Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21910

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS21905 and ABIE40_RS21910 are separated by 29 nucleotidesABIE40_RS21910 and ABIE40_RS21915 are separated by 174 nucleotidesABIE40_RS21915 and ABIE40_RS21920 are separated by 119 nucleotides ABIE40_RS21905: ABIE40_RS21905 - Ldh family oxidoreductase, at 505,293 to 506,333 _RS21905 ABIE40_RS21910: ABIE40_RS21910 - M20 aminoacylase family protein, at 506,363 to 507,541 _RS21910 ABIE40_RS21915: ABIE40_RS21915 - hypothetical protein, at 507,716 to 508,051 _RS21915 ABIE40_RS21920: ABIE40_RS21920 - DMT family transporter, at 508,171 to 509,094 _RS21920 Position (kb) 506 507 508Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 505.394 kb on + strandat 505.394 kb on + strandat 505.394 kb on + strandat 505.395 kb on - strandat 505.395 kb on - strandat 505.395 kb on - strandat 505.396 kb on + strandat 505.558 kb on + strand, within ABIE40_RS21905at 505.559 kb on - strand, within ABIE40_RS21905at 505.798 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.895 kb on - strand, within ABIE40_RS21905at 505.895 kb on - strand, within ABIE40_RS21905at 506.182 kb on + strand, within ABIE40_RS21905at 506.182 kb on + strand, within ABIE40_RS21905at 506.182 kb on + strand, within ABIE40_RS21905at 506.183 kb on - strand, within ABIE40_RS21905at 506.339 kb on + strandat 506.339 kb on + strandat 506.339 kb on + strandat 506.340 kb on - strandat 506.365 kb on - strandat 506.409 kb on + strandat 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.556 kb on + strand, within ABIE40_RS21910at 506.556 kb on + strand, within ABIE40_RS21910at 506.557 kb on - strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.899 kb on + strand, within ABIE40_RS21910at 506.899 kb on + strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 507.049 kb on + strand, within ABIE40_RS21910at 507.049 kb on + strand, within ABIE40_RS21910at 507.050 kb on - strand, within ABIE40_RS21910at 507.050 kb on - strand, within ABIE40_RS21910at 507.050 kb on - strand, within ABIE40_RS21910at 507.060 kb on + strand, within ABIE40_RS21910at 507.060 kb on + strand, within ABIE40_RS21910at 507.061 kb on - strand, within ABIE40_RS21910at 507.061 kb on - strand, within ABIE40_RS21910at 507.061 kb on - strand, within ABIE40_RS21910at 507.267 kb on + strand, within ABIE40_RS21910at 507.267 kb on + strand, within ABIE40_RS21910at 507.267 kb on + strand, within ABIE40_RS21910at 507.268 kb on - strand, within ABIE40_RS21910at 507.268 kb on - strand, within ABIE40_RS21910at 507.268 kb on - strand, within ABIE40_RS21910at 507.665 kb on - strandat 507.689 kb on + strandat 507.690 kb on - strandat 507.690 kb on - strandat 507.820 kb on + strand, within ABIE40_RS21915at 508.080 kb on + strandat 508.080 kb on + strandat 508.080 kb on + strandat 508.081 kb on - strandat 508.150 kb on + strandat 508.245 kb on + strandat 508.245 kb on + strandat 508.469 kb on - strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.500 kb on + strand, within ABIE40_RS21920at 508.501 kb on - strand, within ABIE40_RS21920at 508.516 kb on + strand, within ABIE40_RS21920at 508.517 kb on - strand, within ABIE40_RS21920at 508.517 kb on - strand, within ABIE40_RS21920at 508.517 kb on - strand, within ABIE40_RS21920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
505,394 + +0.2
505,394 + +0.3
505,394 + -0.8
505,395 - +0.2
505,395 - +1.1
505,395 - +1.4
505,396 + -0.5
505,558 + ABIE40_RS21905 0.25 +0.1
505,559 - ABIE40_RS21905 0.26 -0.2
505,798 + ABIE40_RS21905 0.49 +2.6
505,804 + ABIE40_RS21905 0.49 +0.1
505,804 + ABIE40_RS21905 0.49 +0.4
505,804 + ABIE40_RS21905 0.49 +0.5
505,804 + ABIE40_RS21905 0.49 +0.5
505,804 + ABIE40_RS21905 0.49 -0.7
505,804 + ABIE40_RS21905 0.49 +0.6
505,805 - ABIE40_RS21905 0.49 -0.1
505,805 - ABIE40_RS21905 0.49 +0.9
505,805 - ABIE40_RS21905 0.49 -0.8
505,805 - ABIE40_RS21905 0.49 +0.6
505,805 - ABIE40_RS21905 0.49 +0.3
505,805 - ABIE40_RS21905 0.49 -0.5
505,895 - ABIE40_RS21905 0.58 -1.1
505,895 - ABIE40_RS21905 0.58 +1.7
506,182 + ABIE40_RS21905 0.85 -0.4
506,182 + ABIE40_RS21905 0.85 +3.0
506,182 + ABIE40_RS21905 0.85 -2.3
506,183 - ABIE40_RS21905 0.85 +0.3
506,339 + -0.9
506,339 + -0.1
506,339 + -0.7
506,340 - -0.3
506,365 - -0.4
506,409 + -0.2
506,523 + ABIE40_RS21910 0.14 +0.2
506,523 + ABIE40_RS21910 0.14 -0.4
506,523 + ABIE40_RS21910 0.14 +0.2
506,523 + ABIE40_RS21910 0.14 +0.4
506,523 + ABIE40_RS21910 0.14 +1.4
506,523 + ABIE40_RS21910 0.14 -0.5
506,524 - ABIE40_RS21910 0.14 -0.8
506,524 - ABIE40_RS21910 0.14 -1.8
506,524 - ABIE40_RS21910 0.14 -0.3
506,524 - ABIE40_RS21910 0.14 -0.6
506,524 - ABIE40_RS21910 0.14 -1.6
506,524 - ABIE40_RS21910 0.14 +0.4
506,556 + ABIE40_RS21910 0.16 -0.5
506,556 + ABIE40_RS21910 0.16 -2.1
506,557 - ABIE40_RS21910 0.16 -0.3
506,826 + ABIE40_RS21910 0.39 +0.2
506,826 + ABIE40_RS21910 0.39 -0.5
506,826 + ABIE40_RS21910 0.39 +2.0
506,826 + ABIE40_RS21910 0.39 +0.3
506,826 + ABIE40_RS21910 0.39 -0.4
506,827 - ABIE40_RS21910 0.39 -0.8
506,827 - ABIE40_RS21910 0.39 -1.3
506,827 - ABIE40_RS21910 0.39 +0.6
506,827 - ABIE40_RS21910 0.39 -0.7
506,827 - ABIE40_RS21910 0.39 +0.9
506,827 - ABIE40_RS21910 0.39 +0.9
506,827 - ABIE40_RS21910 0.39 -0.0
506,827 - ABIE40_RS21910 0.39 +0.1
506,827 - ABIE40_RS21910 0.39 -2.0
506,827 - ABIE40_RS21910 0.39 -0.7
506,827 - ABIE40_RS21910 0.39 -0.7
506,899 + ABIE40_RS21910 0.45 +1.0
506,899 + ABIE40_RS21910 0.45 -0.6
506,900 - ABIE40_RS21910 0.46 +1.0
506,900 - ABIE40_RS21910 0.46 -1.1
506,900 - ABIE40_RS21910 0.46 -1.2
506,900 - ABIE40_RS21910 0.46 +1.7
507,049 + ABIE40_RS21910 0.58 -0.3
507,049 + ABIE40_RS21910 0.58 -0.2
507,050 - ABIE40_RS21910 0.58 -2.9
507,050 - ABIE40_RS21910 0.58 +1.5
507,050 - ABIE40_RS21910 0.58 +1.0
507,060 + ABIE40_RS21910 0.59 -0.4
507,060 + ABIE40_RS21910 0.59 +0.7
507,061 - ABIE40_RS21910 0.59 +0.2
507,061 - ABIE40_RS21910 0.59 +0.6
507,061 - ABIE40_RS21910 0.59 -0.8
507,267 + ABIE40_RS21910 0.77 -1.7
507,267 + ABIE40_RS21910 0.77 -1.4
507,267 + ABIE40_RS21910 0.77 +0.5
507,268 - ABIE40_RS21910 0.77 -1.6
507,268 - ABIE40_RS21910 0.77 -0.9
507,268 - ABIE40_RS21910 0.77 -1.6
507,665 - -2.6
507,689 + -0.4
507,690 - +0.8
507,690 - -1.9
507,820 + ABIE40_RS21915 0.31 -0.2
508,080 + -2.0
508,080 + -1.5
508,080 + +0.5
508,081 - -0.1
508,150 + -0.6
508,245 + +0.8
508,245 + +0.0
508,469 - ABIE40_RS21920 0.32 +1.0
508,498 + ABIE40_RS21920 0.35 -1.3
508,498 + ABIE40_RS21920 0.35 +2.1
508,498 + ABIE40_RS21920 0.35 +0.0
508,498 + ABIE40_RS21920 0.35 -1.2
508,498 + ABIE40_RS21920 0.35 +0.1
508,498 + ABIE40_RS21920 0.35 +2.7
508,498 + ABIE40_RS21920 0.35 -0.4
508,498 + ABIE40_RS21920 0.35 -0.8
508,499 - ABIE40_RS21920 0.35 -2.2
508,499 - ABIE40_RS21920 0.35 +0.1
508,499 - ABIE40_RS21920 0.35 -0.1
508,499 - ABIE40_RS21920 0.35 -0.3
508,499 - ABIE40_RS21920 0.35 -1.3
508,499 - ABIE40_RS21920 0.35 -1.8
508,499 - ABIE40_RS21920 0.35 -0.1
508,499 - ABIE40_RS21920 0.35 +1.1
508,500 + ABIE40_RS21920 0.36 -0.8
508,501 - ABIE40_RS21920 0.36 -0.4
508,516 + ABIE40_RS21920 0.37 -0.1
508,517 - ABIE40_RS21920 0.37 -0.8
508,517 - ABIE40_RS21920 0.37 +2.2
508,517 - ABIE40_RS21920 0.37 +0.2

Or see this region's nucleotide sequence