Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21115

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21105 and ABIE40_RS21110 are separated by 241 nucleotidesABIE40_RS21110 and ABIE40_RS21115 are separated by 15 nucleotidesABIE40_RS21115 and ABIE40_RS21120 are separated by 12 nucleotides ABIE40_RS21105: ABIE40_RS21105 - glutamine synthetase family protein, at 335,072 to 336,571 _RS21105 ABIE40_RS21110: ABIE40_RS21110 - helix-turn-helix domain-containing protein, at 336,813 to 337,349 _RS21110 ABIE40_RS21115: ABIE40_RS21115 - HlyD family secretion protein, at 337,365 to 338,453 _RS21115 ABIE40_RS21120: ABIE40_RS21120 - DHA2 family efflux MFS transporter permease subunit, at 338,466 to 340,043 _RS21120 Position (kb) 337 338 339Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 336.542 kb on - strandat 336.554 kb on + strandat 336.571 kb on + strandat 336.572 kb on - strandat 336.572 kb on - strandat 336.572 kb on - strandat 336.595 kb on + strandat 336.595 kb on + strandat 336.595 kb on + strandat 336.595 kb on + strandat 336.595 kb on + strandat 336.595 kb on + strandat 336.595 kb on + strandat 336.595 kb on + strandat 336.595 kb on + strandat 336.596 kb on - strandat 336.596 kb on - strandat 336.596 kb on - strandat 336.596 kb on - strandat 336.596 kb on - strandat 336.821 kb on + strandat 336.822 kb on - strandat 336.822 kb on - strandat 337.023 kb on + strand, within ABIE40_RS21110at 337.023 kb on + strand, within ABIE40_RS21110at 337.024 kb on - strand, within ABIE40_RS21110at 337.024 kb on - strand, within ABIE40_RS21110at 337.024 kb on - strand, within ABIE40_RS21110at 337.050 kb on + strand, within ABIE40_RS21110at 337.051 kb on - strand, within ABIE40_RS21110at 337.230 kb on + strand, within ABIE40_RS21110at 337.231 kb on - strand, within ABIE40_RS21110at 337.231 kb on - strand, within ABIE40_RS21110at 337.231 kb on - strand, within ABIE40_RS21110at 337.347 kb on + strandat 337.347 kb on + strandat 337.347 kb on + strandat 337.347 kb on + strandat 337.347 kb on + strandat 337.348 kb on - strandat 337.348 kb on - strandat 337.348 kb on - strandat 337.348 kb on - strandat 337.348 kb on - strandat 337.370 kb on + strandat 337.370 kb on + strandat 337.370 kb on + strandat 337.370 kb on + strandat 337.371 kb on - strandat 337.371 kb on - strandat 337.371 kb on - strandat 337.371 kb on - strandat 337.371 kb on - strandat 337.371 kb on - strandat 337.494 kb on + strand, within ABIE40_RS21115at 337.494 kb on + strand, within ABIE40_RS21115at 337.499 kb on - strand, within ABIE40_RS21115at 337.542 kb on + strand, within ABIE40_RS21115at 337.542 kb on + strand, within ABIE40_RS21115at 337.543 kb on - strand, within ABIE40_RS21115at 337.543 kb on - strand, within ABIE40_RS21115at 337.543 kb on - strand, within ABIE40_RS21115at 337.543 kb on - strand, within ABIE40_RS21115at 337.543 kb on - strand, within ABIE40_RS21115at 337.545 kb on - strand, within ABIE40_RS21115at 337.553 kb on + strand, within ABIE40_RS21115at 337.554 kb on - strand, within ABIE40_RS21115at 337.556 kb on + strand, within ABIE40_RS21115at 337.557 kb on - strand, within ABIE40_RS21115at 337.834 kb on - strand, within ABIE40_RS21115at 338.049 kb on + strand, within ABIE40_RS21115at 338.049 kb on + strand, within ABIE40_RS21115at 338.050 kb on - strand, within ABIE40_RS21115at 338.051 kb on + strand, within ABIE40_RS21115at 338.130 kb on + strand, within ABIE40_RS21115at 338.131 kb on - strand, within ABIE40_RS21115at 338.131 kb on - strand, within ABIE40_RS21115at 338.131 kb on - strand, within ABIE40_RS21115at 338.131 kb on - strand, within ABIE40_RS21115at 338.241 kb on + strand, within ABIE40_RS21115at 338.241 kb on + strand, within ABIE40_RS21115at 338.241 kb on + strand, within ABIE40_RS21115at 338.242 kb on - strand, within ABIE40_RS21115at 338.242 kb on - strand, within ABIE40_RS21115at 338.242 kb on - strand, within ABIE40_RS21115at 338.242 kb on - strand, within ABIE40_RS21115at 338.242 kb on - strand, within ABIE40_RS21115at 338.242 kb on - strand, within ABIE40_RS21115at 338.242 kb on - strand, within ABIE40_RS21115at 338.298 kb on - strand, within ABIE40_RS21115at 338.298 kb on - strand, within ABIE40_RS21115at 338.591 kb on + strandat 338.635 kb on + strand, within ABIE40_RS21120at 338.636 kb on - strand, within ABIE40_RS21120at 338.886 kb on + strand, within ABIE40_RS21120at 338.886 kb on + strand, within ABIE40_RS21120at 338.886 kb on + strand, within ABIE40_RS21120at 338.886 kb on + strand, within ABIE40_RS21120at 338.887 kb on - strand, within ABIE40_RS21120at 338.887 kb on - strand, within ABIE40_RS21120at 338.887 kb on - strand, within ABIE40_RS21120at 338.887 kb on - strand, within ABIE40_RS21120at 338.887 kb on - strand, within ABIE40_RS21120at 338.887 kb on - strand, within ABIE40_RS21120at 338.988 kb on + strand, within ABIE40_RS21120at 338.988 kb on + strand, within ABIE40_RS21120at 338.988 kb on + strand, within ABIE40_RS21120at 338.988 kb on + strand, within ABIE40_RS21120at 339.084 kb on + strand, within ABIE40_RS21120at 339.085 kb on - strand, within ABIE40_RS21120at 339.129 kb on + strand, within ABIE40_RS21120at 339.236 kb on + strand, within ABIE40_RS21120at 339.237 kb on - strand, within ABIE40_RS21120at 339.240 kb on + strand, within ABIE40_RS21120at 339.240 kb on + strand, within ABIE40_RS21120at 339.240 kb on + strand, within ABIE40_RS21120at 339.241 kb on - strand, within ABIE40_RS21120at 339.241 kb on - strand, within ABIE40_RS21120at 339.241 kb on - strand, within ABIE40_RS21120at 339.342 kb on + strand, within ABIE40_RS21120at 339.342 kb on + strand, within ABIE40_RS21120at 339.342 kb on + strand, within ABIE40_RS21120at 339.342 kb on + strand, within ABIE40_RS21120at 339.343 kb on - strand, within ABIE40_RS21120at 339.343 kb on - strand, within ABIE40_RS21120at 339.343 kb on - strand, within ABIE40_RS21120at 339.343 kb on - strand, within ABIE40_RS21120at 339.366 kb on + strand, within ABIE40_RS21120at 339.366 kb on + strand, within ABIE40_RS21120at 339.447 kb on + strand, within ABIE40_RS21120at 339.447 kb on + strand, within ABIE40_RS21120at 339.447 kb on + strand, within ABIE40_RS21120at 339.447 kb on + strand, within ABIE40_RS21120at 339.447 kb on + strand, within ABIE40_RS21120at 339.447 kb on + strand, within ABIE40_RS21120at 339.447 kb on + strand, within ABIE40_RS21120at 339.448 kb on - strand, within ABIE40_RS21120at 339.448 kb on - strand, within ABIE40_RS21120at 339.448 kb on - strand, within ABIE40_RS21120at 339.448 kb on - strand, within ABIE40_RS21120at 339.448 kb on - strand, within ABIE40_RS21120at 339.448 kb on - strand, within ABIE40_RS21120at 339.448 kb on - strand, within ABIE40_RS21120at 339.448 kb on - strand, within ABIE40_RS21120

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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336,542 - -0.2
336,554 + -0.5
336,571 + -0.2
336,572 - -3.2
336,572 - -0.8
336,572 - +0.3
336,595 + +0.6
336,595 + -1.9
336,595 + +1.3
336,595 + +1.5
336,595 + -0.4
336,595 + -1.1
336,595 + +0.2
336,595 + -1.1
336,595 + +0.5
336,596 - -1.1
336,596 - +0.5
336,596 - +0.4
336,596 - -0.0
336,596 - -0.5
336,821 + +0.4
336,822 - -1.9
336,822 - +0.3
337,023 + ABIE40_RS21110 0.39 -1.3
337,023 + ABIE40_RS21110 0.39 -1.5
337,024 - ABIE40_RS21110 0.39 +0.5
337,024 - ABIE40_RS21110 0.39 -1.8
337,024 - ABIE40_RS21110 0.39 +0.2
337,050 + ABIE40_RS21110 0.44 -2.2
337,051 - ABIE40_RS21110 0.44 -0.2
337,230 + ABIE40_RS21110 0.78 +0.8
337,231 - ABIE40_RS21110 0.78 -0.8
337,231 - ABIE40_RS21110 0.78 +1.2
337,231 - ABIE40_RS21110 0.78 +0.2
337,347 + +0.1
337,347 + -0.3
337,347 + +0.4
337,347 + -1.5
337,347 + -0.4
337,348 - -1.1
337,348 - -0.7
337,348 - +1.0
337,348 - +0.1
337,348 - -0.2
337,370 + +0.1
337,370 + +1.5
337,370 + -0.2
337,370 + -0.9
337,371 - +0.9
337,371 - -1.4
337,371 - +1.5
337,371 - -0.8
337,371 - +0.9
337,371 - +0.4
337,494 + ABIE40_RS21115 0.12 +0.2
337,494 + ABIE40_RS21115 0.12 -1.1
337,499 - ABIE40_RS21115 0.12 -2.5
337,542 + ABIE40_RS21115 0.16 +0.6
337,542 + ABIE40_RS21115 0.16 +0.0
337,543 - ABIE40_RS21115 0.16 -0.6
337,543 - ABIE40_RS21115 0.16 +0.2
337,543 - ABIE40_RS21115 0.16 +0.2
337,543 - ABIE40_RS21115 0.16 -1.9
337,543 - ABIE40_RS21115 0.16 -0.3
337,545 - ABIE40_RS21115 0.17 -0.1
337,553 + ABIE40_RS21115 0.17 +1.0
337,554 - ABIE40_RS21115 0.17 +0.9
337,556 + ABIE40_RS21115 0.18 -1.1
337,557 - ABIE40_RS21115 0.18 +0.9
337,834 - ABIE40_RS21115 0.43 -0.3
338,049 + ABIE40_RS21115 0.63 +1.7
338,049 + ABIE40_RS21115 0.63 +0.3
338,050 - ABIE40_RS21115 0.63 -0.8
338,051 + ABIE40_RS21115 0.63 +0.1
338,130 + ABIE40_RS21115 0.70 -0.0
338,131 - ABIE40_RS21115 0.70 -0.5
338,131 - ABIE40_RS21115 0.70 -0.1
338,131 - ABIE40_RS21115 0.70 -0.4
338,131 - ABIE40_RS21115 0.70 +0.2
338,241 + ABIE40_RS21115 0.80 +0.8
338,241 + ABIE40_RS21115 0.80 +0.7
338,241 + ABIE40_RS21115 0.80 -0.1
338,242 - ABIE40_RS21115 0.81 +0.4
338,242 - ABIE40_RS21115 0.81 +0.0
338,242 - ABIE40_RS21115 0.81 -0.8
338,242 - ABIE40_RS21115 0.81 +0.2
338,242 - ABIE40_RS21115 0.81 +3.5
338,242 - ABIE40_RS21115 0.81 -0.6
338,242 - ABIE40_RS21115 0.81 +0.8
338,298 - ABIE40_RS21115 0.86 -0.5
338,298 - ABIE40_RS21115 0.86 -0.8
338,591 + -0.2
338,635 + ABIE40_RS21120 0.11 +0.3
338,636 - ABIE40_RS21120 0.11 +0.0
338,886 + ABIE40_RS21120 0.27 -0.1
338,886 + ABIE40_RS21120 0.27 -0.6
338,886 + ABIE40_RS21120 0.27 -0.2
338,886 + ABIE40_RS21120 0.27 -0.7
338,887 - ABIE40_RS21120 0.27 -0.1
338,887 - ABIE40_RS21120 0.27 -1.0
338,887 - ABIE40_RS21120 0.27 +0.5
338,887 - ABIE40_RS21120 0.27 +0.4
338,887 - ABIE40_RS21120 0.27 +0.0
338,887 - ABIE40_RS21120 0.27 +0.4
338,988 + ABIE40_RS21120 0.33 +0.3
338,988 + ABIE40_RS21120 0.33 +0.7
338,988 + ABIE40_RS21120 0.33 +0.6
338,988 + ABIE40_RS21120 0.33 +0.2
339,084 + ABIE40_RS21120 0.39 +0.8
339,085 - ABIE40_RS21120 0.39 +1.1
339,129 + ABIE40_RS21120 0.42 +0.3
339,236 + ABIE40_RS21120 0.49 +0.5
339,237 - ABIE40_RS21120 0.49 +0.6
339,240 + ABIE40_RS21120 0.49 +0.5
339,240 + ABIE40_RS21120 0.49 +0.2
339,240 + ABIE40_RS21120 0.49 +1.3
339,241 - ABIE40_RS21120 0.49 -1.7
339,241 - ABIE40_RS21120 0.49 +0.4
339,241 - ABIE40_RS21120 0.49 +0.4
339,342 + ABIE40_RS21120 0.56 -0.2
339,342 + ABIE40_RS21120 0.56 +0.3
339,342 + ABIE40_RS21120 0.56 +0.2
339,342 + ABIE40_RS21120 0.56 -1.0
339,343 - ABIE40_RS21120 0.56 +0.7
339,343 - ABIE40_RS21120 0.56 +0.5
339,343 - ABIE40_RS21120 0.56 -0.4
339,343 - ABIE40_RS21120 0.56 -0.5
339,366 + ABIE40_RS21120 0.57 +0.1
339,366 + ABIE40_RS21120 0.57 -1.0
339,447 + ABIE40_RS21120 0.62 -0.0
339,447 + ABIE40_RS21120 0.62 +1.0
339,447 + ABIE40_RS21120 0.62 -0.3
339,447 + ABIE40_RS21120 0.62 -0.2
339,447 + ABIE40_RS21120 0.62 +0.5
339,447 + ABIE40_RS21120 0.62 -0.4
339,447 + ABIE40_RS21120 0.62 +0.2
339,448 - ABIE40_RS21120 0.62 +0.5
339,448 - ABIE40_RS21120 0.62 +1.0
339,448 - ABIE40_RS21120 0.62 -1.5
339,448 - ABIE40_RS21120 0.62 +0.8
339,448 - ABIE40_RS21120 0.62 +2.3
339,448 - ABIE40_RS21120 0.62 -2.2
339,448 - ABIE40_RS21120 0.62 +1.3
339,448 - ABIE40_RS21120 0.62 -0.1

Or see this region's nucleotide sequence