Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22040

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22035 and ABIE40_RS22040 are separated by 318 nucleotidesABIE40_RS22040 and ABIE40_RS22045 are separated by 19 nucleotides ABIE40_RS22035: ABIE40_RS22035 - GGDEF domain-containing protein, at 542,095 to 542,850 _RS22035 ABIE40_RS22040: ABIE40_RS22040 - TolC family outer membrane protein, at 543,169 to 544,530 _RS22040 ABIE40_RS22045: ABIE40_RS22045 - type I secretion system permease/ATPase, at 544,550 to 546,745 _RS22045 Position (kb) 543 544 545Strain fitness (log2 ratio) -2 -1 0 1 2 3at 542.419 kb on + strand, within ABIE40_RS22035at 542.419 kb on + strand, within ABIE40_RS22035at 542.419 kb on + strand, within ABIE40_RS22035at 542.420 kb on - strand, within ABIE40_RS22035at 542.420 kb on - strand, within ABIE40_RS22035at 542.420 kb on - strand, within ABIE40_RS22035at 542.420 kb on - strand, within ABIE40_RS22035at 542.420 kb on - strand, within ABIE40_RS22035at 542.424 kb on + strand, within ABIE40_RS22035at 542.424 kb on + strand, within ABIE40_RS22035at 542.424 kb on + strand, within ABIE40_RS22035at 542.425 kb on - strand, within ABIE40_RS22035at 542.425 kb on - strand, within ABIE40_RS22035at 542.425 kb on - strand, within ABIE40_RS22035at 542.534 kb on + strand, within ABIE40_RS22035at 542.534 kb on + strand, within ABIE40_RS22035at 542.534 kb on + strand, within ABIE40_RS22035at 542.534 kb on + strand, within ABIE40_RS22035at 542.534 kb on + strand, within ABIE40_RS22035at 542.534 kb on + strand, within ABIE40_RS22035at 542.534 kb on + strand, within ABIE40_RS22035at 542.535 kb on - strand, within ABIE40_RS22035at 542.535 kb on - strand, within ABIE40_RS22035at 542.535 kb on - strand, within ABIE40_RS22035at 542.535 kb on - strand, within ABIE40_RS22035at 542.607 kb on + strand, within ABIE40_RS22035at 542.607 kb on + strand, within ABIE40_RS22035at 542.608 kb on - strand, within ABIE40_RS22035at 542.620 kb on + strand, within ABIE40_RS22035at 542.621 kb on - strand, within ABIE40_RS22035at 542.698 kb on - strand, within ABIE40_RS22035at 542.748 kb on + strand, within ABIE40_RS22035at 542.748 kb on + strand, within ABIE40_RS22035at 542.752 kb on + strand, within ABIE40_RS22035at 542.885 kb on + strandat 542.885 kb on + strandat 542.938 kb on - strandat 542.987 kb on - strandat 543.041 kb on + strandat 543.280 kb on + strandat 543.345 kb on + strand, within ABIE40_RS22040at 543.346 kb on - strand, within ABIE40_RS22040at 543.346 kb on - strand, within ABIE40_RS22040at 543.367 kb on + strand, within ABIE40_RS22040at 543.367 kb on + strand, within ABIE40_RS22040at 543.368 kb on - strand, within ABIE40_RS22040at 543.368 kb on - strand, within ABIE40_RS22040at 543.368 kb on - strand, within ABIE40_RS22040at 543.368 kb on - strand, within ABIE40_RS22040at 543.368 kb on - strand, within ABIE40_RS22040at 543.527 kb on - strand, within ABIE40_RS22040at 543.527 kb on - strand, within ABIE40_RS22040at 543.527 kb on - strand, within ABIE40_RS22040at 543.535 kb on + strand, within ABIE40_RS22040at 543.535 kb on + strand, within ABIE40_RS22040at 543.536 kb on - strand, within ABIE40_RS22040at 543.853 kb on + strand, within ABIE40_RS22040at 543.853 kb on + strand, within ABIE40_RS22040at 543.854 kb on - strand, within ABIE40_RS22040at 543.854 kb on - strand, within ABIE40_RS22040at 543.913 kb on + strand, within ABIE40_RS22040at 543.913 kb on + strand, within ABIE40_RS22040at 543.913 kb on + strand, within ABIE40_RS22040at 543.991 kb on + strand, within ABIE40_RS22040at 544.024 kb on + strand, within ABIE40_RS22040at 544.025 kb on - strand, within ABIE40_RS22040at 544.025 kb on - strand, within ABIE40_RS22040at 544.025 kb on - strand, within ABIE40_RS22040at 544.182 kb on + strand, within ABIE40_RS22040at 544.183 kb on - strand, within ABIE40_RS22040at 544.219 kb on + strand, within ABIE40_RS22040at 544.339 kb on + strand, within ABIE40_RS22040at 544.339 kb on + strand, within ABIE40_RS22040at 544.339 kb on + strand, within ABIE40_RS22040at 544.339 kb on + strand, within ABIE40_RS22040at 544.339 kb on + strand, within ABIE40_RS22040at 544.340 kb on - strand, within ABIE40_RS22040at 544.340 kb on - strand, within ABIE40_RS22040at 544.340 kb on - strand, within ABIE40_RS22040at 544.411 kb on + strandat 544.412 kb on - strandat 544.459 kb on + strandat 544.508 kb on + strandat 544.509 kb on - strandat 544.528 kb on + strandat 544.528 kb on + strandat 544.528 kb on + strandat 544.529 kb on - strandat 544.560 kb on + strandat 544.560 kb on + strandat 544.616 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.856 kb on + strand, within ABIE40_RS22045at 544.856 kb on + strand, within ABIE40_RS22045at 544.857 kb on - strand, within ABIE40_RS22045at 544.857 kb on - strand, within ABIE40_RS22045at 544.857 kb on - strand, within ABIE40_RS22045at 544.857 kb on - strand, within ABIE40_RS22045at 544.933 kb on + strand, within ABIE40_RS22045at 544.955 kb on + strand, within ABIE40_RS22045at 544.955 kb on + strand, within ABIE40_RS22045at 544.955 kb on + strand, within ABIE40_RS22045at 544.956 kb on - strand, within ABIE40_RS22045at 544.958 kb on + strand, within ABIE40_RS22045at 544.959 kb on - strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.129 kb on + strand, within ABIE40_RS22045at 545.130 kb on - strand, within ABIE40_RS22045at 545.130 kb on - strand, within ABIE40_RS22045at 545.199 kb on - strand, within ABIE40_RS22045at 545.247 kb on - strand, within ABIE40_RS22045at 545.247 kb on - strand, within ABIE40_RS22045at 545.342 kb on + strand, within ABIE40_RS22045at 545.342 kb on + strand, within ABIE40_RS22045at 545.343 kb on - strand, within ABIE40_RS22045at 545.363 kb on + strand, within ABIE40_RS22045at 545.363 kb on + strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.450 kb on + strand, within ABIE40_RS22045at 545.450 kb on + strand, within ABIE40_RS22045at 545.450 kb on + strand, within ABIE40_RS22045at 545.450 kb on + strand, within ABIE40_RS22045at 545.451 kb on - strand, within ABIE40_RS22045at 545.451 kb on - strand, within ABIE40_RS22045at 545.451 kb on - strand, within ABIE40_RS22045

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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542,419 + ABIE40_RS22035 0.43 -0.2
542,419 + ABIE40_RS22035 0.43 -1.6
542,419 + ABIE40_RS22035 0.43 +0.8
542,420 - ABIE40_RS22035 0.43 -0.4
542,420 - ABIE40_RS22035 0.43 -0.1
542,420 - ABIE40_RS22035 0.43 -1.3
542,420 - ABIE40_RS22035 0.43 -1.3
542,420 - ABIE40_RS22035 0.43 +0.7
542,424 + ABIE40_RS22035 0.44 +0.7
542,424 + ABIE40_RS22035 0.44 -0.2
542,424 + ABIE40_RS22035 0.44 +0.8
542,425 - ABIE40_RS22035 0.44 -1.0
542,425 - ABIE40_RS22035 0.44 +1.3
542,425 - ABIE40_RS22035 0.44 +0.7
542,534 + ABIE40_RS22035 0.58 -0.0
542,534 + ABIE40_RS22035 0.58 +0.2
542,534 + ABIE40_RS22035 0.58 +3.6
542,534 + ABIE40_RS22035 0.58 -0.3
542,534 + ABIE40_RS22035 0.58 +0.6
542,534 + ABIE40_RS22035 0.58 +1.4
542,534 + ABIE40_RS22035 0.58 +1.3
542,535 - ABIE40_RS22035 0.58 -2.3
542,535 - ABIE40_RS22035 0.58 +0.7
542,535 - ABIE40_RS22035 0.58 -1.2
542,535 - ABIE40_RS22035 0.58 +0.7
542,607 + ABIE40_RS22035 0.68 -1.1
542,607 + ABIE40_RS22035 0.68 +1.4
542,608 - ABIE40_RS22035 0.68 +0.2
542,620 + ABIE40_RS22035 0.69 +0.5
542,621 - ABIE40_RS22035 0.70 +1.3
542,698 - ABIE40_RS22035 0.80 -0.0
542,748 + ABIE40_RS22035 0.86 +0.5
542,748 + ABIE40_RS22035 0.86 +0.6
542,752 + ABIE40_RS22035 0.87 -0.9
542,885 + +0.3
542,885 + +1.0
542,938 - +0.2
542,987 - -1.7
543,041 + +0.8
543,280 + +0.2
543,345 + ABIE40_RS22040 0.13 +0.8
543,346 - ABIE40_RS22040 0.13 -0.4
543,346 - ABIE40_RS22040 0.13 -2.3
543,367 + ABIE40_RS22040 0.15 -0.5
543,367 + ABIE40_RS22040 0.15 -0.2
543,368 - ABIE40_RS22040 0.15 +0.4
543,368 - ABIE40_RS22040 0.15 -1.1
543,368 - ABIE40_RS22040 0.15 -1.1
543,368 - ABIE40_RS22040 0.15 -0.4
543,368 - ABIE40_RS22040 0.15 +0.5
543,527 - ABIE40_RS22040 0.26 -2.6
543,527 - ABIE40_RS22040 0.26 -0.4
543,527 - ABIE40_RS22040 0.26 -0.4
543,535 + ABIE40_RS22040 0.27 -0.8
543,535 + ABIE40_RS22040 0.27 +2.0
543,536 - ABIE40_RS22040 0.27 +1.1
543,853 + ABIE40_RS22040 0.50 -1.5
543,853 + ABIE40_RS22040 0.50 +0.3
543,854 - ABIE40_RS22040 0.50 -1.3
543,854 - ABIE40_RS22040 0.50 +0.7
543,913 + ABIE40_RS22040 0.55 +0.3
543,913 + ABIE40_RS22040 0.55 +0.5
543,913 + ABIE40_RS22040 0.55 +0.2
543,991 + ABIE40_RS22040 0.60 -1.2
544,024 + ABIE40_RS22040 0.63 -1.7
544,025 - ABIE40_RS22040 0.63 +0.8
544,025 - ABIE40_RS22040 0.63 +0.3
544,025 - ABIE40_RS22040 0.63 +0.3
544,182 + ABIE40_RS22040 0.74 +0.2
544,183 - ABIE40_RS22040 0.74 -1.3
544,219 + ABIE40_RS22040 0.77 +0.4
544,339 + ABIE40_RS22040 0.86 +1.2
544,339 + ABIE40_RS22040 0.86 -1.0
544,339 + ABIE40_RS22040 0.86 -0.4
544,339 + ABIE40_RS22040 0.86 +0.4
544,339 + ABIE40_RS22040 0.86 -0.0
544,340 - ABIE40_RS22040 0.86 +0.5
544,340 - ABIE40_RS22040 0.86 -0.4
544,340 - ABIE40_RS22040 0.86 -0.6
544,411 + +0.3
544,412 - +0.1
544,459 + +0.9
544,508 + +2.2
544,509 - -0.3
544,528 + -2.7
544,528 + -0.0
544,528 + +0.6
544,529 - -1.5
544,560 + -1.7
544,560 + -0.3
544,616 + -0.2
544,631 + +2.0
544,631 + -2.7
544,631 + -0.3
544,631 + +1.0
544,631 + -0.2
544,631 + +0.6
544,631 + -0.4
544,632 - -0.5
544,632 - +0.7
544,632 - -0.1
544,632 - +3.4
544,632 - -1.5
544,632 - +0.0
544,632 - -0.6
544,632 - +2.4
544,632 - +0.8
544,856 + ABIE40_RS22045 0.14 +0.5
544,856 + ABIE40_RS22045 0.14 +0.1
544,857 - ABIE40_RS22045 0.14 +1.4
544,857 - ABIE40_RS22045 0.14 +2.0
544,857 - ABIE40_RS22045 0.14 -0.4
544,857 - ABIE40_RS22045 0.14 -0.6
544,933 + ABIE40_RS22045 0.17 +0.5
544,955 + ABIE40_RS22045 0.18 +0.4
544,955 + ABIE40_RS22045 0.18 -1.4
544,955 + ABIE40_RS22045 0.18 -0.2
544,956 - ABIE40_RS22045 0.18 -0.9
544,958 + ABIE40_RS22045 0.19 +0.1
544,959 - ABIE40_RS22045 0.19 +0.8
545,054 + ABIE40_RS22045 0.23 -0.2
545,054 + ABIE40_RS22045 0.23 +0.1
545,054 + ABIE40_RS22045 0.23 -0.2
545,054 + ABIE40_RS22045 0.23 -1.7
545,054 + ABIE40_RS22045 0.23 -1.7
545,054 + ABIE40_RS22045 0.23 -1.9
545,054 + ABIE40_RS22045 0.23 -0.6
545,054 + ABIE40_RS22045 0.23 -1.0
545,055 - ABIE40_RS22045 0.23 +0.5
545,055 - ABIE40_RS22045 0.23 +0.2
545,055 - ABIE40_RS22045 0.23 +0.5
545,055 - ABIE40_RS22045 0.23 +0.4
545,055 - ABIE40_RS22045 0.23 +0.9
545,055 - ABIE40_RS22045 0.23 -0.4
545,055 - ABIE40_RS22045 0.23 +0.4
545,129 + ABIE40_RS22045 0.26 +0.2
545,130 - ABIE40_RS22045 0.26 +0.2
545,130 - ABIE40_RS22045 0.26 -1.2
545,199 - ABIE40_RS22045 0.30 +0.5
545,247 - ABIE40_RS22045 0.32 -1.0
545,247 - ABIE40_RS22045 0.32 +0.8
545,342 + ABIE40_RS22045 0.36 -0.3
545,342 + ABIE40_RS22045 0.36 -0.3
545,343 - ABIE40_RS22045 0.36 -2.4
545,363 + ABIE40_RS22045 0.37 +0.8
545,363 + ABIE40_RS22045 0.37 -0.1
545,364 - ABIE40_RS22045 0.37 -0.7
545,364 - ABIE40_RS22045 0.37 -0.6
545,364 - ABIE40_RS22045 0.37 +0.7
545,364 - ABIE40_RS22045 0.37 +0.7
545,364 - ABIE40_RS22045 0.37 +0.2
545,364 - ABIE40_RS22045 0.37 -0.4
545,450 + ABIE40_RS22045 0.41 -0.6
545,450 + ABIE40_RS22045 0.41 +0.0
545,450 + ABIE40_RS22045 0.41 +1.0
545,450 + ABIE40_RS22045 0.41 +0.4
545,451 - ABIE40_RS22045 0.41 +0.6
545,451 - ABIE40_RS22045 0.41 +0.8
545,451 - ABIE40_RS22045 0.41 -1.3

Or see this region's nucleotide sequence