.412 kb on - strandat 1344.412 kb on - strandat 1344.412 kb on - strandat 1344.560 kb on + strand, within ABIE40_RS25815at 1344.560 kb on + strand, within ABIE40_RS25815at 1344.561 kb on - strand, within ABIE40_RS25815at 1344.622 kb on + strand, within ABIE40_RS25815at 1344.623 kb on - strand, within ABIE40_RS25815at 1344.623 kb on - strand, within ABIE40_RS25815at 1344.685 kb on + strand, within ABIE40_RS25815at 1344.686 kb on - strand, within ABIE40_RS25815at 1344.700 kb on + strand, within ABIE40_RS25815at 1344.700 kb on + strand, within ABIE40_RS25815at 1344.700 kb on + strand, within ABIE40_RS25815at 1344.776 kb on + strand, within ABIE40_RS25815at 1344.776 kb on + strand, within ABIE40_RS25815at 1344.776 kb on + strand, within ABIE40_RS25815at 1344.776 kb on + strand, within ABIE40_RS25815at 1344.776 kb on + strand, within ABIE40_RS25815at 1344.776 kb on + strand, within ABIE40_RS25815at 1344.777 kb on - strand, within ABIE40_RS25815at 1344.777 kb on - strand, within ABIE40_RS25815at 1344.777 kb on - strand, within ABIE40_RS25815at 1344.778 kb on + strand, within ABIE40_RS25815at 1344.778 kb on + strand, within ABIE40_RS25815at 1344.778 kb on + strand, within ABIE40_RS25815at 1344.778 kb on + strand, within ABIE40_RS25815at 1344.778 kb on + strand, within ABIE40_RS25815at 1344.778 kb on + strand, within ABIE40_RS25815at 1344.779 kb on - strand, within ABIE40_RS25815at 1344.779 kb on - strand, within ABIE40_RS25815at 1344.779 kb on - strand, within ABIE40_RS25815at 1344.779 kb on - strand, within ABIE40_RS25815at 1344.779 kb on - strand, within ABIE40_RS25815at 1344.779 kb on - strand, within ABIE40_RS25815at 1344.779 kb on - strand, within ABIE40_RS25815at 1344.779 kb on - strand, within ABIE40_RS25815at 1344.784 kb on + strand, within ABIE40_RS25815at 1344.784 kb on + strand, within ABIE40_RS25815at 1344.784 kb on + strand, within ABIE40_RS25815at 1344.784 kb on + strand, within ABIE40_RS25815at 1344.784 kb on + strand, within ABIE40_RS25815at 1344.784 kb on + strand, within ABIE40_RS25815at 1344.784 kb on + strand, within ABIE40_RS25815at 1344.785 kb on - strand, within ABIE40_RS25815at 1344.785 kb on - strand, within ABIE40_RS25815at 1344.785 kb on - strand, within ABIE40_RS25815at 1344.785 kb on - strand, within ABIE40_RS25815at 1344.785 kb on - strand, within ABIE40_RS25815at 1344.785 kb on - strand, within ABIE40_RS25815at 1344.785 kb on - strand, within ABIE40_RS25815at 1344.889 kb on + strand, within ABIE40_RS25815at 1344.889 kb on + strand, within ABIE40_RS25815at 1344.890 kb on - strand, within ABIE40_RS25815at 1344.907 kb on + strand, within ABIE40_RS25815at 1344.907 kb on + strand, within ABIE40_RS25815at 1344.907 kb on + strand, within ABIE40_RS25815at 1344.907 kb on + strand, within ABIE40_RS25815at 1344.907 kb on + strand, within ABIE40_RS25815at 1344.908 kb on - strand, within ABIE40_RS25815at 1344.908 kb on - strand, within ABIE40_RS25815at 1344.908 kb on - strand, within ABIE40_RS25815at 1344.996 kb on - strand, within ABIE40_RS25815at 1344.996 kb on - strand, within ABIE40_RS25815at 1345.056 kb on - strandat 1345.525 kb on + strand, within ABIE40_RS25820at 1345.525 kb on + strand, within ABIE40_RS25820at 1345.526 kb on - strand, within ABIE40_RS25820at 1345.626 kb on - strand, within ABIE40_RS25820at 1345.626 kb on - strand, within ABIE40_RS25820at 1345.675 kb on + strand, within ABIE40_RS25820at 1345.675 kb on + strand, within ABIE40_RS25820at 1345.675 kb on + strand, within ABIE40_RS25820at 1345.676 kb on - strand, within ABIE40_RS25820at 1345.676 kb on - strand, within ABIE40_RS25820at 1345.676 kb on - strand, within ABIE40_RS25820at 1345.678 kb on + strand, within ABIE40_RS25820at 1345.678 kb on + strand, within ABIE40_RS25820at 1345.678 kb on + strand, within ABIE40_RS25820at 1345.679 kb on - strand, within ABIE40_RS25820at 1345.679 kb on - strand, within ABIE40_RS25820at 1345.679 kb on - strand, within ABIE40_RS25820at 1345.679 kb on - strand, within ABIE40_RS25820at 1345.717 kb on + strand, within ABIE40_RS25820at 1345.755 kb on - strand, within ABIE40_RS25820at 1345.787 kb on + strand, within ABIE40_RS25820at 1345.787 kb on + strand, within ABIE40_RS25820at 1345.787 kb on + strand, within ABIE40_RS25820at 1345.787 kb on + strand, within ABIE40_RS25820at 1345.788 kb on - strand, within ABIE40_RS25820at 1345.788 kb on - strand, within ABIE40_RS25820at 1345.788 kb on - strand, within ABIE40_RS25820at 1345.788 kb on - strand, within ABIE40_RS25820at 1345.789 kb on + strand, within ABIE40_RS25820at 1345.789 kb on + strand, within ABIE40_RS25820at 1345.790 kb on - strand, within ABIE40_RS25820at 1345.790 kb on - strand, within ABIE40_RS25820at 1345.790 kb on - strand, within ABIE40_RS25820at 1345.798 kb on + strand, within ABIE40_RS25820at 1345.799 kb on - strand, within ABIE40_RS25820at 1345.799 kb on - strand, within ABIE40_RS25820at 1345.799 kb on - strand, within ABIE40_RS25820at 1345.819 kb on + strand, within ABIE40_RS25820at 1345.888 kb on - strand, within ABIE40_RS25820at 1345.936 kb on + strand, within ABIE40_RS25820at 1346.011 kb on + strand, within ABIE40_RS25820at 1346.012 kb on - strand, within ABIE40_RS25820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
1,343,566 + ABIE40_RS25810 0.34 +0.1
1,343,746 - ABIE40_RS25810 0.47 +1.1
1,343,765 + ABIE40_RS25810 0.48 -0.9
1,343,765 + ABIE40_RS25810 0.48 +0.6
1,343,765 + ABIE40_RS25810 0.48 +1.2
1,343,766 - ABIE40_RS25810 0.48 +0.4
1,343,766 - ABIE40_RS25810 0.48 -1.2
1,343,766 - ABIE40_RS25810 0.48 +0.4
1,343,823 + ABIE40_RS25810 0.52 +0.3
1,343,823 + ABIE40_RS25810 0.52 +0.2
1,343,823 + ABIE40_RS25810 0.52 +2.7
1,343,823 + ABIE40_RS25810 0.52 +0.8
1,343,824 - ABIE40_RS25810 0.52 -1.3
1,343,824 - ABIE40_RS25810 0.52 -2.0
1,343,824 - ABIE40_RS25810 0.52 -0.3
1,343,824 - ABIE40_RS25810 0.52 -1.1
1,343,824 - ABIE40_RS25810 0.52 -0.2
1,343,826 - ABIE40_RS25810 0.52 +1.4
1,343,826 - ABIE40_RS25810 0.52 -0.5
1,343,846 + ABIE40_RS25810 0.54 -2.8
1,343,846 + ABIE40_RS25810 0.54 -0.5
1,344,027 + ABIE40_RS25810 0.67 -0.5
1,344,028 - ABIE40_RS25810 0.67 +0.0
1,344,209 - ABIE40_RS25810 0.80 -0.2
1,344,211 + ABIE40_RS25810 0.80 +0.2
1,344,211 + ABIE40_RS25810 0.80 +0.4
1,344,211 + ABIE40_RS25810 0.80 +0.5
1,344,211 + ABIE40_RS25810 0.80 -2.4
1,344,211 + ABIE40_RS25810 0.80 -0.1
1,344,212 - ABIE40_RS25810 0.80 -1.2
1,344,212 - ABIE40_RS25810 0.80 -0.4
1,344,268 - ABIE40_RS25810 0.84 +0.7
1,344,268 - ABIE40_RS25810 0.84 +0.3
1,344,268 - ABIE40_RS25810 0.84 -0.2
1,344,268 - ABIE40_RS25810 0.84 -0.9
1,344,399 + +1.0
1,344,399 + -1.7
1,344,411 + -0.1
1,344,411 + -0.5
1,344,411 + -1.4
1,344,411 + -2.1
1,344,411 + -0.4
1,344,412 - -3.0
1,344,412 - -0.9
1,344,412 - -1.5
1,344,412 - -2.1
1,344,412 - -2.1
1,344,560 + ABIE40_RS25815 0.10 -0.5
1,344,560 + ABIE40_RS25815 0.10 +0.2
1,344,561 - ABIE40_RS25815 0.10 +0.0
1,344,622 + ABIE40_RS25815 0.21 +0.3
1,344,623 - ABIE40_RS25815 0.21 +0.4
1,344,623 - ABIE40_RS25815 0.21 -0.6
1,344,685 + ABIE40_RS25815 0.32 -0.3
1,344,686 - ABIE40_RS25815 0.32 +0.4
1,344,700 + ABIE40_RS25815 0.35 +0.6
1,344,700 + ABIE40_RS25815 0.35 -1.8
1,344,700 + ABIE40_RS25815 0.35 -1.5
1,344,776 + ABIE40_RS25815 0.48 +0.5
1,344,776 + ABIE40_RS25815 0.48 -1.9
1,344,776 + ABIE40_RS25815 0.48 -0.6
1,344,776 + ABIE40_RS25815 0.48 -0.6
1,344,776 + ABIE40_RS25815 0.48 -0.1
1,344,776 + ABIE40_RS25815 0.48 -0.1
1,344,777 - ABIE40_RS25815 0.48 -0.9
1,344,777 - ABIE40_RS25815 0.48 -0.0
1,344,777 - ABIE40_RS25815 0.48 +0.9
1,344,778 + ABIE40_RS25815 0.48 +1.5
1,344,778 + ABIE40_RS25815 0.48 -0.5
1,344,778 + ABIE40_RS25815 0.48 -3.0
1,344,778 + ABIE40_RS25815 0.48 -0.1
1,344,778 + ABIE40_RS25815 0.48 -2.2
1,344,778 + ABIE40_RS25815 0.48 +0.1
1,344,779 - ABIE40_RS25815 0.49 -0.9
1,344,779 - ABIE40_RS25815 0.49 -0.4
1,344,779 - ABIE40_RS25815 0.49 +0.8
1,344,779 - ABIE40_RS25815 0.49 +2.4
1,344,779 - ABIE40_RS25815 0.49 +0.2
1,344,779 - ABIE40_RS25815 0.49 -0.5
1,344,779 - ABIE40_RS25815 0.49 +0.5
1,344,779 - ABIE40_RS25815 0.49 -1.5
1,344,784 + ABIE40_RS25815 0.49 -0.5
1,344,784 + ABIE40_RS25815 0.49 -0.1
1,344,784 + ABIE40_RS25815 0.49 +2.7
1,344,784 + ABIE40_RS25815 0.49 -0.4
1,344,784 + ABIE40_RS25815 0.49 +0.5
1,344,784 + ABIE40_RS25815 0.49 -0.4
1,344,784 + ABIE40_RS25815 0.49 -0.6
1,344,785 - ABIE40_RS25815 0.50 +0.1
1,344,785 - ABIE40_RS25815 0.50 -1.1
1,344,785 - ABIE40_RS25815 0.50 -0.9
1,344,785 - ABIE40_RS25815 0.50 +1.2
1,344,785 - ABIE40_RS25815 0.50 +0.4
1,344,785 - ABIE40_RS25815 0.50 +1.1
1,344,785 - ABIE40_RS25815 0.50 +1.4
1,344,889 + ABIE40_RS25815 0.68 +0.1
1,344,889 + ABIE40_RS25815 0.68 -0.2
1,344,890 - ABIE40_RS25815 0.68 +1.1
1,344,907 + ABIE40_RS25815 0.71 -2.6
1,344,907 + ABIE40_RS25815 0.71 +1.9
1,344,907 + ABIE40_RS25815 0.71 +0.4
1,344,907 + ABIE40_RS25815 0.71 +0.6
1,344,907 + ABIE40_RS25815 0.71 -1.1
1,344,908 - ABIE40_RS25815 0.71 +1.2
1,344,908 - ABIE40_RS25815 0.71 -0.3
1,344,908 - ABIE40_RS25815 0.71 -0.4
1,344,996 - ABIE40_RS25815 0.86 -0.6
1,344,996 - ABIE40_RS25815 0.86 +0.7
1,345,056 - -0.6
1,345,525 + ABIE40_RS25820 0.40 +2.2
1,345,525 + ABIE40_RS25820 0.40 -0.0
1,345,526 - ABIE40_RS25820 0.40 -0.5
1,345,626 - ABIE40_RS25820 0.50 +0.7
1,345,626 - ABIE40_RS25820 0.50 -2.9
1,345,675 + ABIE40_RS25820 0.55 +1.1
1,345,675 + ABIE40_RS25820 0.55 -2.8
1,345,675 + ABIE40_RS25820 0.55 +0.9
1,345,676 - ABIE40_RS25820 0.55 +0.2
1,345,676 - ABIE40_RS25820 0.55 -0.2
1,345,676 - ABIE40_RS25820 0.55 -1.5
1,345,678 + ABIE40_RS25820 0.55 -0.3
1,345,678 + ABIE40_RS25820 0.55 -1.5
1,345,678 + ABIE40_RS25820 0.55 +1.5
1,345,679 - ABIE40_RS25820 0.56 -0.1
1,345,679 - ABIE40_RS25820 0.56 -0.7
1,345,679 - ABIE40_RS25820 0.56 -0.6
1,345,679 - ABIE40_RS25820 0.56 -1.0
1,345,717 + ABIE40_RS25820 0.59 -0.5
1,345,755 - ABIE40_RS25820 0.63 +1.8
1,345,787 + ABIE40_RS25820 0.67 +0.1
1,345,787 + ABIE40_RS25820 0.67 +0.9
1,345,787 + ABIE40_RS25820 0.67 -0.5
1,345,787 + ABIE40_RS25820 0.67 -0.2
1,345,788 - ABIE40_RS25820 0.67 -2.8
1,345,788 - ABIE40_RS25820 0.67 +0.9
1,345,788 - ABIE40_RS25820 0.67 -2.8
1,345,788 - ABIE40_RS25820 0.67 +0.0
1,345,789 + ABIE40_RS25820 0.67 -2.8
1,345,789 + ABIE40_RS25820 0.67 +0.1
1,345,790 - ABIE40_RS25820 0.67 +0.4
1,345,790 - ABIE40_RS25820 0.67 -0.9
1,345,790 - ABIE40_RS25820 0.67 +0.4
1,345,798 + ABIE40_RS25820 0.68 +1.2
1,345,799 - ABIE40_RS25820 0.68 -0.9
1,345,799 - ABIE40_RS25820 0.68 -1.6
1,345,799 - ABIE40_RS25820 0.68 +0.0
1,345,819 + ABIE40_RS25820 0.70 -2.7
1,345,888 - ABIE40_RS25820 0.77 +0.3
1,345,936 + ABIE40_RS25820 0.82 +0.3
1,346,011 + ABIE40_RS25820 0.90 +0.5
1,346,012 - ABIE40_RS25820 0.90 +0.0

Or see this region's nucleotide sequence